cluster # 3623

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Schistosoma mansoni
cluster # 3623 cluster # 3623 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3623#0 length = 399 sequences # 1

consensus_3623#1 length = 370 sequences # 1

consensusID : consensus_3623#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 399
fasta sequence

                              [ATCTGTACCCTGAATGATCGCGTATGACTACACTTGGGACACTTTTCATCTGTCTGAGCAGAAGAACTGTATTCATCTTCAACTGAGAAAACGGCGTCTTCCTCTAAACGTAAACGAACATCCTGTCTTGGCTTATGTTCTAAAACTAGTGGCTGAGTGACAAACCACCTGTAAGAACATATGGGAGCAGAACAGTTCAACGAATAGCAATGAGCCGACTCTTCAATCATTAATAAAGAGTGACAAAGGGGACAAAATAAAACAGGCATTATGCTGGATGCTGAAGCAAAAACAATATCTAGTTAGCAGATAGCCACATACTGTTACATGGAGAGGTTAGAAAATGCTACATAATCCAAACAACACAAACAAACGAGAAAGTAATGTTTATTTTGAATG]

[+] EMBL CD150508             [ATCTGTACCCTGAATGATCGCGTATGACTACACTTGGGACACTTTTCATCTGTCTGAGCAGAAGAACTGTATTCATCTTCAACTGAGAAAACGGCGTCTTCCTCTAAACGTAAACGAACATCCTGTCTTGGCTTATGTTCTAAAACTAGTGGCTGAGTGACAAACCACCTGTAAGAACATATGGGAGCAGAACAGTTCAACGAATAGCAATGAGCCGACTCTTCAATCATTAATAAAGAGTGACAAAGGGGACAAAATAAAACAGGCATTATGCTGGATGCTGAAGCAAAAACAATATCTAGTTAGCAGATAGCCACATACTGTTACATGGAGAGGTTAGAAAATGCTACATAATCCAAACAACACAAACAAACGAGAAAGTAATGTTTATTTTGAATG]




>consensus_3623#0
ATCTGTACCCTGAATGATCGCGTATGACTACACTTGGGACACTTTTCATCTGTCTGAGCA
GAAGAACTGTATTCATCTTCAACTGAGAAAACGGCGTCTTCCTCTAAACGTAAACGAACA
TCCTGTCTTGGCTTATGTTCTAAAACTAGTGGCTGAGTGACAAACCACCTGTAAGAACAT
ATGGGAGCAGAACAGTTCAACGAATAGCAATGAGCCGACTCTTCAATCATTAATAAAGAG
TGACAAAGGGGACAAAATAAAACAGGCATTATGCTGGATGCTGAAGCAAAAACAATATCT
AGTTAGCAGATAGCCACATACTGTTACATGGAGAGGTTAGAAAATGCTACATAATCCAAA
CAACACAAACAAACGAGAAAGTAATGTTTATTTTGAATG

consensusID : consensus_3623#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 370
fasta sequence

                              [TACACTTGGGACACTTNTCATCTGTCTGAACAGAAGNACTGTATTCATCNTCCAACTGAGGAAANGGCGTCTTCCTCTAAACGTANGCGAACATCCTGTGCTTGGCTTATGTTCTAAAACTAGTGGCTGAGTGNCAAACCACCTGTAAGGACATATGGGAGCAGNACAGTTCAGCGNATAGCAATGANCCGACTCTTCAATCATTAATAAAGAGTGACCAAGGGGNCCGAANAAAACAGGCATTATNCTGGATGCTGAANCCAAANCAATATCTAGTTAGCAGATAACCACATACTGTTACATGGAGAGGTTAGAGAATGCTACATAATCCNAACAACACCAACCAACGAGAAAGTAATGTTTATCTCGT]

[-] EMBL SM7291               [TACACTTGGGACACTTNTCATCTGTCTGAACAGAAGNACTGTATTCATCNTCCAACTGAGGAAANGGCGTCTTCCTCTAAACGTANGCGAACATCCTGTGCTTGGCTTATGTTCTAAAACTAGTGGCTGAGTGNCAAACCACCTGTAAGGACATATGGGAGCAGNACAGTTCAGCGNATAGCAATGANCCGACTCTTCAATCATTAATAAAGAGTGACCAAGGGGNCCGAANAAAACAGGCATTATNCTGGATGCTGAANCCAAANCAATATCTAGTTAGCAGATAACCACATACTGTTACATGGAGAGGTTAGAGAATGCTACATAATCCNAACAACACCAACCAACGAGAAAGTAATGTTTATCTCGT]




>consensus_3623#1
TACACTTGGGACACTTNTCATCTGTCTGAACAGAAGNACTGTATTCATCNTCCAACTGAG
GAAANGGCGTCTTCCTCTAAACGTANGCGAACATCCTGTGCTTGGCTTATGTTCTAAAAC
TAGTGGCTGAGTGNCAAACCACCTGTAAGGACATATGGGAGCAGNACAGTTCAGCGNATA
GCAATGANCCGACTCTTCAATCATTAATAAAGAGTGACCAAGGGGNCCGAANAAAACAGG
CATTATNCTGGATGCTGAANCCAAANCAATATCTAGTTAGCAGATAACCACATACTGTTA
CATGGAGAGGTTAGAGAATGCTACATAATCCNAACAACACCAACCAACGAGAAAGTAATG
TTTATCTCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3623#0      ATCTGTACCCTGAATGATCGCGTATGACTACACTTGGGACACTTTTCATCTGTCTGAGCA 60
consensus_3623#1      ----------------------------TACACTTGGGACACTTNTCATCTGTCTGAACA 32
                                                  **************** ************ **

consensus_3623#0      GAAGAACTGTATTCATCTTC-AACTGAGAAAACGGCGTCTTCCTCTAAACGTAAACGAAC 119
consensus_3623#1      GAAGNACTGTATTCATCNTCCAACTGAGGAAANGGCGTCTTCCTCTAAACGTANGCGAAC 92
                      **** ************ ** ******* *** ********************  *****

consensus_3623#0      ATCCTGT-CTTGGCTTATGTTCTAAAACTAGTGGCTGAGTGACAAACCACCTGTAAGAAC 178
consensus_3623#1      ATCCTGTGCTTGGCTTATGTTCTAAAACTAGTGGCTGAGTGNCAAACCACCTGTAAGGAC 152
                      ******* ********************************* *************** **

consensus_3623#0      ATATGGGAGCAGAACAGTTCAACGAATAGCAATGAGCCGACTCTTCAATCATTAATAAAG 238
consensus_3623#1      ATATGGGAGCAGNACAGTTCAGCGNATAGCAATGANCCGACTCTTCAATCATTAATAAAG 212
                      ************ ******** ** ********** ************************

consensus_3623#0      AGTGACAAAGGGGACAAAATAAAACAGGCATTATGCTGGATGCTGAAGCAAAAACAATAT 298
consensus_3623#1      AGTGACCAAGGGGNCCGAANAAAACAGGCATTATNCTGGATGCTGAANCCAAANCAATAT 272
                      ****** ****** *  ** ************** ************ * *** ******

consensus_3623#0      CTAGTTAGCAGATAGCCACATACTGTTACATGGAGAGGTTAGAAAATGCTACATAATCCA 358
consensus_3623#1      CTAGTTAGCAGATAACCACATACTGTTACATGGAGAGGTTAGAGAATGCTACATAATCCN 332
                      ************** **************************** *************** 

consensus_3623#0      AACAACACAAACAAACGAGAAAGTAATGTTTATTTTGAATG 399
consensus_3623#1      AACAACACCAACCAACGAGAAAGTAATGTTTATCTCGT--- 370
                      ******** *** ******************** * *