cluster # 3498

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 3498 cluster # 3498 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3498#0 length = 388 sequences # 1

consensus_3498#1 length = 256 sequences # 1

consensusID : consensus_3498#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 388
fasta sequence

                              [AAAGAATCTTATAACAAACCTTATTTGAGTAGTAAACACGAATTGTTTTTAAAAAAAGCAAACAGGAATATAAAAATTAACACTTGAGATGTTATAAAATTTATATCTGGAATATCAAACAAAATCATGATGGAAATTAATACACGATGGGGATTATAGAAAAAAATCAGACACCCCCTTCTTCACATTGGGTGACTAAGTAACCCCACCAGTTCTTGAATACGAAAAGGAGTAGCTCAAAATCAAAAAAACACAAATCTTTACTAAATGATTAAATATTTTCTATCAAATATAGAACATTTGAACAAGGAATCTAATAAGAAACAAGAAAAATTTCAATAAAAATATATTTTACACAAATTGATTAAAATTAATTATCGATTTCTAA]

[+] EMBL CD134032             [AAAGAATCTTATAACAAACCTTATTTGAGTAGTAAACACGAATTGTTTTTAAAAAAAGCAAACAGGAATATAAAAATTAACACTTGAGATGTTATAAAATTTATATCTGGAATATCAAACAAAATCATGATGGAAATTAATACACGATGGGGATTATAGAAAAAAATCAGACACCCCCTTCTTCACATTGGGTGACTAAGTAACCCCACCAGTTCTTGAATACGAAAAGGAGTAGCTCAAAATCAAAAAAACACAAATCTTTACTAAATGATTAAATATTTTCTATCAAATATAGAACATTTGAACAAGGAATCTAATAAGAAACAAGAAAAATTTCAATAAAAATATATTTTACACAAATTGATTAAAATTAATTATCGATTTCTAA]




>consensus_3498#0
AAAGAATCTTATAACAAACCTTATTTGAGTAGTAAACACGAATTGTTTTTAAAAAAAGCA
AACAGGAATATAAAAATTAACACTTGAGATGTTATAAAATTTATATCTGGAATATCAAAC
AAAATCATGATGGAAATTAATACACGATGGGGATTATAGAAAAAAATCAGACACCCCCTT
CTTCACATTGGGTGACTAAGTAACCCCACCAGTTCTTGAATACGAAAAGGAGTAGCTCAA
AATCAAAAAAACACAAATCTTTACTAAATGATTAAATATTTTCTATCAAATATAGAACAT
TTGAACAAGGAATCTAATAAGAAACAAGAAAAATTTCAATAAAAATATATTTTACACAAA
TTGATTAAAATTAATTATCGATTTCTAA

consensusID : consensus_3498#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 256
fasta sequence

                              [TCAGACACCCCCTTCTTCACTATGGGTGACTAAGTAACCCCACCAGTTCTTGAATACGAAAAGGAGTAGCTCAAAATCAAAAAAACACAAATCTTTACTAAATGATTAGAAGTGTATGGCCATTAACTGATTAACACATTGATGTATACTTGGAAATTTTGATCGTAGAAGATCTCCTTTATCATTGTGAAATACATGTTGGTGCAGACAGATGAACAAGTAAACCACCTTTGATTTGAGTGTCATATTTTCTTTA]

[+] EMBL CD197521             [TCAGACACCCCCTTCTTCACTATGGGTGACTAAGTAACCCCACCAGTTCTTGAATACGAAAAGGAGTAGCTCAAAATCAAAAAAACACAAATCTTTACTAAATGATTAGAAGTGTATGGCCATTAACTGATTAACACATTGATGTATACTTGGAAATTTTGATCGTAGAAGATCTCCTTTATCATTGTGAAATACATGTTGGTGCAGACAGATGAACAAGTAAACCACCTTTGATTTGAGTGTCATATTTTCTTTA]




>consensus_3498#1
TCAGACACCCCCTTCTTCACTATGGGTGACTAAGTAACCCCACCAGTTCTTGAATACGAA
AAGGAGTAGCTCAAAATCAAAAAAACACAAATCTTTACTAAATGATTAGAAGTGTATGGC
CATTAACTGATTAACACATTGATGTATACTTGGAAATTTTGATCGTAGAAGATCTCCTTT
ATCATTGTGAAATACATGTTGGTGCAGACAGATGAACAAGTAAACCACCTTTGATTTGAG
TGTCATATTTTCTTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3498#0      AAAGAATCTTATAACAAACCTTATTTGAGTAGTAAACACGAATTGTTTTTAAAAAAAGCA 60
consensus_3498#1      ------------------------------------------------------------
                                                                                  

consensus_3498#0      AACAGGAATATAAAAATTAACACTTGAGATGTTATAAAATTTATATCTGGAATATCAAAC 120
consensus_3498#1      ------------------------------------------------------------
                                                                                  

consensus_3498#0      AAAATCATGATGGAAATTAATACACGATGGGGATTATAGAAAAAAATCAGACACCCCCTT 180
consensus_3498#1      ----------------------------------------------TCAGACACCCCCTT 14
                                                                    **************

consensus_3498#0      CTTCACATTGGGTGACTAAGTAACCCCACCAGTTCTTGAATACGAAAAGGAGTAGCTCAA 240
consensus_3498#1      CTTCACTATGGGTGACTAAGTAACCCCACCAGTTCTTGAATACGAAAAGGAGTAGCTCAA 74
                      ******  ****************************************************

consensus_3498#0      AATCAAAAAAACACAAATCTTTACTAAATGATTAAATATTTT---CTATCAAATA--TAG 295
consensus_3498#1      AATCAAAAAAACACAAATCTTTACTAAATGATTAGAAGTGTATGGCCATTAACTGATTAA 134
                      ********************************** *  * *    * ** ** *   ** 

consensus_3498#0      AACATT----TGAACAAGGAATCTAATAAGAAACAAGAAAAATTTCAATA----AAAATA 347
consensus_3498#1      CACATTGATGTATACTTGGAAATTTTGATCGTAGAAGATCTCCTTTATCATTGTGAAATA 194
                       *****    *  **  ****  *   *    * ****     ** *  *     *****

consensus_3498#0      TATTTTA-CACAAATTGATTAAAATTAATTATCGATTTCTAA------------------ 388
consensus_3498#1      CATGTTGGTGCAGACAGAT--GAACAAGTAAACCACCTTTGATTTGAGTGTCATATTTTC 252
                       ** **    ** *  ***   **  * * * * *  * * *                  

consensus_3498#0      ----
consensus_3498#1      TTTA 256