cluster # 358

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Schistosoma mansoni
cluster # 358 cluster # 358 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_358#0 length = 666 sequences # 1

consensus_358#1 length = 577 sequences # 1

consensusID : consensus_358#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 666
fasta sequence

                              [GGCCGCGGCGGCCGTGACGGTGGTCGCGGTGGCCAGCAGGAGAAGAGCCAGTACATCGAGCGCGTCGTGGCCATCAACCGCGTCGCCAAGGTCGTCAAGGGTGGTCGTCGCTTCAGCTTCACCGCCCTGGTGATCGTCGGTGACGGCGACGGCCTGGTCGGCGTCGGCTACGGCAAGGCGAAGGAGGTGCCGGCCGCCATCCAGAAGGGCGTGGAGGAGGCCAAGAAGCACTTCTTCCGCGTGCCCCGCATCCAGGGCACCATCCCGCACCCCGTCCAGGGCGAGAAGGCCGCAGGCGTCGTCCTGCTGCGTCCCGCGTCGCCCGGTACCGGTGTCATCGCCGGTGGTCCGGTGCGTGCGGTGCTCGAGTGCGCCGGCATCCACGACGTGCTGAGCAAGTCGCTCGGCTCGTCCAACCAGATCAACATCGTCCACGCCACGGTCGAGGCGCTGCGCTCCCTCGAGGAGCCGGAGGCCGTCGCGGCCCGTCGCGGCCTGCCNCGTGGAGGACGTCGCCCCGGCGGCGCTGCTCAAGGCCCGGGCCGAGGTGCCCGACGGCGTGAGNCGGGGAGGTGGCTTCCTGATGGCGCACCTCAAGGTCGAGCAGAAGAAGTCCGGCATCGGCTGCAAGCAGAACCAGCGCGACACCCTGCGCTCGCTGGGTCT]

[+] EMBL CD074723             [GGCCGCGGCGGCCGTGACGGTGGTCGCGGTGGCCAGCAGGAGAAGAGCCAGTACATCGAGCGCGTCGTGGCCATCAACCGCGTCGCCAAGGTCGTCAAGGGTGGTCGTCGCTTCAGCTTCACCGCCCTGGTGATCGTCGGTGACGGCGACGGCCTGGTCGGCGTCGGCTACGGCAAGGCGAAGGAGGTGCCGGCCGCCATCCAGAAGGGCGTGGAGGAGGCCAAGAAGCACTTCTTCCGCGTGCCCCGCATCCAGGGCACCATCCCGCACCCCGTCCAGGGCGAGAAGGCCGCAGGCGTCGTCCTGCTGCGTCCCGCGTCGCCCGGTACCGGTGTCATCGCCGGTGGTCCGGTGCGTGCGGTGCTCGAGTGCGCCGGCATCCACGACGTGCTGAGCAAGTCGCTCGGCTCGTCCAACCAGATCAACATCGTCCACGCCACGGTCGAGGCGCTGCGCTCCCTCGAGGAGCCGGAGGCCGTCGCGGCCCGTCGCGGCCTGCCNCGTGGAGGACGTCGCCCCGGCGGCGCTGCTCAAGGCCCGGGCCGAGGTGCCCGACGGCGTGAGNCGGGGAGGTGGCTTCCTGATGGCGCACCTCAAGGTCGAGCAGAAGAAGTCCGGCATCGGCTGCAAGCAGAACCAGCGCGACACCCTGCGCTCGCTGGGTCT]




>consensus_358#0
GGCCGCGGCGGCCGTGACGGTGGTCGCGGTGGCCAGCAGGAGAAGAGCCAGTACATCGAG
CGCGTCGTGGCCATCAACCGCGTCGCCAAGGTCGTCAAGGGTGGTCGTCGCTTCAGCTTC
ACCGCCCTGGTGATCGTCGGTGACGGCGACGGCCTGGTCGGCGTCGGCTACGGCAAGGCG
AAGGAGGTGCCGGCCGCCATCCAGAAGGGCGTGGAGGAGGCCAAGAAGCACTTCTTCCGC
GTGCCCCGCATCCAGGGCACCATCCCGCACCCCGTCCAGGGCGAGAAGGCCGCAGGCGTC
GTCCTGCTGCGTCCCGCGTCGCCCGGTACCGGTGTCATCGCCGGTGGTCCGGTGCGTGCG
GTGCTCGAGTGCGCCGGCATCCACGACGTGCTGAGCAAGTCGCTCGGCTCGTCCAACCAG
ATCAACATCGTCCACGCCACGGTCGAGGCGCTGCGCTCCCTCGAGGAGCCGGAGGCCGTC
GCGGCCCGTCGCGGCCTGCCNCGTGGAGGACGTCGCCCCGGCGGCGCTGCTCAAGGCCCG
GGCCGAGGTGCCCGACGGCGTGAGNCGGGGAGGTGGCTTCCTGATGGCGCACCTCAAGGT
CGAGCAGAAGAAGTCCGGCATCGGCTGCAAGCAGAACCAGCGCGACACCCTGCGCTCGCT
GGGTCT

consensusID : consensus_358#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 577
fasta sequence

                              [AGGGTGGTCGTCGCTTCAGCTTCACCGCCNTGGTGATCGTCGGTGACGGCGACGGCCTGGTCGGCGTCGGCATCCAGAAGGGCGTGGAGGAGGCCAAGAAGCACTTCTTCCGCGTGCCCCGCATCCAGGGCACCATCCCGCACCCCGTCCAGGGCGAGAAGGCCGCAGGCGTCGTCCTGCTGCGTCCCGCGTCGCCCGGTACCGGTGTCNNNNNNNNTGGTCCGGTGCGTGCGGTGCTCGAGTGCGCCGGCATCCACGACGTGCTGAGCAAGTCGCTCGGCTCGTCCAACCAGATCAACATCGTCCACGCCACGGTCGAGGCGCTGCGCTCCCTCGAGGAGCCGGAGGCCGTCGCGGCCCGTCGNNNNNNNNNNNTGGAGGACGTCGCCCCGGCGGCGCTGCTCAAGGCCCGGGCCGAGGTGCCCGACGGCGTGAGCCGGGAGGTGGCTTCCTGATGGCGCACCTCAAGGTCGAGCAGAAGAAGTCCGGCATCGGCTGCAAGCAGAACCAGCGCGAGGATCGGTGACGTGGTCGTCAAGGAGGACCGGCCCGAGTTCCGGTCCTCGTGCCGAGTTNT]

[-] EMBL CD080891             [AGGGTGGTCGTCGCTTCAGCTTCACCGCCNTGGTGATCGTCGGTGACGGCGACGGCCTGGTCGGCGTCGGCATCCAGAAGGGCGTGGAGGAGGCCAAGAAGCACTTCTTCCGCGTGCCCCGCATCCAGGGCACCATCCCGCACCCCGTCCAGGGCGAGAAGGCCGCAGGCGTCGTCCTGCTGCGTCCCGCGTCGCCCGGTACCGGTGTCNNNNNNNNTGGTCCGGTGCGTGCGGTGCTCGAGTGCGCCGGCATCCACGACGTGCTGAGCAAGTCGCTCGGCTCGTCCAACCAGATCAACATCGTCCACGCCACGGTCGAGGCGCTGCGCTCCCTCGAGGAGCCGGAGGCCGTCGCGGCCCGTCGNNNNNNNNNNNTGGAGGACGTCGCCCCGGCGGCGCTGCTCAAGGCCCGGGCCGAGGTGCCCGACGGCGTGAGCCGGGAGGTGGCTTCCTGATGGCGCACCTCAAGGTCGAGCAGAAGAAGTCCGGCATCGGCTGCAAGCAGAACCAGCGCGAGGATCGGTGACGTGGTCGTCAAGGAGGACCGGCCCGAGTTCCGGTCCTCGTGCCGAGTTNT]




>consensus_358#1
AGGGTGGTCGTCGCTTCAGCTTCACCGCCNTGGTGATCGTCGGTGACGGCGACGGCCTGG
TCGGCGTCGGCATCCAGAAGGGCGTGGAGGAGGCCAAGAAGCACTTCTTCCGCGTGCCCC
GCATCCAGGGCACCATCCCGCACCCCGTCCAGGGCGAGAAGGCCGCAGGCGTCGTCCTGC
TGCGTCCCGCGTCGCCCGGTACCGGTGTCNNNNNNNNTGGTCCGGTGCGTGCGGTGCTCG
AGTGCGCCGGCATCCACGACGTGCTGAGCAAGTCGCTCGGCTCGTCCAACCAGATCAACA
TCGTCCACGCCACGGTCGAGGCGCTGCGCTCCCTCGAGGAGCCGGAGGCCGTCGCGGCCC
GTCGNNNNNNNNNNNTGGAGGACGTCGCCCCGGCGGCGCTGCTCAAGGCCCGGGCCGAGG
TGCCCGACGGCGTGAGCCGGGAGGTGGCTTCCTGATGGCGCACCTCAAGGTCGAGCAGAA
GAAGTCCGGCATCGGCTGCAAGCAGAACCAGCGCGAGGATCGGTGACGTGGTCGTCAAGG
AGGACCGGCCCGAGTTCCGGTCCTCGTGCCGAGTTNT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_358#0      GGCCGCGGCGGCCGTGACGGTGGTCGCGGTGGCCAGCAGGAGAAGAGCCAGTACATCGAG 60
consensus_358#1      ------------------------------------------------------------
                                                                                 

consensus_358#0      CGCGTCGTGGCCATCAACCGCGTCGCCAAGGTCGTCAAGGGTGGTCGTCGCTTCAGCTTC 120
consensus_358#1      -------------------------------------AGGGTGGTCGTCGCTTCAGCTTC 23
                                                          ***********************

consensus_358#0      ACCGCCCTGGTGATCGTCGGTGACGGCGACGGCCTGGTCGGCGTCGGCTACGGCAAGGCG 180
consensus_358#1      ACCGCCNTGGTGATCGTCGGTGACGGCGACGGCCTGGTCGGCGTCGGC------------ 71
                     ****** *****************************************            

consensus_358#0      AAGGAGGTGCCGGCCGCCATCCAGAAGGGCGTGGAGGAGGCCAAGAAGCACTTCTTCCGC 240
consensus_358#1      ------------------ATCCAGAAGGGCGTGGAGGAGGCCAAGAAGCACTTCTTCCGC 113
                                       ******************************************

consensus_358#0      GTGCCCCGCATCCAGGGCACCATCCCGCACCCCGTCCAGGGCGAGAAGGCCGCAGGCGTC 300
consensus_358#1      GTGCCCCGCATCCAGGGCACCATCCCGCACCCCGTCCAGGGCGAGAAGGCCGCAGGCGTC 173
                     ************************************************************

consensus_358#0      GTCCTGCTGCGTCCCGCGTCGCCCGGTACCGGTGTCATCGCCGGTGGTCCGGTGCGTGCG 360
consensus_358#1      GTCCTGCTGCGTCCCGCGTCGCCCGGTACCGGTGTCNNNNNNNNTGGTCCGGTGCGTGCG 233
                     ************************************        ****************

consensus_358#0      GTGCTCGAGTGCGCCGGCATCCACGACGTGCTGAGCAAGTCGCTCGGCTCGTCCAACCAG 420
consensus_358#1      GTGCTCGAGTGCGCCGGCATCCACGACGTGCTGAGCAAGTCGCTCGGCTCGTCCAACCAG 293
                     ************************************************************

consensus_358#0      ATCAACATCGTCCACGCCACGGTCGAGGCGCTGCGCTCCCTCGAGGAGCCGGAGGCCGTC 480
consensus_358#1      ATCAACATCGTCCACGCCACGGTCGAGGCGCTGCGCTCCCTCGAGGAGCCGGAGGCCGTC 353
                     ************************************************************

consensus_358#0      GCGGCCCGTCGCGGCCTGCCNCGTGGAGGACGTCGCCCCGGCGGCGCTGCTCAAGGCCCG 540
consensus_358#1      GCGGCCCGTCGNNNNNNNNNNN-TGGAGGACGTCGCCCCGGCGGCGCTGCTCAAGGCCCG 412
                     ***********         *  *************************************

consensus_358#0      GGCCGAGGTGCCCGACGGCGTGAGNCGGGGAGGTGGCTTCCTGATGGCGCACCTCAAGGT 600
consensus_358#1      GGCCGAGGTGCCCGACGGCGTGAGCCGGG-AGGTGGCTTCCTGATGGCGCACCTCAAGGT 471
                     ************************ **** ******************************

consensus_358#0      CGAGCAGAAGAAGTCCGGCATCGGCTGCAAGCAGAACCAGCGCGACACCCTGCGCTCGCT 660
consensus_358#1      CGAGCAGAAGAAGTCCGGCATCGGCTGCAAGCAGAACCAGCGCGAGGATCGGTGACGTGG 531
                     *********************************************    * * *      

consensus_358#0      GGGTCT---------------------------------------- 666
consensus_358#1      TCGTCAAGGAGGACCGGCCCGAGTTCCGGTCCTCGTGCCGAGTTNT 577
                       ***