cluster # 3628

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Schistosoma mansoni
cluster # 3628 cluster # 3628 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3628#0 length = 425 sequences # 1

consensus_3628#1 length = 323 sequences # 1

consensusID : consensus_3628#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 425
fasta sequence

                              [TTGGTTTGGTTTGTTTGGTGATTAGATACGACTTAATTTATTTTCCTTTCTTTCTTTCCTTTTTTTCTTTTTTGTTTTTTTGAGACAAGGTTTCTCTACAGCTATGGAGCTAGTACAGGAACTCTCTCTGTAGACCAGGTTGGCTTTGAACTCACAGAGATCTGCCTGCTTCTGCCTCCCGAGTGCTGGGATTAAAGGTATGAGCCATCGCTATCCAGATGTGAGTTGAATTTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACCAAAGTCAGAGGATGACCTCAGATACTGTCTTTTGAAACAGGGTCTGCCATTGACTTGAGCTTGCTGACTAGGGTCACTGGCTGACCAGGAAGCCCCAGAAATCCCCCTGTGTCTTCCTCCCCAGCCTTGGGATTACAA]

[+] EMBL CD169617             [TTGGTTTGGTTTGTTTGGTGATTAGATACGACTTAATTTATTTTCCTTTCTTTCTTTCCTTTTTTTCTTTTTTGTTTTTTTGAGACAAGGTTTCTCTACAGCTATGGAGCTAGTACAGGAACTCTCTCTGTAGACCAGGTTGGCTTTGAACTCACAGAGATCTGCCTGCTTCTGCCTCCCGAGTGCTGGGATTAAAGGTATGAGCCATCGCTATCCAGATGTGAGTTGAATTTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACCAAAGTCAGAGGATGACCTCAGATACTGTCTTTTGAAACAGGGTCTGCCATTGACTTGAGCTTGCTGACTAGGGTCACTGGCTGACCAGGAAGCCCCAGAAATCCCCCTGTGTCTTCCTCCCCAGCCTTGGGATTACAA]




>consensus_3628#0
TTGGTTTGGTTTGTTTGGTGATTAGATACGACTTAATTTATTTTCCTTTCTTTCTTTCCT
TTTTTTCTTTTTTGTTTTTTTGAGACAAGGTTTCTCTACAGCTATGGAGCTAGTACAGGA
ACTCTCTCTGTAGACCAGGTTGGCTTTGAACTCACAGAGATCTGCCTGCTTCTGCCTCCC
GAGTGCTGGGATTAAAGGTATGAGCCATCGCTATCCAGATGTGAGTTGAATTTCGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACCAAAGTCAGAGGAT
GACCTCAGATACTGTCTTTTGAAACAGGGTCTGCCATTGACTTGAGCTTGCTGACTAGGG
TCACTGGCTGACCAGGAAGCCCCAGAAATCCCCCTGTGTCTTCCTCCCCAGCCTTGGGAT
TACAA

consensusID : consensus_3628#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence

                              [TNANGCAGTTTTGAGAATTACAGGTTAGAGGGTCAGANAGGAAGCCAAATAAAATGACTTGCTTCTGAACCCATTTTAGGAGATCAGAGAGCAGTTCTCCTCGACGTGAGAGGAAGAAGAGCTCAAAGAAGAAGAAACACAGGTATGAGGTGGAAAAGGTTTTTNTTTTGTTTTGTTTTTCGAGACAGGATTTCTTTGTGGCTTTAGAGGCTGTCCTGGAACAGTTCTTATAGACCAGGCTGGTTTCAAACTCACAGAGATCTGCCTGCCTCTGCCTCCCGAGTGCTGGAATTAAAGGCGTGTGCCCCACCACGACCCGGCTA]

[+] EMBL SMAA40627            [TNANGCAGTTTTGAGAATTACAGGTTAGAGGGTCAGANAGGAAGCCAAATAAAATGACTTGCTTCTGAACCCATTTTAGGAGATCAGAGAGCAGTTCTCCTCGACGTGAGAGGAAGAAGAGCTCAAAGAAGAAGAAACACAGGTATGAGGTGGAAAAGGTTTTTNTTTTGTTTTGTTTTTCGAGACAGGATTTCTTTGTGGCTTTAGAGGCTGTCCTGGAACAGTTCTTATAGACCAGGCTGGTTTCAAACTCACAGAGATCTGCCTGCCTCTGCCTCCCGAGTGCTGGAATTAAAGGCGTGTGCCCCACCACGACCCGGCTA]




>consensus_3628#1
TNANGCAGTTTTGAGAATTACAGGTTAGAGGGTCAGANAGGAAGCCAAATAAAATGACTT
GCTTCTGAACCCATTTTAGGAGATCAGAGAGCAGTTCTCCTCGACGTGAGAGGAAGAAGA
GCTCAAAGAAGAAGAAACACAGGTATGAGGTGGAAAAGGTTTTTNTTTTGTTTTGTTTTT
CGAGACAGGATTTCTTTGTGGCTTTAGAGGCTGTCCTGGAACAGTTCTTATAGACCAGGC
TGGTTTCAAACTCACAGAGATCTGCCTGCCTCTGCCTCCCGAGTGCTGGAATTAAAGGCG
TGTGCCCCACCACGACCCGGCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3628#0      TTGGTTTGGTTTGTTTGGTGATTAGATACGACTTAATTTATTTTCCTTTCTTTCTTTCCT 60
consensus_3628#1      ------------------------------------------------------------
                                                                                  

consensus_3628#0      TTTTTTCTTTTTTGTTTTTTTGAGACAAGGTTTCTCTACAGCTATGGAGCTAGTACAGGA 120
consensus_3628#1      ---------TNANGCAGTTTTGAGAA---------TTACAGGTTAGAGGGTCAGANAGGA 42
                               *   *   ********           ***** *  *  * *   * ****

consensus_3628#0      ACTCTCTCTGTAGACCAGGTTGGCTTTGAACTCAC----AGAGATCTGCCTGCTTCTGCC 176
consensus_3628#1      AGCCA---AATAAAATGACTTGCTTCTGAACCCATTTTAGGAGATCAGAGAGCAGTTCTC 99
                      *  *      ** *     ***  * ***** **      ****** *   **   *  *

consensus_3628#0      TCCCGAGTGCTGGGATTAAAGGTATGAGCCATCGCTATC-CAGATGTGAGTTGAATTTCG 235
consensus_3628#1      CTCGACGTGAGAGGAAGAAGAGCTCAAAGAAGAAGAAACACAGGTATGAGGTGGAAAAGG 159
                        *   ***   ***  **  *    *   *     * * *** * **** ** *    *

consensus_3628#0      TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACCAAAGTCAG 295
consensus_3628#1      TTTTTNTTT---TGTTTTGTTTTTCGAGACAGGATTTCTTTGTGGCT---------TTAG 207
                      * * * * *   *** *   * *  * *   *  * * * ****  *         * **

consensus_3628#0      AGGATGACCTCAGATACTGTCTTTTGAAACAGGGTCTGCCATTGACTTGAGCTTGCTGAC 355
consensus_3628#1      AGGCTGTCCTGGAACAGT-TCTTATAGACCAGG--CTG-----GTTTCAAACTCACAGAG 259
                      *** ** ***   * * * **** *  * ****  ***     *  *  * **  * ** 

consensus_3628#0      TAGGGTCACTGGCTGACCAGGAAGCCCCAGAAATCCCCCTGTGTCTTCCTCCCCAGCCTT 415
consensus_3628#1      ATCTGCCTGCCTCTGCCTCCCGAGTGCTGGAATTAAAGGCGTGTGCCCCACCACGACCCG 319
                          * *     *** *     **  *  *** *      ****   ** ** *  **  

consensus_3628#0      GGGATTACAA 425
consensus_3628#1      GCTA------ 323
                      *  *