cluster # 3583

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Schistosoma mansoni
cluster # 3583 cluster # 3583 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3583#0 length = 475 sequences # 1

consensus_3583#1 length = 169 sequences # 1

consensusID : consensus_3583#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 475
fasta sequence

                              [GTCGCTGCTTTGGCTGCGACCAATCCATTTGTTCCGTATGTCGGTGGTGGTTATCCCAATCCTATATGTACTAGCCCCACAGTTGGTGGACCAATTCAATACAATGCCATTAATAATGCATTACGACCAAATATGAACTTTCCTATTATTGGCTCATCGCCTGCTCCACCGCCTCCACCAATGTATTTTGTTCCTACTGGATATCGTGATCGAAATACTAGTGCCTCCACGGTTGTTACTAGTCGTGGTACATCAGTTATGACACATTTAGCGGTATTAGGTCCTCAGAATTCATTGAATGAAGAAGTTGTAAAAATGACAACAGGTCCTATCACGTCTCTTTCGACTACTACTATTACTACTTCTGCTAACACTACTATGACACTATCGTCTAATAATAGTAATTCATCGAATGGATTGAATTCTATCGACAATGATATTACTATTTAGTCCGGTGTTAATGTCAACTACTTCA]

[+] EMBL CD193092             [GTCGCTGCTTTGGCTGCGACCAATCCATTTGTTCCGTATGTCGGTGGTGGTTATCCCAATCCTATATGTACTAGCCCCACAGTTGGTGGACCAATTCAATACAATGCCATTAATAATGCATTACGACCAAATATGAACTTTCCTATTATTGGCTCATCGCCTGCTCCACCGCCTCCACCAATGTATTTTGTTCCTACTGGATATCGTGATCGAAATACTAGTGCCTCCACGGTTGTTACTAGTCGTGGTACATCAGTTATGACACATTTAGCGGTATTAGGTCCTCAGAATTCATTGAATGAAGAAGTTGTAAAAATGACAACAGGTCCTATCACGTCTCTTTCGACTACTACTATTACTACTTCTGCTAACACTACTATGACACTATCGTCTAATAATAGTAATTCATCGAATGGATTGAATTCTATCGACAATGATATTACTATTTAGTCCGGTGTTAATGTCAACTACTTCA]




>consensus_3583#0
GTCGCTGCTTTGGCTGCGACCAATCCATTTGTTCCGTATGTCGGTGGTGGTTATCCCAAT
CCTATATGTACTAGCCCCACAGTTGGTGGACCAATTCAATACAATGCCATTAATAATGCA
TTACGACCAAATATGAACTTTCCTATTATTGGCTCATCGCCTGCTCCACCGCCTCCACCA
ATGTATTTTGTTCCTACTGGATATCGTGATCGAAATACTAGTGCCTCCACGGTTGTTACT
AGTCGTGGTACATCAGTTATGACACATTTAGCGGTATTAGGTCCTCAGAATTCATTGAAT
GAAGAAGTTGTAAAAATGACAACAGGTCCTATCACGTCTCTTTCGACTACTACTATTACT
ACTTCTGCTAACACTACTATGACACTATCGTCTAATAATAGTAATTCATCGAATGGATTG
AATTCTATCGACAATGATATTACTATTTAGTCCGGTGTTAATGTCAACTACTTCA

consensusID : consensus_3583#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 169
fasta sequence

                              [TCGTCTCTTAGAAACAGAGCTATTACTACTTCTGCTAACACTACTATGACACTATCGTCTAATAATAGTAATTCATCGAATGAATTGAATTCTATCGACGATGATATTACTATTAGTCCCGGTGTTAATGTCACTACTTCATTAGCTTACGCATGTGCTTCAAGTGGGG]

[-] EMBL CD169173             [TCGTCTCTTAGAAACAGAGCTATTACTACTTCTGCTAACACTACTATGACACTATCGTCTAATAATAGTAATTCATCGAATGAATTGAATTCTATCGACGATGATATTACTATTAGTCCCGGTGTTAATGTCACTACTTCATTAGCTTACGCATGTGCTTCAAGTGGGG]




>consensus_3583#1
TCGTCTCTTAGAAACAGAGCTATTACTACTTCTGCTAACACTACTATGACACTATCGTCT
AATAATAGTAATTCATCGAATGAATTGAATTCTATCGACGATGATATTACTATTAGTCCC
GGTGTTAATGTCACTACTTCATTAGCTTACGCATGTGCTTCAAGTGGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3583#0      GTCGCTGCTTTGGCTGCGACCAATCCATTTGTTCCGTATGTCGGTGGTGGTTATCCCAAT 60
consensus_3583#1      ------------------------------------------------------------
                                                                                  

consensus_3583#0      CCTATATGTACTAGCCCCACAGTTGGTGGACCAATTCAATACAATGCCATTAATAATGCA 120
consensus_3583#1      ------------------------------------------------------------
                                                                                  

consensus_3583#0      TTACGACCAAATATGAACTTTCCTATTATTGGCTCATCGCCTGCTCCACCGCCTCCACCA 180
consensus_3583#1      ------------------------------------------------------------
                                                                                  

consensus_3583#0      ATGTATTTTGTTCCTACTGGATATCGTGATCGAAATACTAGTGCCTCCACGGTTGTTACT 240
consensus_3583#1      ------------------------------------------------------------
                                                                                  

consensus_3583#0      AGTCGTGGTACATCAGTTATGACACATTTAGCGGTATTAGGTCCTCAGAATTCATTGAAT 300
consensus_3583#1      ------------------------------------------------------------
                                                                                  

consensus_3583#0      GAAGAAGTTGTAAAAATGACAACAGGTCCTATCACGTCTCTTTCGACTACTACTATTACT 360
consensus_3583#1      ---------------------------------TCGTCTCTTAGAAACAGAGCTATTACT 27
                                                        ********   *  *   ********

consensus_3583#0      ACTTCTGCTAACACTACTATGACACTATCGTCTAATAATAGTAATTCATCGAATGGATTG 420
consensus_3583#1      ACTTCTGCTAACACTACTATGACACTATCGTCTAATAATAGTAATTCATCGAATGAATTG 87
                      ******************************************************* ****

consensus_3583#0      AATTCTATCGACAATGATATTACTATTTAGTCCGGTGTTAATGTCAACTACTTCA----- 475
consensus_3583#1      AATTCTATCGACGATGATATTACTATTAGTCCCGGTGTTAATGTCA-CTACTTCATTAGC 146
                      ************ **************    *************** ********     

consensus_3583#0      -----------------------
consensus_3583#1      TTACGCATGTGCTTCAAGTGGGG 169