These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3583#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [GTCGCTGCTTTGGCTGCGACCAATCCATTTGTTCCGTATGTCGGTGGTGGTTATCCCAATCCTATATGTACTAGCCCCACAGTTGGTGGACCAATTCAATACAATGCCATTAATAATGCATTACGACCAAATATGAACTTTCCTATTATTGGCTCATCGCCTGCTCCACCGCCTCCACCAATGTATTTTGTTCCTACTGGATATCGTGATCGAAATACTAGTGCCTCCACGGTTGTTACTAGTCGTGGTACATCAGTTATGACACATTTAGCGGTATTAGGTCCTCAGAATTCATTGAATGAAGAAGTTGTAAAAATGACAACAGGTCCTATCACGTCTCTTTCGACTACTACTATTACTACTTCTGCTAACACTACTATGACACTATCGTCTAATAATAGTAATTCATCGAATGGATTGAATTCTATCGACAATGATATTACTATTTAGTCCGGTGTTAATGTCAACTACTTCA] [+] EMBL CD193092 [GTCGCTGCTTTGGCTGCGACCAATCCATTTGTTCCGTATGTCGGTGGTGGTTATCCCAATCCTATATGTACTAGCCCCACAGTTGGTGGACCAATTCAATACAATGCCATTAATAATGCATTACGACCAAATATGAACTTTCCTATTATTGGCTCATCGCCTGCTCCACCGCCTCCACCAATGTATTTTGTTCCTACTGGATATCGTGATCGAAATACTAGTGCCTCCACGGTTGTTACTAGTCGTGGTACATCAGTTATGACACATTTAGCGGTATTAGGTCCTCAGAATTCATTGAATGAAGAAGTTGTAAAAATGACAACAGGTCCTATCACGTCTCTTTCGACTACTACTATTACTACTTCTGCTAACACTACTATGACACTATCGTCTAATAATAGTAATTCATCGAATGGATTGAATTCTATCGACAATGATATTACTATTTAGTCCGGTGTTAATGTCAACTACTTCA] consensusID : consensus_3583#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 169 fasta sequence [TCGTCTCTTAGAAACAGAGCTATTACTACTTCTGCTAACACTACTATGACACTATCGTCTAATAATAGTAATTCATCGAATGAATTGAATTCTATCGACGATGATATTACTATTAGTCCCGGTGTTAATGTCACTACTTCATTAGCTTACGCATGTGCTTCAAGTGGGG] [-] EMBL CD169173 [TCGTCTCTTAGAAACAGAGCTATTACTACTTCTGCTAACACTACTATGACACTATCGTCTAATAATAGTAATTCATCGAATGAATTGAATTCTATCGACGATGATATTACTATTAGTCCCGGTGTTAATGTCACTACTTCATTAGCTTACGCATGTGCTTCAAGTGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3583#0 GTCGCTGCTTTGGCTGCGACCAATCCATTTGTTCCGTATGTCGGTGGTGGTTATCCCAAT 60 consensus_3583#1 ------------------------------------------------------------ consensus_3583#0 CCTATATGTACTAGCCCCACAGTTGGTGGACCAATTCAATACAATGCCATTAATAATGCA 120 consensus_3583#1 ------------------------------------------------------------ consensus_3583#0 TTACGACCAAATATGAACTTTCCTATTATTGGCTCATCGCCTGCTCCACCGCCTCCACCA 180 consensus_3583#1 ------------------------------------------------------------ consensus_3583#0 ATGTATTTTGTTCCTACTGGATATCGTGATCGAAATACTAGTGCCTCCACGGTTGTTACT 240 consensus_3583#1 ------------------------------------------------------------ consensus_3583#0 AGTCGTGGTACATCAGTTATGACACATTTAGCGGTATTAGGTCCTCAGAATTCATTGAAT 300 consensus_3583#1 ------------------------------------------------------------ consensus_3583#0 GAAGAAGTTGTAAAAATGACAACAGGTCCTATCACGTCTCTTTCGACTACTACTATTACT 360 consensus_3583#1 ---------------------------------TCGTCTCTTAGAAACAGAGCTATTACT 27 ******** * * ******** consensus_3583#0 ACTTCTGCTAACACTACTATGACACTATCGTCTAATAATAGTAATTCATCGAATGGATTG 420 consensus_3583#1 ACTTCTGCTAACACTACTATGACACTATCGTCTAATAATAGTAATTCATCGAATGAATTG 87 ******************************************************* **** consensus_3583#0 AATTCTATCGACAATGATATTACTATTTAGTCCGGTGTTAATGTCAACTACTTCA----- 475 consensus_3583#1 AATTCTATCGACGATGATATTACTATTAGTCCCGGTGTTAATGTCA-CTACTTCATTAGC 146 ************ ************** *************** ******** consensus_3583#0 ----------------------- consensus_3583#1 TTACGCATGTGCTTCAAGTGGGG 169 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||