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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 3583 cluster # 3583       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3583#0 length = 475 sequences # 1  
consensus_3583#1 length = 169 sequences # 1  

consensusID : consensus_3583#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 475
fasta sequence
                              [GTCGCTGCTTTGGCTGCGACCAATCCATTTGTTCCGTATGTCGGTGGTGGTTATCCCAATCCTATATGTACTAGCCCCACAGTTGGTGGACCAATTCAATACAATGCCATTAATAATGCATTACGACCAAATATGAACTTTCCTATTATTGGCTCATCGCCTGCTCCACCGCCTCCACCAATGTATTTTGTTCCTACTGGATATCGTGATCGAAATACTAGTGCCTCCACGGTTGTTACTAGTCGTGGTACATCAGTTATGACACATTTAGCGGTATTAGGTCCTCAGAATTCATTGAATGAAGAAGTTGTAAAAATGACAACAGGTCCTATCACGTCTCTTTCGACTACTACTATTACTACTTCTGCTAACACTACTATGACACTATCGTCTAATAATAGTAATTCATCGAATGGATTGAATTCTATCGACAATGATATTACTATTTAGTCCGGTGTTAATGTCAACTACTTCA]

[+] EMBL CD193092             [GTCGCTGCTTTGGCTGCGACCAATCCATTTGTTCCGTATGTCGGTGGTGGTTATCCCAATCCTATATGTACTAGCCCCACAGTTGGTGGACCAATTCAATACAATGCCATTAATAATGCATTACGACCAAATATGAACTTTCCTATTATTGGCTCATCGCCTGCTCCACCGCCTCCACCAATGTATTTTGTTCCTACTGGATATCGTGATCGAAATACTAGTGCCTCCACGGTTGTTACTAGTCGTGGTACATCAGTTATGACACATTTAGCGGTATTAGGTCCTCAGAATTCATTGAATGAAGAAGTTGTAAAAATGACAACAGGTCCTATCACGTCTCTTTCGACTACTACTATTACTACTTCTGCTAACACTACTATGACACTATCGTCTAATAATAGTAATTCATCGAATGGATTGAATTCTATCGACAATGATATTACTATTTAGTCCGGTGTTAATGTCAACTACTTCA]


>consensus_3583#0 GTCGCTGCTTTGGCTGCGACCAATCCATTTGTTCCGTATGTCGGTGGTGGTTATCCCAAT CCTATATGTACTAGCCCCACAGTTGGTGGACCAATTCAATACAATGCCATTAATAATGCA TTACGACCAAATATGAACTTTCCTATTATTGGCTCATCGCCTGCTCCACCGCCTCCACCA ATGTATTTTGTTCCTACTGGATATCGTGATCGAAATACTAGTGCCTCCACGGTTGTTACT AGTCGTGGTACATCAGTTATGACACATTTAGCGGTATTAGGTCCTCAGAATTCATTGAAT GAAGAAGTTGTAAAAATGACAACAGGTCCTATCACGTCTCTTTCGACTACTACTATTACT ACTTCTGCTAACACTACTATGACACTATCGTCTAATAATAGTAATTCATCGAATGGATTG AATTCTATCGACAATGATATTACTATTTAGTCCGGTGTTAATGTCAACTACTTCA



consensusID : consensus_3583#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 169
fasta sequence
                              [TCGTCTCTTAGAAACAGAGCTATTACTACTTCTGCTAACACTACTATGACACTATCGTCTAATAATAGTAATTCATCGAATGAATTGAATTCTATCGACGATGATATTACTATTAGTCCCGGTGTTAATGTCACTACTTCATTAGCTTACGCATGTGCTTCAAGTGGGG]

[-] EMBL CD169173             [TCGTCTCTTAGAAACAGAGCTATTACTACTTCTGCTAACACTACTATGACACTATCGTCTAATAATAGTAATTCATCGAATGAATTGAATTCTATCGACGATGATATTACTATTAGTCCCGGTGTTAATGTCACTACTTCATTAGCTTACGCATGTGCTTCAAGTGGGG]


>consensus_3583#1 TCGTCTCTTAGAAACAGAGCTATTACTACTTCTGCTAACACTACTATGACACTATCGTCT AATAATAGTAATTCATCGAATGAATTGAATTCTATCGACGATGATATTACTATTAGTCCC GGTGTTAATGTCACTACTTCATTAGCTTACGCATGTGCTTCAAGTGGGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3583#0      GTCGCTGCTTTGGCTGCGACCAATCCATTTGTTCCGTATGTCGGTGGTGGTTATCCCAAT 60
consensus_3583#1      ------------------------------------------------------------
                                                                                  

consensus_3583#0      CCTATATGTACTAGCCCCACAGTTGGTGGACCAATTCAATACAATGCCATTAATAATGCA 120
consensus_3583#1      ------------------------------------------------------------
                                                                                  

consensus_3583#0      TTACGACCAAATATGAACTTTCCTATTATTGGCTCATCGCCTGCTCCACCGCCTCCACCA 180
consensus_3583#1      ------------------------------------------------------------
                                                                                  

consensus_3583#0      ATGTATTTTGTTCCTACTGGATATCGTGATCGAAATACTAGTGCCTCCACGGTTGTTACT 240
consensus_3583#1      ------------------------------------------------------------
                                                                                  

consensus_3583#0      AGTCGTGGTACATCAGTTATGACACATTTAGCGGTATTAGGTCCTCAGAATTCATTGAAT 300
consensus_3583#1      ------------------------------------------------------------
                                                                                  

consensus_3583#0      GAAGAAGTTGTAAAAATGACAACAGGTCCTATCACGTCTCTTTCGACTACTACTATTACT 360
consensus_3583#1      ---------------------------------TCGTCTCTTAGAAACAGAGCTATTACT 27
                                                        ********   *  *   ********

consensus_3583#0      ACTTCTGCTAACACTACTATGACACTATCGTCTAATAATAGTAATTCATCGAATGGATTG 420
consensus_3583#1      ACTTCTGCTAACACTACTATGACACTATCGTCTAATAATAGTAATTCATCGAATGAATTG 87
                      ******************************************************* ****

consensus_3583#0      AATTCTATCGACAATGATATTACTATTTAGTCCGGTGTTAATGTCAACTACTTCA----- 475
consensus_3583#1      AATTCTATCGACGATGATATTACTATTAGTCCCGGTGTTAATGTCA-CTACTTCATTAGC 146
                      ************ **************    *************** ********     

consensus_3583#0      -----------------------
consensus_3583#1      TTACGCATGTGCTTCAAGTGGGG 169
                                             




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)