cluster # 362

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Schistosoma mansoni
cluster # 362 cluster # 362 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_362#0 length = 417 sequences # 1

consensus_362#1 length = 209 sequences # 1

consensusID : consensus_362#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 417
fasta sequence

                              [TTATTGGGTATTTTATTTCATTTGTTCATTATACTGACTTTCATAACAGGGAATTAAATAATAAACATCAAGTAGCAACTCAGTATTTGAAATAAATATTATAAGAGAAGTAAACGAAAACTGATACACACACAGATAAAGAGAGAGAGAGAAGAAAATAATCAAAGGAATTTAGATCGAGGTGCAATAACTAATTAAATTTTTGTGGTACTTAAGCAGGTTTGTATTTAATTTGCCAAGTTAGAAATTAGGTAAACTGATAACATAACATTGATATTATTCAACAAACATAATAATAACCATGATAGAAGTAGGGGGGTAATGAAGTTTTCATTCGAATAGTGATCTACACAATTCTACAATGATCCGACATCAAGTTTAGAGAGTGGATAAATTGAAAAGATTGAAACCACAAGA]

[+] EMBL AI977086             [TTATTGGGTATTTTATTTCATTTGTTCATTATACTGACTTTCATAACAGGGAATTAAATAATAAACATCAAGTAGCAACTCAGTATTTGAAATAAATATTATAAGAGAAGTAAACGAAAACTGATACACACACAGATAAAGAGAGAGAGAGAAGAAAATAATCAAAGGAATTTAGATCGAGGTGCAATAACTAATTAAATTTTTGTGGTACTTAAGCAGGTTTGTATTTAATTTGCCAAGTTAGAAATTAGGTAAACTGATAACATAACATTGATATTATTCAACAAACATAATAATAACCATGATAGAAGTAGGGGGGTAATGAAGTTTTCATTCGAATAGTGATCTACACAATTCTACAATGATCCGACATCAAGTTTAGAGAGTGGATAAATTGAAAAGATTGAAACCACAAGA]




>consensus_362#0
TTATTGGGTATTTTATTTCATTTGTTCATTATACTGACTTTCATAACAGGGAATTAAATA
ATAAACATCAAGTAGCAACTCAGTATTTGAAATAAATATTATAAGAGAAGTAAACGAAAA
CTGATACACACACAGATAAAGAGAGAGAGAGAAGAAAATAATCAAAGGAATTTAGATCGA
GGTGCAATAACTAATTAAATTTTTGTGGTACTTAAGCAGGTTTGTATTTAATTTGCCAAG
TTAGAAATTAGGTAAACTGATAACATAACATTGATATTATTCAACAAACATAATAATAAC
CATGATAGAAGTAGGGGGGTAATGAAGTTTTCATTCGAATAGTGATCTACACAATTCTAC
AATGATCCGACATCAAGTTTAGAGAGTGGATAAATTGAAAAGATTGAAACCACAAGA

consensusID : consensus_362#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 209
fasta sequence

                              [GGTCTTTTCTTTCTTTGATTCTTATACTGACTTTCTACGGGAATTAAATAATAACATCAGTAGCAACTCGTATTTGAATAAATATTATGAGAGAAGTAAACGTTTAAAGCTGATACACACACAGATAAAGAGAGAGAGAGAAGAAAATAATCAAAGGAATTTAGATCGAGGTGCAATAACTAATTAAATTTTTGTGGTACTTAAGCAGG]

[-] EMBL AA791369             [GGTCTTTTCTTTCTTTGATTCTTATACTGACTTTCTACGGGAATTAAATAATAACATCAGTAGCAACTCGTATTTGAATAAATATTATGAGAGAAGTAAACGTTTAAAGCTGATACACACACAGATAAAGAGAGAGAGAGAAGAAAATAATCAAAGGAATTTAGATCGAGGTGCAATAACTAATTAAATTTTTGTGGTACTTAAGCAGG]




>consensus_362#1
GGTCTTTTCTTTCTTTGATTCTTATACTGACTTTCTACGGGAATTAAATAATAACATCAG
TAGCAACTCGTATTTGAATAAATATTATGAGAGAAGTAAACGTTTAAAGCTGATACACAC
ACAGATAAAGAGAGAGAGAGAAGAAAATAATCAAAGGAATTTAGATCGAGGTGCAATAAC
TAATTAAATTTTTGTGGTACTTAAGCAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_362#0      TTATTGGGTATTTTATTTCATTTGTTCATTATACTGACTTTCATAACAGGGAATTAAATA 60
consensus_362#1      ------GGTCTTTTCTTTC-TTTGATTCTTATACTGACTTTC-TAC--GGGAATTAAATA 50
                           *** **** **** **** *  ************** **   ************

consensus_362#0      ATAAACATCAAGTAGCAACTCAGTATTTGAAATAAATATTATAAGAGAAGTAAACG---A 117
consensus_362#1      ATAA-CATCA-GTAGCAACTC-GTATTTGAA-TAAATATTATGAGAGAAGTAAACGTTTA 106
                     **** ***** ********** ********* ********** *************   *

consensus_362#0      AAACTGATACACACACAGATAAAGAGAGAGAGAGAAGAAAATAATCAAAGGAATTTAGAT 177
consensus_362#1      AAGCTGATACACACACAGATAAAGAGAGAGAGAGAAGAAAATAATCAAAGGAATTTAGAT 166
                     ** *********************************************************

consensus_362#0      CGAGGTGCAATAACTAATTAAATTTTTGTGGTACTTAAGCAGGTTTGTATTTAATTTGCC 237
consensus_362#1      CGAGGTGCAATAACTAATTAAATTTTTGTGGTACTTAAGCAGG----------------- 209
                     *******************************************                 

consensus_362#0      AAGTTAGAAATTAGGTAAACTGATAACATAACATTGATATTATTCAACAAACATAATAAT 297
consensus_362#1      ------------------------------------------------------------
                                                                                 

consensus_362#0      AACCATGATAGAAGTAGGGGGGTAATGAAGTTTTCATTCGAATAGTGATCTACACAATTC 357
consensus_362#1      ------------------------------------------------------------
                                                                                 

consensus_362#0      TACAATGATCCGACATCAAGTTTAGAGAGTGGATAAATTGAAAAGATTGAAACCACAAGA 417
consensus_362#1      ------------------------------------------------------------