These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3591#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 592 fasta sequence [TATCTTGAATTAATTTTTGGGGAGTAAATGGTCACTGACTTTGGAAGAAGTGCTTTCACACCCATCTAATTAGTAATAGGAAGTAGATAACGTATTTCGATACACTGATGAATATATATTATTTGTGATATCCCAATGAGTGGGAAATTGTACTTCTGACTAAATGTAAATAAACGAAAAATTCCGATTAACTTTCTGCCCAGTGCACAATTTACTTGAGACCAACCTTGGCATCGGTATTTCGATGTGCTTTATCATCCTCATAACATATTCGACACTTGAAAGTGAAGAGGTTACTAGCAGTGGTATGGGAAAATCTTCGTCTCTGAAGTATATCTTTCCATGTTCGACACTAAAACACTGTAAGTGTTGTGCGTCTTATCGAACAAAACGAACTTAAAGTCCAAATACGCTCAAGACGTTTCCTCTTGACAGTGCACAACATACCCATATGTCATAAAACATTGACCAACCTGAGAAATAATAGTTTAGGTCGACTGAAATGATTATTTTCAGAAGTCGTCAACAGTTTAACGATTAATTTACCCGTTAAGTGCGCTGACACCATGAAATGTGCATTGACGTTGCCCAA] [+] EMBL CD169242 [TATCTTGAATTAATTTTTGGGGAGTAAATGGTCACTGACTTTGGAAGAAGTGCTTTCACACCCATCTAATTAGTAATAGGAAGTAGATAACGTATTTCGATACACTGATGAATATATATTATTTGTGATATCCCAATGAGTGGGAAATTGTACTTCTGACTAAATGTAAATAAACGAAAAATTCCGATTAACTTTCTGCCCAGTGCACAATTTACTTGAGACCAACCTTGGCATCGGTATTTCGATGTGCTTTATCATCCTCATAACATATTCGACACTTGAAAGTGAAGAGGTTACTAGCAGTGGTATGGGAAAATCTTCGTCTCTGAAGTATATCTTTCCATGTTCGACACTAAAACACTGTAAGTGTTGTGCGTCTTATCGAACAAAACGAACTTAAAGTCCAAATACGCTCAAGACGTTTCCTCTTGACAGTGCACAACATACCCATATGTCATAAAACATTGACCAACCTGAGAAATAATAGTTTAGGTCGACTGAAATGATTATTTTCAGAAGTCGTCAACAGTTTAACGATTAATTTACCCGTTAAGTGCGCTGACACCATGAAATGTGCATTGACGTTGCCCAA] consensusID : consensus_3591#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 168 fasta sequence [CCTGCGTCTTGTTGGGCAACGTCAATGCTCTTTTCATGGTGTCAGCGCACTTAACGGGGATGGAATAAACAGCAGTATCAAGTGGATGTCAGATAAGGTTAAAGGCAAGCCTAAACAAAGGCCACCAAAACAGCTTGAAATCCCATAAGTGCTCGTTGTAAAACATGT] [+] EMBL AA931037 [CCTGCGTCTTGTTGGGCAACGTCAATGCTCTTTTCATGGTGTCAGCGCACTTAACGGGGATGGAATAAACAGCAGTATCAAGTGGATGTCAGATAAGGTTAAAGGCAAGCCTAAACAAAGGCCACCAAAACAGCTTGAAATCCCATAAGTGCTCGTTGTAAAACATGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3591#0 TATCTTGAATTAATTTTTGGGGAGTAAATGGTCACTGACTTTGGAAGAAGTGCTTTCACA 60 consensus_3591#1 ------------------------------------------------------------ consensus_3591#0 CCCATCTAATTAGTAATAGGAAGTAGATAACGTATTTCGATACACTGATGAATATATATT 120 consensus_3591#1 ------------------------------------------------------------ consensus_3591#0 ATTTGTGATATCCCAATGAGTGGGAAATTGTACTTCTGACTAAATGTAAATAAACGAAAA 180 consensus_3591#1 ------------------------------------------------------------ consensus_3591#0 ATTCCGATTAACTTTCTGCCCAGTGCACAATTTACTTGAGACCAACCTTGGCATCGGTAT 240 consensus_3591#1 ---------------------------------------------CCTGCGTCTTGTTGG 15 *** * * * * consensus_3591#0 TTCGATGTGCTTTATCATCCTCATAACATATTCGACACTTGAAAGTGAAGAGGTTACTAG 300 consensus_3591#1 G-CAACGT-CAATGCTCTTTTCATGGTGTCAGCG-CACTTAACGGGGATGGAATAAACAG 72 * * ** * * * **** * ** ***** * * ** * * * ** consensus_3591#0 CAGTGGTATGGGAAAATCTTCGTCTCTGAAGTATATCTTTCCATGTTCGACACTAAAACA 360 consensus_3591#1 CAGTATCAAGTGGATGTCAGATAAGGTTAAAGGCAAGCCTAAACAAAGGCCACCAAAACA 132 **** * * * * ** * ** * * * * *** ****** consensus_3591#0 -CTGTAAGTGTTGTGCGT-CTTATCGAACAAAACGAACTTAAAGTCCAAATACGCTCAAG 418 consensus_3591#1 GCTTGAAATCCCATAAGTGCTCGTTGTAAAACATGT------------------------ 168 ** ** * * ** ** * * * ** * * consensus_3591#0 ACGTTTCCTCTTGACAGTGCACAACATACCCATATGTCATAAAACATTGACCAACCTGAG 478 consensus_3591#1 ------------------------------------------------------------ consensus_3591#0 AAATAATAGTTTAGGTCGACTGAAATGATTATTTTCAGAAGTCGTCAACAGTTTAACGAT 538 consensus_3591#1 ------------------------------------------------------------ consensus_3591#0 TAATTTACCCGTTAAGTGCGCTGACACCATGAAATGTGCATTGACGTTGCCCAA 592 consensus_3591#1 ------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||