cluster # 3637

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Schistosoma mansoni
cluster # 3637 cluster # 3637 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3637#0 length = 478 sequences # 1

consensus_3637#1 length = 323 sequences # 1

consensusID : consensus_3637#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 478
fasta sequence

                              [CCTCCACATCAACCAACCCGGTTAAAGCGCCCCCTTTACAATGTAAGTTAGAGTTACCTCTACCGCCCCTTGTTTCGCGCGCTTTTGTCTTCAGGTTATGACCCCTAAGTTGTGGCGCTTTTTCGCACATACAGTGATACATCCCCTTCGGGGACGTAACCCATATATGCGACGATGTGCTCTGGCTAGAGACTTTGAGGCCACTACCATCTAATGTGCCATATAAGCGCGTTTTCCACATTCCGTATACGTCATCAGATGTGTTTATCGTCCTCCCGCCATGAGACACACCGCCAAAAGAATTGCCCTCGATAGATTTGTAGGCCGCCGATTTTCGGACGGCTTCCAACATTTCGCAACTACGTGTGCTAAACGAAGCAATTCGGCATGATCGACGAAGAATTGCCAACGGAAAGAGAGGTTCCACCCCGATTCCCCGAGAGCTTTTATGAGGTTAATGTACTTCTTTGGTACTCCT]

[+] EMBL CD118303             [CCTCCACATCAACCAACCCGGTTAAAGCGCCCCCTTTACAATGTAAGTTAGAGTTACCTCTACCGCCCCTTGTTTCGCGCGCTTTTGTCTTCAGGTTATGACCCCTAAGTTGTGGCGCTTTTTCGCACATACAGTGATACATCCCCTTCGGGGACGTAACCCATATATGCGACGATGTGCTCTGGCTAGAGACTTTGAGGCCACTACCATCTAATGTGCCATATAAGCGCGTTTTCCACATTCCGTATACGTCATCAGATGTGTTTATCGTCCTCCCGCCATGAGACACACCGCCAAAAGAATTGCCCTCGATAGATTTGTAGGCCGCCGATTTTCGGACGGCTTCCAACATTTCGCAACTACGTGTGCTAAACGAAGCAATTCGGCATGATCGACGAAGAATTGCCAACGGAAAGAGAGGTTCCACCCCGATTCCCCGAGAGCTTTTATGAGGTTAATGTACTTCTTTGGTACTCCT]




>consensus_3637#0
CCTCCACATCAACCAACCCGGTTAAAGCGCCCCCTTTACAATGTAAGTTAGAGTTACCTC
TACCGCCCCTTGTTTCGCGCGCTTTTGTCTTCAGGTTATGACCCCTAAGTTGTGGCGCTT
TTTCGCACATACAGTGATACATCCCCTTCGGGGACGTAACCCATATATGCGACGATGTGC
TCTGGCTAGAGACTTTGAGGCCACTACCATCTAATGTGCCATATAAGCGCGTTTTCCACA
TTCCGTATACGTCATCAGATGTGTTTATCGTCCTCCCGCCATGAGACACACCGCCAAAAG
AATTGCCCTCGATAGATTTGTAGGCCGCCGATTTTCGGACGGCTTCCAACATTTCGCAAC
TACGTGTGCTAAACGAAGCAATTCGGCATGATCGACGAAGAATTGCCAACGGAAAGAGAG
GTTCCACCCCGATTCCCCGAGAGCTTTTATGAGGTTAATGTACTTCTTTGGTACTCCT

consensusID : consensus_3637#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence

                              [TCTGACTCAAGAAAGACACTAATTATCATCTTCGTAGATCTAACAAAAGCCTTCGATACTTTACCAAAGCAACTAATACAGAATGCTCTATTAAAAACATGCCGATCCCGAAACATAAACTTGTGCATGAATAAACTACTAGACAATCCAAAAGGCTTTCCTTCGGGGACGTAACCCATATATGCGACGATGTGCTCTGGCTGGAGACTTTGAGGTCACTACCATCTAATGTGCCATATAGGCGCGTTTTCCACATTCCGTATACGTCATCAGATGTGTTTATCGTCCTCCCGCCATGAGACACACCGCCTAAGGACTTGCCC]

[-] EMBL CD195941             [TCTGACTCAAGAAAGACACTAATTATCATCTTCGTAGATCTAACAAAAGCCTTCGATACTTTACCAAAGCAACTAATACAGAATGCTCTATTAAAAACATGCCGATCCCGAAACATAAACTTGTGCATGAATAAACTACTAGACAATCCAAAAGGCTTTCCTTCGGGGACGTAACCCATATATGCGACGATGTGCTCTGGCTGGAGACTTTGAGGTCACTACCATCTAATGTGCCATATAGGCGCGTTTTCCACATTCCGTATACGTCATCAGATGTGTTTATCGTCCTCCCGCCATGAGACACACCGCCTAAGGACTTGCCC]




>consensus_3637#1
TCTGACTCAAGAAAGACACTAATTATCATCTTCGTAGATCTAACAAAAGCCTTCGATACT
TTACCAAAGCAACTAATACAGAATGCTCTATTAAAAACATGCCGATCCCGAAACATAAAC
TTGTGCATGAATAAACTACTAGACAATCCAAAAGGCTTTCCTTCGGGGACGTAACCCATA
TATGCGACGATGTGCTCTGGCTGGAGACTTTGAGGTCACTACCATCTAATGTGCCATATA
GGCGCGTTTTCCACATTCCGTATACGTCATCAGATGTGTTTATCGTCCTCCCGCCATGAG
ACACACCGCCTAAGGACTTGCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3637#0      -CCTCCACATCAACCAACCCGGTTAA-AGCGCCCCCTTTACAATGTAAGTTAGAGTTACC 58
consensus_3637#1      TCTGACTCAAGAAAGACACTAATTATCATCTTCGTAGATCTAACAAAAGCCTTCGATACT 60
                       *   * **  **  *  *   ***  * *  *     *  **   ***     * *** 

consensus_3637#0      T--CTACCGCCCCTTGTTTCGCGCGCTTTTGTCTTCAGGTTATGACCCCTAAGTTGTGGC 116
consensus_3637#1      TTACCAAAGCAACTAATACAGAATGCTCTATTAAAAACATGCCGATCCCGAAACATAAAC 120
                      *  * *  **  **  *   *   *** *  *    *  *   ** *** **       *

consensus_3637#0      GCTTTTTCGCACATACAGTGATACA-----------TCCCCTTCGGGGACGTAACCCATA 165
consensus_3637#1      TTGTGCATGAATAAACTACTAGACAATCCAAAAGGCTTTCCTTCGGGGACGTAACCCATA 180
                         *    * * * **    * ***           *  *********************

consensus_3637#0      TATGCGACGATGTGCTCTGGCTAGAGACTTTGAGGCCACTACCATCTAATGTGCCATATA 225
consensus_3637#1      TATGCGACGATGTGCTCTGGCTGGAGACTTTGAGGTCACTACCATCTAATGTGCCATATA 240
                      ********************** ************ ************************

consensus_3637#0      AGCGCGTTTTCCACATTCCGTATACGTCATCAGATGTGTTTATCGTCCTCCCGCCATGAG 285
consensus_3637#1      GGCGCGTTTTCCACATTCCGTATACGTCATCAGATGTGTTTATCGTCCTCCCGCCATGAG 300
                       ***********************************************************

consensus_3637#0      ACACACCGCCAAAAGAATTGCCCTCGATAGATTTGTAGGCCGCCGATTTTCGGACGGCTT 345
consensus_3637#1      ACACACCGCCTAAGGACTTGCCC------------------------------------- 323
                      ********** ** ** ******                                     

consensus_3637#0      CCAACATTTCGCAACTACGTGTGCTAAACGAAGCAATTCGGCATGATCGACGAAGAATTG 405
consensus_3637#1      ------------------------------------------------------------
                                                                                  

consensus_3637#0      CCAACGGAAAGAGAGGTTCCACCCCGATTCCCCGAGAGCTTTTATGAGGTTAATGTACTT 465
consensus_3637#1      ------------------------------------------------------------
                                                                                  

consensus_3637#0      CTTTGGTACTCCT 478
consensus_3637#1      -------------