These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3624#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence [TTTCCTGGTTATGCGGGCAATTCTCGCGATGTCTGCGCCCGTCGAGGACATGGAGGTGACGACAACTGTCACCGCCAGCGCCGAAGACACTGCTAGTCACCCGGAGTATTCCGGGGTTTACGCTGACGAACCGGTCGATTCCCCTGACCCAGACGAGAAGTCCTTCATCGTTGGCACCGATTCGCTGCGAGTCATCATCCGCGACTGCCCATTACGGATGACCTGGCAGCGCCGTGGCTGACGACTGGGTCACCGTCAGCGAAGATCGCCCCACCGGGGCCTAGGCCTATGAAATCGGGACTCACACCGGGCGGGTCGCCCACCACAGAGTCCGCAACATCGACGACCGTTACTACGTGCCTCGGTGAGAAATCGGGCGACCTGGAGCGCACCGGACGTATCTTCGACATGAGGTGCCTGGACGCCCTGGGATATGACGCCGGAAGCAACGACCCCCT] [+] EMBL CD150520 [TTTCCTGGTTATGCGGGCAATTCTCGCGATGTCTGCGCCCGTCGAGGACATGGAGGTGACGACAACTGTCACCGCCAGCGCCGAAGACACTGCTAGTCACCCGGAGTATTCCGGGGTTTACGCTGACGAACCGGTCGATTCCCCTGACCCAGACGAGAAGTCCTTCATCGTTGGCACCGATTCGCTGCGAGTCATCATCCGCGACTGCCCATTACGGATGACCTGGCAGCGCCGTGGCTGACGACTGGGTCACCGTCAGCGAAGATCGCCCCACCGGGGCCTAGGCCTATGAAATCGGGACTCACACCGGGCGGGTCGCCCACCACAGAGTCCGCAACATCGACGACCGTTACTACGTGCCTCGGTGAGAAATCGGGCGACCTGGAGCGCACCGGACGTATCTTCGACATGAGGTGCCTGGACGCCCTGGGATATGACGCCGGAAGCAACGACCCCCT] consensusID : consensus_3624#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence [CCTCCTCGACCATTCCCCTGCCCCGGCATGGGCGGGCAATTCTCGTGATGTCGCGCCCGTCGAGGACATGGAGGTGACGACAACTGTCACCGCCAGCGCCGAAGACACTGCTAGTCACCCGGAGTTTTCCGGGGTTTACGCTGACGAACCGGTCGATTCCCCTGACCCAGACGAGAAGTCCTTCATCGTTGGCACCGATTCGCTGCGAGTCATCATCCGCGACTGCCCATTACGGATGACCTGGCAGCGCCGGGCTGACGACTGGGTCACCGTCAGCGAAGATCGCCCCACCGGGGCCTAGGCCTATGAAATCGGGACTCACACCGGGCGGGTCGCCCACCACAGAGTCCGCAACATCGACGACCGTTACTACGGCCTCGGTGAGAAATCGGGCGACCT] [+] EMBL CD150628 [CCTCCTCGACCATTCCCCTGCCCCGGCATGGGCGGGCAATTCTCGTGATGTCGCGCCCGTCGAGGACATGGAGGTGACGACAACTGTCACCGCCAGCGCCGAAGACACTGCTAGTCACCCGGAGTTTTCCGGGGTTTACGCTGACGAACCGGTCGATTCCCCTGACCCAGACGAGAAGTCCTTCATCGTTGGCACCGATTCGCTGCGAGTCATCATCCGCGACTGCCCATTACGGATGACCTGGCAGCGCCGGGCTGACGACTGGGTCACCGTCAGCGAAGATCGCCCCACCGGGGCCTAGGCCTATGAAATCGGGACTCACACCGGGCGGGTCGCCCACCACAGAGTCCGCAACATCGACGACCGTTACTACGGCCTCGGTGAGAAATCGGGCGACCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3624#0 ------------------TTTCCTGGT-TATGCGGGCAATTCTCGCGATGTCTGCGCCCG 41 consensus_3624#1 CCTCCTCGACCATTCCCCTGCCCCGGCATGGGCGGGCAATTCTCGTGATGTC-GCGCCCG 59 * ** ** * ************** ****** ******* consensus_3624#0 TCGAGGACATGGAGGTGACGACAACTGTCACCGCCAGCGCCGAAGACACTGCTAGTCACC 101 consensus_3624#1 TCGAGGACATGGAGGTGACGACAACTGTCACCGCCAGCGCCGAAGACACTGCTAGTCACC 119 ************************************************************ consensus_3624#0 CGGAGTATTCCGGGGTTTACGCTGACGAACCGGTCGATTCCCCTGACCCAGACGAGAAGT 161 consensus_3624#1 CGGAGTTTTCCGGGGTTTACGCTGACGAACCGGTCGATTCCCCTGACCCAGACGAGAAGT 179 ****** ***************************************************** consensus_3624#0 CCTTCATCGTTGGCACCGATTCGCTGCGAGTCATCATCCGCGACTGCCCATTACGGATGA 221 consensus_3624#1 CCTTCATCGTTGGCACCGATTCGCTGCGAGTCATCATCCGCGACTGCCCATTACGGATGA 239 ************************************************************ consensus_3624#0 CCTGGCAGCGCCGTGGCTGACGACTGGGTCACCGTCAGCGAAGATCGCCCCACCGGGGCC 281 consensus_3624#1 CCTGGCAGCGCCG-GGCTGACGACTGGGTCACCGTCAGCGAAGATCGCCCCACCGGGGCC 298 ************* ********************************************** consensus_3624#0 TAGGCCTATGAAATCGGGACTCACACCGGGCGGGTCGCCCACCACAGAGTCCGCAACATC 341 consensus_3624#1 TAGGCCTATGAAATCGGGACTCACACCGGGCGGGTCGCCCACCACAGAGTCCGCAACATC 358 ************************************************************ consensus_3624#0 GACGACCGTTACTACGTGCCTCGGTGAGAAATCGGGCGACCTGGAGCGCACCGGACGTAT 401 consensus_3624#1 GACGACCGTTACTACG-GCCTCGGTGAGAAATCGGGCGACCT------------------ 399 **************** ************************* consensus_3624#0 CTTCGACATGAGGTGCCTGGACGCCCTGGGATATGACGCCGGAAGCAACGACCCCCT 458 consensus_3624#1 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||