cluster # 3510

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Schistosoma mansoni
cluster # 3510 cluster # 3510 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3510#0 length = 634 sequences # 1

consensus_3510#1 length = 331 sequences # 1

consensusID : consensus_3510#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence

                              [TATAGCACTAGTTTCAAACTGTCTCCATGGGACTGAAAAAGAAATATACTTCTCCCTAGTCAAGAAATGTCTACAGCTCAAATACAGATCCCGGCAATCTGACAGTTCACCAGTTCCGTCTAACAAACAGTATGCTCAATCAAAGACGGAAAACATAAGAATATCTTGAATCTGAACATCAATATTTTCGTTATTACGCTCATCATCACAAGCTGAAAAAACTTCTGTTTCCAACAGAGTTTCAAAAGTCGATTTTGTGGGATCCGATGTTGAATACGAGTTATCCTAACAACATAAGTGATTCCTGTTCAATTTCCGTAGAAGATACTAAACTTCTATTGATTTCCAGCATACCTAAGTTTTACCATGCTTCTAATTTAAGGAATTTTTTCTCACAATTCGTTGAGGCATCTAAATTTTCATGTTTTCACTACCGTCATAGACCAGATATCGTGGGTGTAGAATCAACTACCGAAATAGATGGAACCCAGTTCCTTAAGTCCATCAAACTAGTTACCAAAAACAAAGCAACGTGCTGTGCTATTTTGTCTATCTACGCGAAATATATCGAAGAGTTTTTTCGTACATATAGTGGTCTTAATTGGCCTAATGAGAATGATGATGTGCCTTTGGA]

[+] EMBL CD178420             [TATAGCACTAGTTTCAAACTGTCTCCATGGGACTGAAAAAGAAATATACTTCTCCCTAGTCAAGAAATGTCTACAGCTCAAATACAGATCCCGGCAATCTGACAGTTCACCAGTTCCGTCTAACAAACAGTATGCTCAATCAAAGACGGAAAACATAAGAATATCTTGAATCTGAACATCAATATTTTCGTTATTACGCTCATCATCACAAGCTGAAAAAACTTCTGTTTCCAACAGAGTTTCAAAAGTCGATTTTGTGGGATCCGATGTTGAATACGAGTTATCCTAACAACATAAGTGATTCCTGTTCAATTTCCGTAGAAGATACTAAACTTCTATTGATTTCCAGCATACCTAAGTTTTACCATGCTTCTAATTTAAGGAATTTTTTCTCACAATTCGTTGAGGCATCTAAATTTTCATGTTTTCACTACCGTCATAGACCAGATATCGTGGGTGTAGAATCAACTACCGAAATAGATGGAACCCAGTTCCTTAAGTCCATCAAACTAGTTACCAAAAACAAAGCAACGTGCTGTGCTATTTTGTCTATCTACGCGAAATATATCGAAGAGTTTTTTCGTACATATAGTGGTCTTAATTGGCCTAATGAGAATGATGATGTGCCTTTGGA]




>consensus_3510#0
TATAGCACTAGTTTCAAACTGTCTCCATGGGACTGAAAAAGAAATATACTTCTCCCTAGT
CAAGAAATGTCTACAGCTCAAATACAGATCCCGGCAATCTGACAGTTCACCAGTTCCGTC
TAACAAACAGTATGCTCAATCAAAGACGGAAAACATAAGAATATCTTGAATCTGAACATC
AATATTTTCGTTATTACGCTCATCATCACAAGCTGAAAAAACTTCTGTTTCCAACAGAGT
TTCAAAAGTCGATTTTGTGGGATCCGATGTTGAATACGAGTTATCCTAACAACATAAGTG
ATTCCTGTTCAATTTCCGTAGAAGATACTAAACTTCTATTGATTTCCAGCATACCTAAGT
TTTACCATGCTTCTAATTTAAGGAATTTTTTCTCACAATTCGTTGAGGCATCTAAATTTT
CATGTTTTCACTACCGTCATAGACCAGATATCGTGGGTGTAGAATCAACTACCGAAATAG
ATGGAACCCAGTTCCTTAAGTCCATCAAACTAGTTACCAAAAACAAAGCAACGTGCTGTG
CTATTTTGTCTATCTACGCGAAATATATCGAAGAGTTTTTTCGTACATATAGTGGTCTTA
ATTGGCCTAATGAGAATGATGATGTGCCTTTGGA

consensusID : consensus_3510#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 331
fasta sequence

                              [CCGTCTAACAAACAGTATGCTCAATCAAAGACGGAAAACTAAATATTNTNNGGATTTCAACANNCAATTTTTCGTTTTCCCCCCTAACACANAAATTCATTTTTTTTTGAAAAAAAANNNNNNNGNNNNNNGTGGGTGGGGGCCGTTNNNNATATATATAATTTTTACAAACAATAATGTCTGGTNNNTGTTATCTTTCCGGAGAAGATACTAAACTTCTATTGATTTCCAGCATACCTTAGTTTTACCATGCTTCTAATTTAAGGAATTTTTTCTCACAATTCGTTGAGGCATCTAAATTTTCATGTTTTCACTACCGTCATAGACCANA]

[+] EMBL CD119790             [CCGTCTAACAAACAGTATGCTCAATCAAAGACGGAAAACTAAATATTNTNNGGATTTCAACANNCAATTTTTCGTTTTCCCCCCTAACACANAAATTCATTTTTTTTTGAAAAAAAANNNNNNNGNNNNNNGTGGGTGGGGGCCGTTNNNNATATATATAATTTTTACAAACAATAATGTCTGGTNNNTGTTATCTTTCCGGAGAAGATACTAAACTTCTATTGATTTCCAGCATACCTTAGTTTTACCATGCTTCTAATTTAAGGAATTTTTTCTCACAATTCGTTGAGGCATCTAAATTTTCATGTTTTCACTACCGTCATAGACCANA]




>consensus_3510#1
CCGTCTAACAAACAGTATGCTCAATCAAAGACGGAAAACTAAATATTNTNNGGATTTCAA
CANNCAATTTTTCGTTTTCCCCCCTAACACANAAATTCATTTTTTTTTGAAAAAAAANNN
NNNNGNNNNNNGTGGGTGGGGGCCGTTNNNNATATATATAATTTTTACAAACAATAATGT
CTGGTNNNTGTTATCTTTCCGGAGAAGATACTAAACTTCTATTGATTTCCAGCATACCTT
AGTTTTACCATGCTTCTAATTTAAGGAATTTTTTCTCACAATTCGTTGAGGCATCTAAAT
TTTCATGTTTTCACTACCGTCATAGACCANA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3510#0      TATAGCACTAGTTTCAAACTGTCTCCATGGGACTGAAAAAGAAATATACTTCTCCCTAGT 60
consensus_3510#1      ------------------------------------------------------------
                                                                                  

consensus_3510#0      CAAGAAATGTCTACAGCTCAAATACAGATCCCGGCAATCTGACAGTTCACCAGTTCCGTC 120
consensus_3510#1      -------------------------------------------------------CCGTC 5
                                                                             *****

consensus_3510#0      TAACAAACAGTATGCTCAATCAAAGACGGAAAACATAAGAATATCTTGAATCTGAACATC 180
consensus_3510#1      TAACAAACAGTATGCTCAATCAAAGACGGAAAAC-TAAATATTNTNNGGATTTCAACANN 64
                      ********************************** ***  **     * ** * ****  

consensus_3510#0      AATATTTTCGTTATTACGCTCATCATCACAAGCTGAAAAAACTTCTGTTTCCAACAGAGT 240
consensus_3510#1      CAATTTTTCGTTTTCCCCCCTAACA-CANAAATTCAT----TTTTTTTTGAAAAAAAANN 119
                       *  ******** *  * *  * ** ** **  * *      ** * **   ** * *  

consensus_3510#0      TTCAAAAGTCGATTTTGTGGGATCCGATGTTGA---ATACGAGTTATCCTAACAACA-TA 296
consensus_3510#1      NNNNNGNNNNNNGTGGGTGGGGGCCGTTNNNNATATATATAATTTTTACAAACAATAATG 179
                                   *  *****  *** *    *   ***  * ** * * ***** * * 

consensus_3510#0      AGTGATTCCTGTTCAATTTCCGTAGAAGATACTAAACTTCTATTGATTTCCAGCATACCT 356
consensus_3510#1      TCTGGTNNNTGTTATCTTTCCGGAGAAGATACTAAACTTCTATTGATTTCCAGCATACCT 239
                        ** *   ****   ****** *************************************

consensus_3510#0      AAGTTTTACCATGCTTCTAATTTAAGGAATTTTTTCTCACAATTCGTTGAGGCATCTAAA 416
consensus_3510#1      TAGTTTTACCATGCTTCTAATTTAAGGAATTTTTTCTCACAATTCGTTGAGGCATCTAAA 299
                       ***********************************************************

consensus_3510#0      TTTTCATGTTTTCACTACCGTCATAGACCAGATATCGTGGGTGTAGAATCAACTACCGAA 476
consensus_3510#1      TTTTCATGTTTTCACTACCGTCATAGACCANA---------------------------- 331
                      ****************************** *                            

consensus_3510#0      ATAGATGGAACCCAGTTCCTTAAGTCCATCAAACTAGTTACCAAAAACAAAGCAACGTGC 536
consensus_3510#1      ------------------------------------------------------------
                                                                                  

consensus_3510#0      TGTGCTATTTTGTCTATCTACGCGAAATATATCGAAGAGTTTTTTCGTACATATAGTGGT 596
consensus_3510#1      ------------------------------------------------------------
                                                                                  

consensus_3510#0      CTTAATTGGCCTAATGAGAATGATGATGTGCCTTTGGA 634
consensus_3510#1      --------------------------------------