These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_358#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence [GGCCGCGGCGGCCGTGACGGTGGTCGCGGTGGCCAGCAGGAGAAGAGCCAGTACATCGAGCGCGTCGTGGCCATCAACCGCGTCGCCAAGGTCGTCAAGGGTGGTCGTCGCTTCAGCTTCACCGCCCTGGTGATCGTCGGTGACGGCGACGGCCTGGTCGGCGTCGGCTACGGCAAGGCGAAGGAGGTGCCGGCCGCCATCCAGAAGGGCGTGGAGGAGGCCAAGAAGCACTTCTTCCGCGTGCCCCGCATCCAGGGCACCATCCCGCACCCCGTCCAGGGCGAGAAGGCCGCAGGCGTCGTCCTGCTGCGTCCCGCGTCGCCCGGTACCGGTGTCATCGCCGGTGGTCCGGTGCGTGCGGTGCTCGAGTGCGCCGGCATCCACGACGTGCTGAGCAAGTCGCTCGGCTCGTCCAACCAGATCAACATCGTCCACGCCACGGTCGAGGCGCTGCGCTCCCTCGAGGAGCCGGAGGCCGTCGCGGCCCGTCGCGGCCTGCCNCGTGGAGGACGTCGCCCCGGCGGCGCTGCTCAAGGCCCGGGCCGAGGTGCCCGACGGCGTGAGNCGGGGAGGTGGCTTCCTGATGGCGCACCTCAAGGTCGAGCAGAAGAAGTCCGGCATCGGCTGCAAGCAGAACCAGCGCGACACCCTGCGCTCGCTGGGTCT] [+] EMBL CD074723 [GGCCGCGGCGGCCGTGACGGTGGTCGCGGTGGCCAGCAGGAGAAGAGCCAGTACATCGAGCGCGTCGTGGCCATCAACCGCGTCGCCAAGGTCGTCAAGGGTGGTCGTCGCTTCAGCTTCACCGCCCTGGTGATCGTCGGTGACGGCGACGGCCTGGTCGGCGTCGGCTACGGCAAGGCGAAGGAGGTGCCGGCCGCCATCCAGAAGGGCGTGGAGGAGGCCAAGAAGCACTTCTTCCGCGTGCCCCGCATCCAGGGCACCATCCCGCACCCCGTCCAGGGCGAGAAGGCCGCAGGCGTCGTCCTGCTGCGTCCCGCGTCGCCCGGTACCGGTGTCATCGCCGGTGGTCCGGTGCGTGCGGTGCTCGAGTGCGCCGGCATCCACGACGTGCTGAGCAAGTCGCTCGGCTCGTCCAACCAGATCAACATCGTCCACGCCACGGTCGAGGCGCTGCGCTCCCTCGAGGAGCCGGAGGCCGTCGCGGCCCGTCGCGGCCTGCCNCGTGGAGGACGTCGCCCCGGCGGCGCTGCTCAAGGCCCGGGCCGAGGTGCCCGACGGCGTGAGNCGGGGAGGTGGCTTCCTGATGGCGCACCTCAAGGTCGAGCAGAAGAAGTCCGGCATCGGCTGCAAGCAGAACCAGCGCGACACCCTGCGCTCGCTGGGTCT] consensusID : consensus_358#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence [AGGGTGGTCGTCGCTTCAGCTTCACCGCCNTGGTGATCGTCGGTGACGGCGACGGCCTGGTCGGCGTCGGCATCCAGAAGGGCGTGGAGGAGGCCAAGAAGCACTTCTTCCGCGTGCCCCGCATCCAGGGCACCATCCCGCACCCCGTCCAGGGCGAGAAGGCCGCAGGCGTCGTCCTGCTGCGTCCCGCGTCGCCCGGTACCGGTGTCNNNNNNNNTGGTCCGGTGCGTGCGGTGCTCGAGTGCGCCGGCATCCACGACGTGCTGAGCAAGTCGCTCGGCTCGTCCAACCAGATCAACATCGTCCACGCCACGGTCGAGGCGCTGCGCTCCCTCGAGGAGCCGGAGGCCGTCGCGGCCCGTCGNNNNNNNNNNNTGGAGGACGTCGCCCCGGCGGCGCTGCTCAAGGCCCGGGCCGAGGTGCCCGACGGCGTGAGCCGGGAGGTGGCTTCCTGATGGCGCACCTCAAGGTCGAGCAGAAGAAGTCCGGCATCGGCTGCAAGCAGAACCAGCGCGAGGATCGGTGACGTGGTCGTCAAGGAGGACCGGCCCGAGTTCCGGTCCTCGTGCCGAGTTNT] [-] EMBL CD080891 [AGGGTGGTCGTCGCTTCAGCTTCACCGCCNTGGTGATCGTCGGTGACGGCGACGGCCTGGTCGGCGTCGGCATCCAGAAGGGCGTGGAGGAGGCCAAGAAGCACTTCTTCCGCGTGCCCCGCATCCAGGGCACCATCCCGCACCCCGTCCAGGGCGAGAAGGCCGCAGGCGTCGTCCTGCTGCGTCCCGCGTCGCCCGGTACCGGTGTCNNNNNNNNTGGTCCGGTGCGTGCGGTGCTCGAGTGCGCCGGCATCCACGACGTGCTGAGCAAGTCGCTCGGCTCGTCCAACCAGATCAACATCGTCCACGCCACGGTCGAGGCGCTGCGCTCCCTCGAGGAGCCGGAGGCCGTCGCGGCCCGTCGNNNNNNNNNNNTGGAGGACGTCGCCCCGGCGGCGCTGCTCAAGGCCCGGGCCGAGGTGCCCGACGGCGTGAGCCGGGAGGTGGCTTCCTGATGGCGCACCTCAAGGTCGAGCAGAAGAAGTCCGGCATCGGCTGCAAGCAGAACCAGCGCGAGGATCGGTGACGTGGTCGTCAAGGAGGACCGGCCCGAGTTCCGGTCCTCGTGCCGAGTTNT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_358#0 GGCCGCGGCGGCCGTGACGGTGGTCGCGGTGGCCAGCAGGAGAAGAGCCAGTACATCGAG 60 consensus_358#1 ------------------------------------------------------------ consensus_358#0 CGCGTCGTGGCCATCAACCGCGTCGCCAAGGTCGTCAAGGGTGGTCGTCGCTTCAGCTTC 120 consensus_358#1 -------------------------------------AGGGTGGTCGTCGCTTCAGCTTC 23 *********************** consensus_358#0 ACCGCCCTGGTGATCGTCGGTGACGGCGACGGCCTGGTCGGCGTCGGCTACGGCAAGGCG 180 consensus_358#1 ACCGCCNTGGTGATCGTCGGTGACGGCGACGGCCTGGTCGGCGTCGGC------------ 71 ****** ***************************************** consensus_358#0 AAGGAGGTGCCGGCCGCCATCCAGAAGGGCGTGGAGGAGGCCAAGAAGCACTTCTTCCGC 240 consensus_358#1 ------------------ATCCAGAAGGGCGTGGAGGAGGCCAAGAAGCACTTCTTCCGC 113 ****************************************** consensus_358#0 GTGCCCCGCATCCAGGGCACCATCCCGCACCCCGTCCAGGGCGAGAAGGCCGCAGGCGTC 300 consensus_358#1 GTGCCCCGCATCCAGGGCACCATCCCGCACCCCGTCCAGGGCGAGAAGGCCGCAGGCGTC 173 ************************************************************ consensus_358#0 GTCCTGCTGCGTCCCGCGTCGCCCGGTACCGGTGTCATCGCCGGTGGTCCGGTGCGTGCG 360 consensus_358#1 GTCCTGCTGCGTCCCGCGTCGCCCGGTACCGGTGTCNNNNNNNNTGGTCCGGTGCGTGCG 233 ************************************ **************** consensus_358#0 GTGCTCGAGTGCGCCGGCATCCACGACGTGCTGAGCAAGTCGCTCGGCTCGTCCAACCAG 420 consensus_358#1 GTGCTCGAGTGCGCCGGCATCCACGACGTGCTGAGCAAGTCGCTCGGCTCGTCCAACCAG 293 ************************************************************ consensus_358#0 ATCAACATCGTCCACGCCACGGTCGAGGCGCTGCGCTCCCTCGAGGAGCCGGAGGCCGTC 480 consensus_358#1 ATCAACATCGTCCACGCCACGGTCGAGGCGCTGCGCTCCCTCGAGGAGCCGGAGGCCGTC 353 ************************************************************ consensus_358#0 GCGGCCCGTCGCGGCCTGCCNCGTGGAGGACGTCGCCCCGGCGGCGCTGCTCAAGGCCCG 540 consensus_358#1 GCGGCCCGTCGNNNNNNNNNNN-TGGAGGACGTCGCCCCGGCGGCGCTGCTCAAGGCCCG 412 *********** * ************************************* consensus_358#0 GGCCGAGGTGCCCGACGGCGTGAGNCGGGGAGGTGGCTTCCTGATGGCGCACCTCAAGGT 600 consensus_358#1 GGCCGAGGTGCCCGACGGCGTGAGCCGGG-AGGTGGCTTCCTGATGGCGCACCTCAAGGT 471 ************************ **** ****************************** consensus_358#0 CGAGCAGAAGAAGTCCGGCATCGGCTGCAAGCAGAACCAGCGCGACACCCTGCGCTCGCT 660 consensus_358#1 CGAGCAGAAGAAGTCCGGCATCGGCTGCAAGCAGAACCAGCGCGAGGATCGGTGACGTGG 531 ********************************************* * * * consensus_358#0 GGGTCT---------------------------------------- 666 consensus_358#1 TCGTCAAGGAGGACCGGCCCGAGTTCCGGTCCTCGTGCCGAGTTNT 577 *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||