These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3608#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 215 fasta sequence [AGTTGTAGTAGTTGTTGTTGTTTTTCGAAAATGTGACGTGTTATTATTACTGTCATTATGATTGCCGACTGATATTAAAGTTTTTAAATGATATGGACGCTTCATTGAATTAGGTGAAATAACTTGAATACTGTTCATACTTTGTTTCCAACATCAGATGATGATAATGACGATTTTATAACATTATTATTATTAAACGATGCTGCATTATAAGT] [+] EMBL CD195608 [AGTTGTAGTAGTTGTTGTTGTTTTTCGAAAATGTGACGTGTTATTATTACTGTCATTATGATTGCCGACTGATATTAAAGTTTTTAAATGATATGGACGCTTCATTGAATTAGGTGAAATAACTTGAATACTGTTCATACTTTGTTTCCAACATCAGATGATGATAATGACGATTTTATAACATTATTATTATTAAACGATGCTGCATTATAAGT] consensusID : consensus_3608#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 185 fasta sequence [ATGCTTCTGAATCACCTCCACTATCCACTTATAATGCAGCATCGTTTAATAATAATAATGTTATAAAATCGTCATTATCATCATCTGATTGTTGGAAACAAAGTATGAACAGTATTCAAGATGATAAACAATGACCTTTGATAACACTTCAATGCACAAATTGTGGGTCGTCGCAACACTTGCTT] [+] EMBL CD169436 [ATGCTTCTGAATCACCTCCACTATCCACTTATAATGCAGCATCGTTTAATAATAATAATGTTATAAAATCGTCATTATCATCATCTGATTGTTGGAAACAAAGTATGAACAGTATTCAAGATGATAAACAATGACCTTTGATAACACTTCAATGCACAAATTGTGGGTCGTCGCAACACTTGCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3608#0 AGTTGTAGTAGTTGTTGTTGTTTTTCGAAAATGTGACGTGTTATTATTACTGTCATTATG 60 consensus_3608#1 -----------------------------------ATGCTTCTGAATCACCTCCACTAT- 24 * * * ** ** ** *** consensus_3608#0 ATTGCCGACTGATATTAAAGTTT--TTAAATGATATGGACGCTTCATTGAATTAGGTGAA 118 consensus_3608#1 -----CCACTTATAATGCAGCATCGTTTAATAATAATAATGTTATAAAATCGTCATTATC 79 * *** *** * ** * ** *** *** * * * * * * consensus_3608#0 ATAACTTGAATACTGTTCATACTTTGTTTCCAACATC--AGATGATGA-TAATGACGATT 175 consensus_3608#1 ATCATCTGATTGTTGGAAACAAAGTATGAACAGTATTCAAGATGATAAACAATGACC-TT 138 ** * *** * ** * * * * ** ** ******* * ****** ** consensus_3608#0 TTATAACATTATTATTATTAAACGATGCTGCATTATAAGT------- 215 consensus_3608#1 TGATAACACTTCAATGCACAAATTGTGGGTCGTCGCAACACTTGCTT 185 * ****** * ** *** ** * * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||