cluster # 3608

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Schistosoma mansoni
cluster # 3608 cluster # 3608 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3608#0 length = 215 sequences # 1

consensus_3608#1 length = 185 sequences # 1

consensusID : consensus_3608#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 215
fasta sequence

                              [AGTTGTAGTAGTTGTTGTTGTTTTTCGAAAATGTGACGTGTTATTATTACTGTCATTATGATTGCCGACTGATATTAAAGTTTTTAAATGATATGGACGCTTCATTGAATTAGGTGAAATAACTTGAATACTGTTCATACTTTGTTTCCAACATCAGATGATGATAATGACGATTTTATAACATTATTATTATTAAACGATGCTGCATTATAAGT]

[+] EMBL CD195608             [AGTTGTAGTAGTTGTTGTTGTTTTTCGAAAATGTGACGTGTTATTATTACTGTCATTATGATTGCCGACTGATATTAAAGTTTTTAAATGATATGGACGCTTCATTGAATTAGGTGAAATAACTTGAATACTGTTCATACTTTGTTTCCAACATCAGATGATGATAATGACGATTTTATAACATTATTATTATTAAACGATGCTGCATTATAAGT]




>consensus_3608#0
AGTTGTAGTAGTTGTTGTTGTTTTTCGAAAATGTGACGTGTTATTATTACTGTCATTATG
ATTGCCGACTGATATTAAAGTTTTTAAATGATATGGACGCTTCATTGAATTAGGTGAAAT
AACTTGAATACTGTTCATACTTTGTTTCCAACATCAGATGATGATAATGACGATTTTATA
ACATTATTATTATTAAACGATGCTGCATTATAAGT

consensusID : consensus_3608#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 185
fasta sequence

                              [ATGCTTCTGAATCACCTCCACTATCCACTTATAATGCAGCATCGTTTAATAATAATAATGTTATAAAATCGTCATTATCATCATCTGATTGTTGGAAACAAAGTATGAACAGTATTCAAGATGATAAACAATGACCTTTGATAACACTTCAATGCACAAATTGTGGGTCGTCGCAACACTTGCTT]

[+] EMBL CD169436             [ATGCTTCTGAATCACCTCCACTATCCACTTATAATGCAGCATCGTTTAATAATAATAATGTTATAAAATCGTCATTATCATCATCTGATTGTTGGAAACAAAGTATGAACAGTATTCAAGATGATAAACAATGACCTTTGATAACACTTCAATGCACAAATTGTGGGTCGTCGCAACACTTGCTT]




>consensus_3608#1
ATGCTTCTGAATCACCTCCACTATCCACTTATAATGCAGCATCGTTTAATAATAATAATG
TTATAAAATCGTCATTATCATCATCTGATTGTTGGAAACAAAGTATGAACAGTATTCAAG
ATGATAAACAATGACCTTTGATAACACTTCAATGCACAAATTGTGGGTCGTCGCAACACT
TGCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3608#0      AGTTGTAGTAGTTGTTGTTGTTTTTCGAAAATGTGACGTGTTATTATTACTGTCATTATG 60
consensus_3608#1      -----------------------------------ATGCTTCTGAATCACCTCCACTAT- 24
                                                         * *  *    ** **   ** *** 

consensus_3608#0      ATTGCCGACTGATATTAAAGTTT--TTAAATGATATGGACGCTTCATTGAATTAGGTGAA 118
consensus_3608#1      -----CCACTTATAATGCAGCATCGTTTAATAATAATAATGTTATAAAATCGTCATTATC 79
                           * *** *** *  **  *  ** *** ***   * * *  *      *   *   

consensus_3608#0      ATAACTTGAATACTGTTCATACTTTGTTTCCAACATC--AGATGATGA-TAATGACGATT 175
consensus_3608#1      ATCATCTGATTGTTGGAAACAAAGTATGAACAGTATTCAAGATGATAAACAATGACC-TT 138
                      ** *  *** *  **   * *   * *   **  **   ******* *  ******  **

consensus_3608#0      TTATAACATTATTATTATTAAACGATGCTGCATTATAAGT------- 215
consensus_3608#1      TGATAACACTTCAATGCACAAATTGTGGGTCGTCGCAACACTTGCTT 185
                      * ****** *   **    ***   **   * *   **