These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_349#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 245 fasta sequence [CTTATCAGTCACGTTCACAAACTCCTCTTCTCCAGGTGTCGTCGATTCGCCCAGTGGTCCGAGAGTGGTTCGTCTTCTCCTCCTTCGTTTCTCCTGACCAACAACTACACCCTGTTTGTCCGTCACGTTCACCAACTCCTCTTCTCCAGGTGTCGTCGACTCGCCCAGTGGTCCGTGAGTGGTTTTTTGAATCCTTGGTCTTGATTGATTTCCCACAACTCTTCCTTGCTGGGCAGAATTGCTGT] [+] EMBL CD144162 [CTTATCAGTCACGTTCACAAACTCCTCTTCTCCAGGTGTCGTCGATTCGCCCAGTGGTCCGAGAGTGGTTCGTCTTCTCCTCCTTCGTTTCTCCTGACCAACAACTACACCCTGTTTGTCCGTCACGTTCACCAACTCCTCTTCTCCAGGTGTCGTCGACTCGCCCAGTGGTCCGTGAGTGGTTTTTTGAATCCTTGGTCTTGATTGATTTCCCACAACTCTTCCTTGCTGGGCAGAATTGCTGT] consensusID : consensus_349#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 227 fasta sequence [CCANNNAGNTNNACNACNACCCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCCTTCGTTTCTCCTGACCAACAACTACACCCTGTTTGTCCGTCACGTTCACCAACTCCTCTTCTCCAGGTGTCGTCGATTCGCCCAGTGGTCCGAGTGTGGTTTGTGAATTGACGAGGC] [-] EMBL CD144236 [CCANNNAGNTNNACNACNACCCAACACCAACACCAACACCAACACCAACCAACCTATAACTCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCCTTCGTTTCTCCTGACCAACAACTACACCCTGTTTGTCCGTCACGTTCACCAACTCCTCTTCTCCAGGTGTCGTCGATTCGCCCAGTGGTCCGAGTGTGGTTTGTGAATTGACGAGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_349#0 --------CTTATCAGTCACGTT-CACAAACTCC----TCTTCTCCAGGTGTCGT-CGAT 46 consensus_349#1 CCANNNAGNTNNACNACNACCCAACACCAACACCAACACCAACACCAACCAACCTATAAC 60 * * ** *** *** ** * * *** * * * consensus_349#0 TCGCC--CAGTGGTCCG-AGAGTGGT-TCGTCT---------TCTCCTCCTTCGTTTCTC 93 consensus_349#1 TCACTAACACTGTCTCATACAGTTGCCTCGTCAATTCACAAACCTCTTCCTTCGTTTCTC 120 ** * ** ** * * *** * ***** *** ************* consensus_349#0 CTGACCAACAACTACACCCTGTTTGTCCGTCACGTTCACCAACTCCTCTTCTCCAGGTGT 153 consensus_349#1 CTGACCAACAACTACACCCTGTTTGTCCGTCACGTTCACCAACTCCTCTTCTCCAGGTGT 180 ************************************************************ consensus_349#0 CGTCGACTCGCCCAGTGGTCCGTGAGTGGTTTTTTGAATCCTTGGTCTTGATTGATTTCC 213 consensus_349#1 CGTCGATTCGCCCAGTGGTCCGAGTGTGGTTTGTGAATTGACGAGGC------------- 227 ****** *************** * ******* * * * * * consensus_349#0 CACAACTCTTCCTTGCTGGGCAGAATTGCTGT 245 consensus_349#1 -------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||