These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3628#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence [TTGGTTTGGTTTGTTTGGTGATTAGATACGACTTAATTTATTTTCCTTTCTTTCTTTCCTTTTTTTCTTTTTTGTTTTTTTGAGACAAGGTTTCTCTACAGCTATGGAGCTAGTACAGGAACTCTCTCTGTAGACCAGGTTGGCTTTGAACTCACAGAGATCTGCCTGCTTCTGCCTCCCGAGTGCTGGGATTAAAGGTATGAGCCATCGCTATCCAGATGTGAGTTGAATTTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACCAAAGTCAGAGGATGACCTCAGATACTGTCTTTTGAAACAGGGTCTGCCATTGACTTGAGCTTGCTGACTAGGGTCACTGGCTGACCAGGAAGCCCCAGAAATCCCCCTGTGTCTTCCTCCCCAGCCTTGGGATTACAA] [+] EMBL CD169617 [TTGGTTTGGTTTGTTTGGTGATTAGATACGACTTAATTTATTTTCCTTTCTTTCTTTCCTTTTTTTCTTTTTTGTTTTTTTGAGACAAGGTTTCTCTACAGCTATGGAGCTAGTACAGGAACTCTCTCTGTAGACCAGGTTGGCTTTGAACTCACAGAGATCTGCCTGCTTCTGCCTCCCGAGTGCTGGGATTAAAGGTATGAGCCATCGCTATCCAGATGTGAGTTGAATTTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACCAAAGTCAGAGGATGACCTCAGATACTGTCTTTTGAAACAGGGTCTGCCATTGACTTGAGCTTGCTGACTAGGGTCACTGGCTGACCAGGAAGCCCCAGAAATCCCCCTGTGTCTTCCTCCCCAGCCTTGGGATTACAA] consensusID : consensus_3628#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [TNANGCAGTTTTGAGAATTACAGGTTAGAGGGTCAGANAGGAAGCCAAATAAAATGACTTGCTTCTGAACCCATTTTAGGAGATCAGAGAGCAGTTCTCCTCGACGTGAGAGGAAGAAGAGCTCAAAGAAGAAGAAACACAGGTATGAGGTGGAAAAGGTTTTTNTTTTGTTTTGTTTTTCGAGACAGGATTTCTTTGTGGCTTTAGAGGCTGTCCTGGAACAGTTCTTATAGACCAGGCTGGTTTCAAACTCACAGAGATCTGCCTGCCTCTGCCTCCCGAGTGCTGGAATTAAAGGCGTGTGCCCCACCACGACCCGGCTA] [+] EMBL SMAA40627 [TNANGCAGTTTTGAGAATTACAGGTTAGAGGGTCAGANAGGAAGCCAAATAAAATGACTTGCTTCTGAACCCATTTTAGGAGATCAGAGAGCAGTTCTCCTCGACGTGAGAGGAAGAAGAGCTCAAAGAAGAAGAAACACAGGTATGAGGTGGAAAAGGTTTTTNTTTTGTTTTGTTTTTCGAGACAGGATTTCTTTGTGGCTTTAGAGGCTGTCCTGGAACAGTTCTTATAGACCAGGCTGGTTTCAAACTCACAGAGATCTGCCTGCCTCTGCCTCCCGAGTGCTGGAATTAAAGGCGTGTGCCCCACCACGACCCGGCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3628#0 TTGGTTTGGTTTGTTTGGTGATTAGATACGACTTAATTTATTTTCCTTTCTTTCTTTCCT 60 consensus_3628#1 ------------------------------------------------------------ consensus_3628#0 TTTTTTCTTTTTTGTTTTTTTGAGACAAGGTTTCTCTACAGCTATGGAGCTAGTACAGGA 120 consensus_3628#1 ---------TNANGCAGTTTTGAGAA---------TTACAGGTTAGAGGGTCAGANAGGA 42 * * ******** ***** * * * * * **** consensus_3628#0 ACTCTCTCTGTAGACCAGGTTGGCTTTGAACTCAC----AGAGATCTGCCTGCTTCTGCC 176 consensus_3628#1 AGCCA---AATAAAATGACTTGCTTCTGAACCCATTTTAGGAGATCAGAGAGCAGTTCTC 99 * * ** * *** * ***** ** ****** * ** * * consensus_3628#0 TCCCGAGTGCTGGGATTAAAGGTATGAGCCATCGCTATC-CAGATGTGAGTTGAATTTCG 235 consensus_3628#1 CTCGACGTGAGAGGAAGAAGAGCTCAAAGAAGAAGAAACACAGGTATGAGGTGGAAAAGG 159 * *** *** ** * * * * * *** * **** ** * * consensus_3628#0 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACCAAAGTCAG 295 consensus_3628#1 TTTTTNTTT---TGTTTTGTTTTTCGAGACAGGATTTCTTTGTGGCT---------TTAG 207 * * * * * *** * * * * * * * * * **** * * ** consensus_3628#0 AGGATGACCTCAGATACTGTCTTTTGAAACAGGGTCTGCCATTGACTTGAGCTTGCTGAC 355 consensus_3628#1 AGGCTGTCCTGGAACAGT-TCTTATAGACCAGG--CTG-----GTTTCAAACTCACAGAG 259 *** ** *** * * * **** * * **** *** * * * ** * ** consensus_3628#0 TAGGGTCACTGGCTGACCAGGAAGCCCCAGAAATCCCCCTGTGTCTTCCTCCCCAGCCTT 415 consensus_3628#1 ATCTGCCTGCCTCTGCCTCCCGAGTGCTGGAATTAAAGGCGTGTGCCCCACCACGACCCG 319 * * *** * ** * *** * **** ** ** * ** consensus_3628#0 GGGATTACAA 425 consensus_3628#1 GCTA------ 323 * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||