These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3637#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence [CCTCCACATCAACCAACCCGGTTAAAGCGCCCCCTTTACAATGTAAGTTAGAGTTACCTCTACCGCCCCTTGTTTCGCGCGCTTTTGTCTTCAGGTTATGACCCCTAAGTTGTGGCGCTTTTTCGCACATACAGTGATACATCCCCTTCGGGGACGTAACCCATATATGCGACGATGTGCTCTGGCTAGAGACTTTGAGGCCACTACCATCTAATGTGCCATATAAGCGCGTTTTCCACATTCCGTATACGTCATCAGATGTGTTTATCGTCCTCCCGCCATGAGACACACCGCCAAAAGAATTGCCCTCGATAGATTTGTAGGCCGCCGATTTTCGGACGGCTTCCAACATTTCGCAACTACGTGTGCTAAACGAAGCAATTCGGCATGATCGACGAAGAATTGCCAACGGAAAGAGAGGTTCCACCCCGATTCCCCGAGAGCTTTTATGAGGTTAATGTACTTCTTTGGTACTCCT] [+] EMBL CD118303 [CCTCCACATCAACCAACCCGGTTAAAGCGCCCCCTTTACAATGTAAGTTAGAGTTACCTCTACCGCCCCTTGTTTCGCGCGCTTTTGTCTTCAGGTTATGACCCCTAAGTTGTGGCGCTTTTTCGCACATACAGTGATACATCCCCTTCGGGGACGTAACCCATATATGCGACGATGTGCTCTGGCTAGAGACTTTGAGGCCACTACCATCTAATGTGCCATATAAGCGCGTTTTCCACATTCCGTATACGTCATCAGATGTGTTTATCGTCCTCCCGCCATGAGACACACCGCCAAAAGAATTGCCCTCGATAGATTTGTAGGCCGCCGATTTTCGGACGGCTTCCAACATTTCGCAACTACGTGTGCTAAACGAAGCAATTCGGCATGATCGACGAAGAATTGCCAACGGAAAGAGAGGTTCCACCCCGATTCCCCGAGAGCTTTTATGAGGTTAATGTACTTCTTTGGTACTCCT] consensusID : consensus_3637#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [TCTGACTCAAGAAAGACACTAATTATCATCTTCGTAGATCTAACAAAAGCCTTCGATACTTTACCAAAGCAACTAATACAGAATGCTCTATTAAAAACATGCCGATCCCGAAACATAAACTTGTGCATGAATAAACTACTAGACAATCCAAAAGGCTTTCCTTCGGGGACGTAACCCATATATGCGACGATGTGCTCTGGCTGGAGACTTTGAGGTCACTACCATCTAATGTGCCATATAGGCGCGTTTTCCACATTCCGTATACGTCATCAGATGTGTTTATCGTCCTCCCGCCATGAGACACACCGCCTAAGGACTTGCCC] [-] EMBL CD195941 [TCTGACTCAAGAAAGACACTAATTATCATCTTCGTAGATCTAACAAAAGCCTTCGATACTTTACCAAAGCAACTAATACAGAATGCTCTATTAAAAACATGCCGATCCCGAAACATAAACTTGTGCATGAATAAACTACTAGACAATCCAAAAGGCTTTCCTTCGGGGACGTAACCCATATATGCGACGATGTGCTCTGGCTGGAGACTTTGAGGTCACTACCATCTAATGTGCCATATAGGCGCGTTTTCCACATTCCGTATACGTCATCAGATGTGTTTATCGTCCTCCCGCCATGAGACACACCGCCTAAGGACTTGCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3637#0 -CCTCCACATCAACCAACCCGGTTAA-AGCGCCCCCTTTACAATGTAAGTTAGAGTTACC 58 consensus_3637#1 TCTGACTCAAGAAAGACACTAATTATCATCTTCGTAGATCTAACAAAAGCCTTCGATACT 60 * * ** ** * * *** * * * * ** *** * *** consensus_3637#0 T--CTACCGCCCCTTGTTTCGCGCGCTTTTGTCTTCAGGTTATGACCCCTAAGTTGTGGC 116 consensus_3637#1 TTACCAAAGCAACTAATACAGAATGCTCTATTAAAAACATGCCGATCCCGAAACATAAAC 120 * * * ** ** * * *** * * * * ** *** ** * consensus_3637#0 GCTTTTTCGCACATACAGTGATACA-----------TCCCCTTCGGGGACGTAACCCATA 165 consensus_3637#1 TTGTGCATGAATAAACTACTAGACAATCCAAAAGGCTTTCCTTCGGGGACGTAACCCATA 180 * * * * ** * *** * ********************* consensus_3637#0 TATGCGACGATGTGCTCTGGCTAGAGACTTTGAGGCCACTACCATCTAATGTGCCATATA 225 consensus_3637#1 TATGCGACGATGTGCTCTGGCTGGAGACTTTGAGGTCACTACCATCTAATGTGCCATATA 240 ********************** ************ ************************ consensus_3637#0 AGCGCGTTTTCCACATTCCGTATACGTCATCAGATGTGTTTATCGTCCTCCCGCCATGAG 285 consensus_3637#1 GGCGCGTTTTCCACATTCCGTATACGTCATCAGATGTGTTTATCGTCCTCCCGCCATGAG 300 *********************************************************** consensus_3637#0 ACACACCGCCAAAAGAATTGCCCTCGATAGATTTGTAGGCCGCCGATTTTCGGACGGCTT 345 consensus_3637#1 ACACACCGCCTAAGGACTTGCCC------------------------------------- 323 ********** ** ** ****** consensus_3637#0 CCAACATTTCGCAACTACGTGTGCTAAACGAAGCAATTCGGCATGATCGACGAAGAATTG 405 consensus_3637#1 ------------------------------------------------------------ consensus_3637#0 CCAACGGAAAGAGAGGTTCCACCCCGATTCCCCGAGAGCTTTTATGAGGTTAATGTACTT 465 consensus_3637#1 ------------------------------------------------------------ consensus_3637#0 CTTTGGTACTCCT 478 consensus_3637#1 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||