cluster # 3591

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Schistosoma mansoni
cluster # 3591 cluster # 3591 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3591#0 length = 592 sequences # 1

consensus_3591#1 length = 168 sequences # 1

consensusID : consensus_3591#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 592
fasta sequence

                              [TATCTTGAATTAATTTTTGGGGAGTAAATGGTCACTGACTTTGGAAGAAGTGCTTTCACACCCATCTAATTAGTAATAGGAAGTAGATAACGTATTTCGATACACTGATGAATATATATTATTTGTGATATCCCAATGAGTGGGAAATTGTACTTCTGACTAAATGTAAATAAACGAAAAATTCCGATTAACTTTCTGCCCAGTGCACAATTTACTTGAGACCAACCTTGGCATCGGTATTTCGATGTGCTTTATCATCCTCATAACATATTCGACACTTGAAAGTGAAGAGGTTACTAGCAGTGGTATGGGAAAATCTTCGTCTCTGAAGTATATCTTTCCATGTTCGACACTAAAACACTGTAAGTGTTGTGCGTCTTATCGAACAAAACGAACTTAAAGTCCAAATACGCTCAAGACGTTTCCTCTTGACAGTGCACAACATACCCATATGTCATAAAACATTGACCAACCTGAGAAATAATAGTTTAGGTCGACTGAAATGATTATTTTCAGAAGTCGTCAACAGTTTAACGATTAATTTACCCGTTAAGTGCGCTGACACCATGAAATGTGCATTGACGTTGCCCAA]

[+] EMBL CD169242             [TATCTTGAATTAATTTTTGGGGAGTAAATGGTCACTGACTTTGGAAGAAGTGCTTTCACACCCATCTAATTAGTAATAGGAAGTAGATAACGTATTTCGATACACTGATGAATATATATTATTTGTGATATCCCAATGAGTGGGAAATTGTACTTCTGACTAAATGTAAATAAACGAAAAATTCCGATTAACTTTCTGCCCAGTGCACAATTTACTTGAGACCAACCTTGGCATCGGTATTTCGATGTGCTTTATCATCCTCATAACATATTCGACACTTGAAAGTGAAGAGGTTACTAGCAGTGGTATGGGAAAATCTTCGTCTCTGAAGTATATCTTTCCATGTTCGACACTAAAACACTGTAAGTGTTGTGCGTCTTATCGAACAAAACGAACTTAAAGTCCAAATACGCTCAAGACGTTTCCTCTTGACAGTGCACAACATACCCATATGTCATAAAACATTGACCAACCTGAGAAATAATAGTTTAGGTCGACTGAAATGATTATTTTCAGAAGTCGTCAACAGTTTAACGATTAATTTACCCGTTAAGTGCGCTGACACCATGAAATGTGCATTGACGTTGCCCAA]




>consensus_3591#0
TATCTTGAATTAATTTTTGGGGAGTAAATGGTCACTGACTTTGGAAGAAGTGCTTTCACA
CCCATCTAATTAGTAATAGGAAGTAGATAACGTATTTCGATACACTGATGAATATATATT
ATTTGTGATATCCCAATGAGTGGGAAATTGTACTTCTGACTAAATGTAAATAAACGAAAA
ATTCCGATTAACTTTCTGCCCAGTGCACAATTTACTTGAGACCAACCTTGGCATCGGTAT
TTCGATGTGCTTTATCATCCTCATAACATATTCGACACTTGAAAGTGAAGAGGTTACTAG
CAGTGGTATGGGAAAATCTTCGTCTCTGAAGTATATCTTTCCATGTTCGACACTAAAACA
CTGTAAGTGTTGTGCGTCTTATCGAACAAAACGAACTTAAAGTCCAAATACGCTCAAGAC
GTTTCCTCTTGACAGTGCACAACATACCCATATGTCATAAAACATTGACCAACCTGAGAA
ATAATAGTTTAGGTCGACTGAAATGATTATTTTCAGAAGTCGTCAACAGTTTAACGATTA
ATTTACCCGTTAAGTGCGCTGACACCATGAAATGTGCATTGACGTTGCCCAA

consensusID : consensus_3591#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 168
fasta sequence

                              [CCTGCGTCTTGTTGGGCAACGTCAATGCTCTTTTCATGGTGTCAGCGCACTTAACGGGGATGGAATAAACAGCAGTATCAAGTGGATGTCAGATAAGGTTAAAGGCAAGCCTAAACAAAGGCCACCAAAACAGCTTGAAATCCCATAAGTGCTCGTTGTAAAACATGT]

[+] EMBL AA931037             [CCTGCGTCTTGTTGGGCAACGTCAATGCTCTTTTCATGGTGTCAGCGCACTTAACGGGGATGGAATAAACAGCAGTATCAAGTGGATGTCAGATAAGGTTAAAGGCAAGCCTAAACAAAGGCCACCAAAACAGCTTGAAATCCCATAAGTGCTCGTTGTAAAACATGT]




>consensus_3591#1
CCTGCGTCTTGTTGGGCAACGTCAATGCTCTTTTCATGGTGTCAGCGCACTTAACGGGGA
TGGAATAAACAGCAGTATCAAGTGGATGTCAGATAAGGTTAAAGGCAAGCCTAAACAAAG
GCCACCAAAACAGCTTGAAATCCCATAAGTGCTCGTTGTAAAACATGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3591#0      TATCTTGAATTAATTTTTGGGGAGTAAATGGTCACTGACTTTGGAAGAAGTGCTTTCACA 60
consensus_3591#1      ------------------------------------------------------------
                                                                                  

consensus_3591#0      CCCATCTAATTAGTAATAGGAAGTAGATAACGTATTTCGATACACTGATGAATATATATT 120
consensus_3591#1      ------------------------------------------------------------
                                                                                  

consensus_3591#0      ATTTGTGATATCCCAATGAGTGGGAAATTGTACTTCTGACTAAATGTAAATAAACGAAAA 180
consensus_3591#1      ------------------------------------------------------------
                                                                                  

consensus_3591#0      ATTCCGATTAACTTTCTGCCCAGTGCACAATTTACTTGAGACCAACCTTGGCATCGGTAT 240
consensus_3591#1      ---------------------------------------------CCTGCGTCTTGTTGG 15
                                                                   ***  *  * * *  

consensus_3591#0      TTCGATGTGCTTTATCATCCTCATAACATATTCGACACTTGAAAGTGAAGAGGTTACTAG 300
consensus_3591#1      G-CAACGT-CAATGCTCTTTTCATGGTGTCAGCG-CACTTAACGGGGATGGAATAAACAG 72
                        * * ** *  *    *  ****    *   ** ***** *  * ** *   * *  **

consensus_3591#0      CAGTGGTATGGGAAAATCTTCGTCTCTGAAGTATATCTTTCCATGTTCGACACTAAAACA 360
consensus_3591#1      CAGTATCAAGTGGATGTCAGATAAGGTTAAAGGCAAGCCTAAACAAAGGCCACCAAAACA 132
                      ****   * * * *  **        * **    *    *  *     * *** ******

consensus_3591#0      -CTGTAAGTGTTGTGCGT-CTTATCGAACAAAACGAACTTAAAGTCCAAATACGCTCAAG 418
consensus_3591#1      GCTTGAAATCCCATAAGTGCTCGTTGTAAAACATGT------------------------ 168
                       **  ** *    *  ** **  * * * ** * *                         

consensus_3591#0      ACGTTTCCTCTTGACAGTGCACAACATACCCATATGTCATAAAACATTGACCAACCTGAG 478
consensus_3591#1      ------------------------------------------------------------
                                                                                  

consensus_3591#0      AAATAATAGTTTAGGTCGACTGAAATGATTATTTTCAGAAGTCGTCAACAGTTTAACGAT 538
consensus_3591#1      ------------------------------------------------------------
                                                                                  

consensus_3591#0      TAATTTACCCGTTAAGTGCGCTGACACCATGAAATGTGCATTGACGTTGCCCAA 592
consensus_3591#1      ------------------------------------------------------