cluster # 3624

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Schistosoma mansoni
cluster # 3624 cluster # 3624 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3624#0 length = 458 sequences # 1

consensus_3624#1 length = 399 sequences # 1

consensusID : consensus_3624#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 458
fasta sequence

                              [TTTCCTGGTTATGCGGGCAATTCTCGCGATGTCTGCGCCCGTCGAGGACATGGAGGTGACGACAACTGTCACCGCCAGCGCCGAAGACACTGCTAGTCACCCGGAGTATTCCGGGGTTTACGCTGACGAACCGGTCGATTCCCCTGACCCAGACGAGAAGTCCTTCATCGTTGGCACCGATTCGCTGCGAGTCATCATCCGCGACTGCCCATTACGGATGACCTGGCAGCGCCGTGGCTGACGACTGGGTCACCGTCAGCGAAGATCGCCCCACCGGGGCCTAGGCCTATGAAATCGGGACTCACACCGGGCGGGTCGCCCACCACAGAGTCCGCAACATCGACGACCGTTACTACGTGCCTCGGTGAGAAATCGGGCGACCTGGAGCGCACCGGACGTATCTTCGACATGAGGTGCCTGGACGCCCTGGGATATGACGCCGGAAGCAACGACCCCCT]

[+] EMBL CD150520             [TTTCCTGGTTATGCGGGCAATTCTCGCGATGTCTGCGCCCGTCGAGGACATGGAGGTGACGACAACTGTCACCGCCAGCGCCGAAGACACTGCTAGTCACCCGGAGTATTCCGGGGTTTACGCTGACGAACCGGTCGATTCCCCTGACCCAGACGAGAAGTCCTTCATCGTTGGCACCGATTCGCTGCGAGTCATCATCCGCGACTGCCCATTACGGATGACCTGGCAGCGCCGTGGCTGACGACTGGGTCACCGTCAGCGAAGATCGCCCCACCGGGGCCTAGGCCTATGAAATCGGGACTCACACCGGGCGGGTCGCCCACCACAGAGTCCGCAACATCGACGACCGTTACTACGTGCCTCGGTGAGAAATCGGGCGACCTGGAGCGCACCGGACGTATCTTCGACATGAGGTGCCTGGACGCCCTGGGATATGACGCCGGAAGCAACGACCCCCT]




>consensus_3624#0
TTTCCTGGTTATGCGGGCAATTCTCGCGATGTCTGCGCCCGTCGAGGACATGGAGGTGAC
GACAACTGTCACCGCCAGCGCCGAAGACACTGCTAGTCACCCGGAGTATTCCGGGGTTTA
CGCTGACGAACCGGTCGATTCCCCTGACCCAGACGAGAAGTCCTTCATCGTTGGCACCGA
TTCGCTGCGAGTCATCATCCGCGACTGCCCATTACGGATGACCTGGCAGCGCCGTGGCTG
ACGACTGGGTCACCGTCAGCGAAGATCGCCCCACCGGGGCCTAGGCCTATGAAATCGGGA
CTCACACCGGGCGGGTCGCCCACCACAGAGTCCGCAACATCGACGACCGTTACTACGTGC
CTCGGTGAGAAATCGGGCGACCTGGAGCGCACCGGACGTATCTTCGACATGAGGTGCCTG
GACGCCCTGGGATATGACGCCGGAAGCAACGACCCCCT

consensusID : consensus_3624#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 399
fasta sequence

                              [CCTCCTCGACCATTCCCCTGCCCCGGCATGGGCGGGCAATTCTCGTGATGTCGCGCCCGTCGAGGACATGGAGGTGACGACAACTGTCACCGCCAGCGCCGAAGACACTGCTAGTCACCCGGAGTTTTCCGGGGTTTACGCTGACGAACCGGTCGATTCCCCTGACCCAGACGAGAAGTCCTTCATCGTTGGCACCGATTCGCTGCGAGTCATCATCCGCGACTGCCCATTACGGATGACCTGGCAGCGCCGGGCTGACGACTGGGTCACCGTCAGCGAAGATCGCCCCACCGGGGCCTAGGCCTATGAAATCGGGACTCACACCGGGCGGGTCGCCCACCACAGAGTCCGCAACATCGACGACCGTTACTACGGCCTCGGTGAGAAATCGGGCGACCT]

[+] EMBL CD150628             [CCTCCTCGACCATTCCCCTGCCCCGGCATGGGCGGGCAATTCTCGTGATGTCGCGCCCGTCGAGGACATGGAGGTGACGACAACTGTCACCGCCAGCGCCGAAGACACTGCTAGTCACCCGGAGTTTTCCGGGGTTTACGCTGACGAACCGGTCGATTCCCCTGACCCAGACGAGAAGTCCTTCATCGTTGGCACCGATTCGCTGCGAGTCATCATCCGCGACTGCCCATTACGGATGACCTGGCAGCGCCGGGCTGACGACTGGGTCACCGTCAGCGAAGATCGCCCCACCGGGGCCTAGGCCTATGAAATCGGGACTCACACCGGGCGGGTCGCCCACCACAGAGTCCGCAACATCGACGACCGTTACTACGGCCTCGGTGAGAAATCGGGCGACCT]




>consensus_3624#1
CCTCCTCGACCATTCCCCTGCCCCGGCATGGGCGGGCAATTCTCGTGATGTCGCGCCCGT
CGAGGACATGGAGGTGACGACAACTGTCACCGCCAGCGCCGAAGACACTGCTAGTCACCC
GGAGTTTTCCGGGGTTTACGCTGACGAACCGGTCGATTCCCCTGACCCAGACGAGAAGTC
CTTCATCGTTGGCACCGATTCGCTGCGAGTCATCATCCGCGACTGCCCATTACGGATGAC
CTGGCAGCGCCGGGCTGACGACTGGGTCACCGTCAGCGAAGATCGCCCCACCGGGGCCTA
GGCCTATGAAATCGGGACTCACACCGGGCGGGTCGCCCACCACAGAGTCCGCAACATCGA
CGACCGTTACTACGGCCTCGGTGAGAAATCGGGCGACCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3624#0      ------------------TTTCCTGGT-TATGCGGGCAATTCTCGCGATGTCTGCGCCCG 41
consensus_3624#1      CCTCCTCGACCATTCCCCTGCCCCGGCATGGGCGGGCAATTCTCGTGATGTC-GCGCCCG 59
                                        *  ** **  *  ************** ****** *******

consensus_3624#0      TCGAGGACATGGAGGTGACGACAACTGTCACCGCCAGCGCCGAAGACACTGCTAGTCACC 101
consensus_3624#1      TCGAGGACATGGAGGTGACGACAACTGTCACCGCCAGCGCCGAAGACACTGCTAGTCACC 119
                      ************************************************************

consensus_3624#0      CGGAGTATTCCGGGGTTTACGCTGACGAACCGGTCGATTCCCCTGACCCAGACGAGAAGT 161
consensus_3624#1      CGGAGTTTTCCGGGGTTTACGCTGACGAACCGGTCGATTCCCCTGACCCAGACGAGAAGT 179
                      ****** *****************************************************

consensus_3624#0      CCTTCATCGTTGGCACCGATTCGCTGCGAGTCATCATCCGCGACTGCCCATTACGGATGA 221
consensus_3624#1      CCTTCATCGTTGGCACCGATTCGCTGCGAGTCATCATCCGCGACTGCCCATTACGGATGA 239
                      ************************************************************

consensus_3624#0      CCTGGCAGCGCCGTGGCTGACGACTGGGTCACCGTCAGCGAAGATCGCCCCACCGGGGCC 281
consensus_3624#1      CCTGGCAGCGCCG-GGCTGACGACTGGGTCACCGTCAGCGAAGATCGCCCCACCGGGGCC 298
                      ************* **********************************************

consensus_3624#0      TAGGCCTATGAAATCGGGACTCACACCGGGCGGGTCGCCCACCACAGAGTCCGCAACATC 341
consensus_3624#1      TAGGCCTATGAAATCGGGACTCACACCGGGCGGGTCGCCCACCACAGAGTCCGCAACATC 358
                      ************************************************************

consensus_3624#0      GACGACCGTTACTACGTGCCTCGGTGAGAAATCGGGCGACCTGGAGCGCACCGGACGTAT 401
consensus_3624#1      GACGACCGTTACTACG-GCCTCGGTGAGAAATCGGGCGACCT------------------ 399
                      **************** *************************                  

consensus_3624#0      CTTCGACATGAGGTGCCTGGACGCCCTGGGATATGACGCCGGAAGCAACGACCCCCT 458
consensus_3624#1      ---------------------------------------------------------