These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3623#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence [ATCTGTACCCTGAATGATCGCGTATGACTACACTTGGGACACTTTTCATCTGTCTGAGCAGAAGAACTGTATTCATCTTCAACTGAGAAAACGGCGTCTTCCTCTAAACGTAAACGAACATCCTGTCTTGGCTTATGTTCTAAAACTAGTGGCTGAGTGACAAACCACCTGTAAGAACATATGGGAGCAGAACAGTTCAACGAATAGCAATGAGCCGACTCTTCAATCATTAATAAAGAGTGACAAAGGGGACAAAATAAAACAGGCATTATGCTGGATGCTGAAGCAAAAACAATATCTAGTTAGCAGATAGCCACATACTGTTACATGGAGAGGTTAGAAAATGCTACATAATCCAAACAACACAAACAAACGAGAAAGTAATGTTTATTTTGAATG] [+] EMBL CD150508 [ATCTGTACCCTGAATGATCGCGTATGACTACACTTGGGACACTTTTCATCTGTCTGAGCAGAAGAACTGTATTCATCTTCAACTGAGAAAACGGCGTCTTCCTCTAAACGTAAACGAACATCCTGTCTTGGCTTATGTTCTAAAACTAGTGGCTGAGTGACAAACCACCTGTAAGAACATATGGGAGCAGAACAGTTCAACGAATAGCAATGAGCCGACTCTTCAATCATTAATAAAGAGTGACAAAGGGGACAAAATAAAACAGGCATTATGCTGGATGCTGAAGCAAAAACAATATCTAGTTAGCAGATAGCCACATACTGTTACATGGAGAGGTTAGAAAATGCTACATAATCCAAACAACACAAACAAACGAGAAAGTAATGTTTATTTTGAATG] consensusID : consensus_3623#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence [TACACTTGGGACACTTNTCATCTGTCTGAACAGAAGNACTGTATTCATCNTCCAACTGAGGAAANGGCGTCTTCCTCTAAACGTANGCGAACATCCTGTGCTTGGCTTATGTTCTAAAACTAGTGGCTGAGTGNCAAACCACCTGTAAGGACATATGGGAGCAGNACAGTTCAGCGNATAGCAATGANCCGACTCTTCAATCATTAATAAAGAGTGACCAAGGGGNCCGAANAAAACAGGCATTATNCTGGATGCTGAANCCAAANCAATATCTAGTTAGCAGATAACCACATACTGTTACATGGAGAGGTTAGAGAATGCTACATAATCCNAACAACACCAACCAACGAGAAAGTAATGTTTATCTCGT] [-] EMBL SM7291 [TACACTTGGGACACTTNTCATCTGTCTGAACAGAAGNACTGTATTCATCNTCCAACTGAGGAAANGGCGTCTTCCTCTAAACGTANGCGAACATCCTGTGCTTGGCTTATGTTCTAAAACTAGTGGCTGAGTGNCAAACCACCTGTAAGGACATATGGGAGCAGNACAGTTCAGCGNATAGCAATGANCCGACTCTTCAATCATTAATAAAGAGTGACCAAGGGGNCCGAANAAAACAGGCATTATNCTGGATGCTGAANCCAAANCAATATCTAGTTAGCAGATAACCACATACTGTTACATGGAGAGGTTAGAGAATGCTACATAATCCNAACAACACCAACCAACGAGAAAGTAATGTTTATCTCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3623#0 ATCTGTACCCTGAATGATCGCGTATGACTACACTTGGGACACTTTTCATCTGTCTGAGCA 60 consensus_3623#1 ----------------------------TACACTTGGGACACTTNTCATCTGTCTGAACA 32 **************** ************ ** consensus_3623#0 GAAGAACTGTATTCATCTTC-AACTGAGAAAACGGCGTCTTCCTCTAAACGTAAACGAAC 119 consensus_3623#1 GAAGNACTGTATTCATCNTCCAACTGAGGAAANGGCGTCTTCCTCTAAACGTANGCGAAC 92 **** ************ ** ******* *** ******************** ***** consensus_3623#0 ATCCTGT-CTTGGCTTATGTTCTAAAACTAGTGGCTGAGTGACAAACCACCTGTAAGAAC 178 consensus_3623#1 ATCCTGTGCTTGGCTTATGTTCTAAAACTAGTGGCTGAGTGNCAAACCACCTGTAAGGAC 152 ******* ********************************* *************** ** consensus_3623#0 ATATGGGAGCAGAACAGTTCAACGAATAGCAATGAGCCGACTCTTCAATCATTAATAAAG 238 consensus_3623#1 ATATGGGAGCAGNACAGTTCAGCGNATAGCAATGANCCGACTCTTCAATCATTAATAAAG 212 ************ ******** ** ********** ************************ consensus_3623#0 AGTGACAAAGGGGACAAAATAAAACAGGCATTATGCTGGATGCTGAAGCAAAAACAATAT 298 consensus_3623#1 AGTGACCAAGGGGNCCGAANAAAACAGGCATTATNCTGGATGCTGAANCCAAANCAATAT 272 ****** ****** * ** ************** ************ * *** ****** consensus_3623#0 CTAGTTAGCAGATAGCCACATACTGTTACATGGAGAGGTTAGAAAATGCTACATAATCCA 358 consensus_3623#1 CTAGTTAGCAGATAACCACATACTGTTACATGGAGAGGTTAGAGAATGCTACATAATCCN 332 ************** **************************** *************** consensus_3623#0 AACAACACAAACAAACGAGAAAGTAATGTTTATTTTGAATG 399 consensus_3623#1 AACAACACCAACCAACGAGAAAGTAATGTTTATCTCGT--- 370 ******** *** ******************** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||