cluster # 349

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Schistosoma mansoni
cluster # 349 cluster # 349 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_349#0 length = 245 sequences # 1

consensus_349#1 length = 227 sequences # 1

consensusID : consensus_349#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 245
fasta sequence

                              [CTTATCAGTCACGTTCACAAACTCCTCTTCTCCAGGTGTCGTCGATTCGCCCAGTGGTCCGAGAGTGGTTCGTCTTCTCCTCCTTCGTTTCTCCTGACCAACAACTACACCCTGTTTGTCCGTCACGTTCACCAACTCCTCTTCTCCAGGTGTCGTCGACTCGCCCAGTGGTCCGTGAGTGGTTTTTTGAATCCTTGGTCTTGATTGATTTCCCACAACTCTTCCTTGCTGGGCAGAATTGCTGT]

[+] EMBL CD144162             [CTTATCAGTCACGTTCACAAACTCCTCTTCTCCAGGTGTCGTCGATTCGCCCAGTGGTCCGAGAGTGGTTCGTCTTCTCCTCCTTCGTTTCTCCTGACCAACAACTACACCCTGTTTGTCCGTCACGTTCACCAACTCCTCTTCTCCAGGTGTCGTCGACTCGCCCAGTGGTCCGTGAGTGGTTTTTTGAATCCTTGGTCTTGATTGATTTCCCACAACTCTTCCTTGCTGGGCAGAATTGCTGT]




>consensus_349#0
CTTATCAGTCACGTTCACAAACTCCTCTTCTCCAGGTGTCGTCGATTCGCCCAGTGGTCC
GAGAGTGGTTCGTCTTCTCCTCCTTCGTTTCTCCTGACCAACAACTACACCCTGTTTGTC
CGTCACGTTCACCAACTCCTCTTCTCCAGGTGTCGTCGACTCGCCCAGTGGTCCGTGAGT
GGTTTTTTGAATCCTTGGTCTTGATTGATTTCCCACAACTCTTCCTTGCTGGGCAGAATT
GCTGT

consensusID : consensus_349#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 227
fasta sequence

                              [CCANNNAGNTNNACNACNACCCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCCTTCGTTTCTCCTGACCAACAACTACACCCTGTTTGTCCGTCACGTTCACCAACTCCTCTTCTCCAGGTGTCGTCGATTCGCCCAGTGGTCCGAGTGTGGTTTGTGAATTGACGAGGC]

[-] EMBL CD144236             [CCANNNAGNTNNACNACNACCCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCCTTCGTTTCTCCTGACCAACAACTACACCCTGTTTGTCCGTCACGTTCACCAACTCCTCTTCTCCAGGTGTCGTCGATTCGCCCAGTGGTCCGAGTGTGGTTTGTGAATTGACGAGGC]




>consensus_349#1
CCANNNAGNTNNACNACNACCCAACACCAACACCAACACCAACACCAACCAACCTATAAC
TCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCCTTCGTTTCTC
CTGACCAACAACTACACCCTGTTTGTCCGTCACGTTCACCAACTCCTCTTCTCCAGGTGT
CGTCGATTCGCCCAGTGGTCCGAGTGTGGTTTGTGAATTGACGAGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_349#0      --------CTTATCAGTCACGTT-CACAAACTCC----TCTTCTCCAGGTGTCGT-CGAT 46
consensus_349#1      CCANNNAGNTNNACNACNACCCAACACCAACACCAACACCAACACCAACCAACCTATAAC 60
                              *   *    **    *** *** **     *  * ***     * *   * 

consensus_349#0      TCGCC--CAGTGGTCCG-AGAGTGGT-TCGTCT---------TCTCCTCCTTCGTTTCTC 93
consensus_349#1      TCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCCTTCGTTTCTC 120
                     ** *   ** **   *  * *** *  *****           *** *************

consensus_349#0      CTGACCAACAACTACACCCTGTTTGTCCGTCACGTTCACCAACTCCTCTTCTCCAGGTGT 153
consensus_349#1      CTGACCAACAACTACACCCTGTTTGTCCGTCACGTTCACCAACTCCTCTTCTCCAGGTGT 180
                     ************************************************************

consensus_349#0      CGTCGACTCGCCCAGTGGTCCGTGAGTGGTTTTTTGAATCCTTGGTCTTGATTGATTTCC 213
consensus_349#1      CGTCGATTCGCCCAGTGGTCCGAGTGTGGTTTGTGAATTGACGAGGC------------- 227
                     ****** *************** * ******* *  * *     * *             

consensus_349#0      CACAACTCTTCCTTGCTGGGCAGAATTGCTGT 245
consensus_349#1      --------------------------------