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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 3642 cluster # 3642       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3642#0 length = 611 sequences # 1  
consensus_3642#1 length = 369 sequences # 1  

consensusID : consensus_3642#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 611
fasta sequence
                              [GACCGACGTTTGGTTTGGATTCATAATCACATGCTGAAAAAATGCGTGGCGAATCTGGAACTACACATGGAACTGCTGTGCATTCGTCAGCAGACTCTGTGGATATCTCAGACTTCATTCTCTTCGGACATGATTCTTCAACAAAACTATCAGCTTGATTGCTGAACTCTGCATTAACGGGATTAGAGGTTTCAGCACATAAACGTTTTTTAACCATCGGTTTTTTCCTCTTGAAAACCTTCGGAATTTTTTTCTTTCCGATCTTAAGCTCCGATGGACCACCTTCACTACTTAGATTGTCACAAGTATTGGGAACGATATTTGTCGTCTATGAAGGGTAAACATAGTGGAACATTCTTTTACCTCAGGTGACGATTCTGTACATAGCGTGGGAACCTGTTCATCGGTCGCCACTGATGTAGCTTCTCTATTTGCCAGAGTTCTTTTTAAATTTGTGTCGACTCGTTTTAACGCGTTTCTGTAGGAGGAATCTTTGCTTAAAATATTCTCAAGACATTTCATAATACCATCCAAACAACATNTGTGGACGTCTTCGAATAAGTTNTGTTATCCGAGTAATCAGGGACAGGACACTGTGAGCGTAAATGTTG]

[+] EMBL CD155801             [GACCGACGTTTGGTTTGGATTCATAATCACATGCTGAAAAAATGCGTGGCGAATCTGGAACTACACATGGAACTGCTGTGCATTCGTCAGCAGACTCTGTGGATATCTCAGACTTCATTCTCTTCGGACATGATTCTTCAACAAAACTATCAGCTTGATTGCTGAACTCTGCATTAACGGGATTAGAGGTTTCAGCACATAAACGTTTTTTAACCATCGGTTTTTTCCTCTTGAAAACCTTCGGAATTTTTTTCTTTCCGATCTTAAGCTCCGATGGACCACCTTCACTACTTAGATTGTCACAAGTATTGGGAACGATATTTGTCGTCTATGAAGGGTAAACATAGTGGAACATTCTTTTACCTCAGGTGACGATTCTGTACATAGCGTGGGAACCTGTTCATCGGTCGCCACTGATGTAGCTTCTCTATTTGCCAGAGTTCTTTTTAAATTTGTGTCGACTCGTTTTAACGCGTTTCTGTAGGAGGAATCTTTGCTTAAAATATTCTCAAGACATTTCATAATACCATCCAAACAACATNTGTGGACGTCTTCGAATAAGTTNTGTTATCCGAGTAATCAGGGACAGGACACTGTGAGCGTAAATGTTG]


>consensus_3642#0 GACCGACGTTTGGTTTGGATTCATAATCACATGCTGAAAAAATGCGTGGCGAATCTGGAA CTACACATGGAACTGCTGTGCATTCGTCAGCAGACTCTGTGGATATCTCAGACTTCATTC TCTTCGGACATGATTCTTCAACAAAACTATCAGCTTGATTGCTGAACTCTGCATTAACGG GATTAGAGGTTTCAGCACATAAACGTTTTTTAACCATCGGTTTTTTCCTCTTGAAAACCT TCGGAATTTTTTTCTTTCCGATCTTAAGCTCCGATGGACCACCTTCACTACTTAGATTGT CACAAGTATTGGGAACGATATTTGTCGTCTATGAAGGGTAAACATAGTGGAACATTCTTT TACCTCAGGTGACGATTCTGTACATAGCGTGGGAACCTGTTCATCGGTCGCCACTGATGT AGCTTCTCTATTTGCCAGAGTTCTTTTTAAATTTGTGTCGACTCGTTTTAACGCGTTTCT GTAGGAGGAATCTTTGCTTAAAATATTCTCAAGACATTTCATAATACCATCCAAACAACA TNTGTGGACGTCTTCGAATAAGTTNTGTTATCCGAGTAATCAGGGACAGGACACTGTGAG CGTAAATGTTG



consensusID : consensus_3642#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 369
fasta sequence
                              [CCGACGTTTGGTTTGGATTCATAATCACATGCTGAAAAAATGCGTGGCGAATCTGGAACTACACATGGAACTGCTGTGCATTCGTCAGCAGACTCTGTGGATATCTCAGACTTCATTCTCTTCGGACATGATTCTTCAACAAAACTATCAGCTTGATTGCTGAACTCTGCATTAACGGGATTAGAGGTTTCAGCACATAAACGTTTTTTAACCATCGGTTTTTTCCTCTTGAAAACCTTCGGAATTTTTTTCTTTCCGATCTTAAGCTCCGATGGACCACCTTCACTACTTAGATTGTCACAAGTATTGGGAACGATATTTGTCGTCTCAGGTGACGATTCTGTACATAGCGTGGGAACCTGTTCATCG]

[-] EMBL CD134885             [CCGACGTTTGGTTTGGATTCATAATCACATGCTGAAAAAATGCGTGGCGAATCTGGAACTACACATGGAACTGCTGTGCATTCGTCAGCAGACTCTGTGGATATCTCAGACTTCATTCTCTTCGGACATGATTCTTCAACAAAACTATCAGCTTGATTGCTGAACTCTGCATTAACGGGATTAGAGGTTTCAGCACATAAACGTTTTTTAACCATCGGTTTTTTCCTCTTGAAAACCTTCGGAATTTTTTTCTTTCCGATCTTAAGCTCCGATGGACCACCTTCACTACTTAGATTGTCACAAGTATTGGGAACGATATTTGTCGTCTCAGGTGACGATTCTGTACATAGCGTGGGAACCTGTTCATCG]


>consensus_3642#1 CCGACGTTTGGTTTGGATTCATAATCACATGCTGAAAAAATGCGTGGCGAATCTGGAACT ACACATGGAACTGCTGTGCATTCGTCAGCAGACTCTGTGGATATCTCAGACTTCATTCTC TTCGGACATGATTCTTCAACAAAACTATCAGCTTGATTGCTGAACTCTGCATTAACGGGA TTAGAGGTTTCAGCACATAAACGTTTTTTAACCATCGGTTTTTTCCTCTTGAAAACCTTC GGAATTTTTTTCTTTCCGATCTTAAGCTCCGATGGACCACCTTCACTACTTAGATTGTCA CAAGTATTGGGAACGATATTTGTCGTCTCAGGTGACGATTCTGTACATAGCGTGGGAACC TGTTCATCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3642#0      GACCGACGTTTGGTTTGGATTCATAATCACATGCTGAAAAAATGCGTGGCGAATCTGGAA 60
consensus_3642#1      --CCGACGTTTGGTTTGGATTCATAATCACATGCTGAAAAAATGCGTGGCGAATCTGGAA 58
                        **********************************************************

consensus_3642#0      CTACACATGGAACTGCTGTGCATTCGTCAGCAGACTCTGTGGATATCTCAGACTTCATTC 120
consensus_3642#1      CTACACATGGAACTGCTGTGCATTCGTCAGCAGACTCTGTGGATATCTCAGACTTCATTC 118
                      ************************************************************

consensus_3642#0      TCTTCGGACATGATTCTTCAACAAAACTATCAGCTTGATTGCTGAACTCTGCATTAACGG 180
consensus_3642#1      TCTTCGGACATGATTCTTCAACAAAACTATCAGCTTGATTGCTGAACTCTGCATTAACGG 178
                      ************************************************************

consensus_3642#0      GATTAGAGGTTTCAGCACATAAACGTTTTTTAACCATCGGTTTTTTCCTCTTGAAAACCT 240
consensus_3642#1      GATTAGAGGTTTCAGCACATAAACGTTTTTTAACCATCGGTTTTTTCCTCTTGAAAACCT 238
                      ************************************************************

consensus_3642#0      TCGGAATTTTTTTCTTTCCGATCTTAAGCTCCGATGGACCACCTTCACTACTTAGATTGT 300
consensus_3642#1      TCGGAATTTTTTTCTTTCCGATCTTAAGCTCCGATGGACCACCTTCACTACTTAGATTGT 298
                      ************************************************************

consensus_3642#0      CACAAGTATTGGGAACGATATTTGTCGTCTATGAAGGGTAAACATAGTGGAACATTCTTT 360
consensus_3642#1      CACAAGTATTGGGAACGATATTTGTCGTCT------------------------------ 328
                      ******************************                              

consensus_3642#0      TACCTCAGGTGACGATTCTGTACATAGCGTGGGAACCTGTTCATCGGTCGCCACTGATGT 420
consensus_3642#1      -----CAGGTGACGATTCTGTACATAGCGTGGGAACCTGTTCATCG-------------- 369
                           *****************************************              

consensus_3642#0      AGCTTCTCTATTTGCCAGAGTTCTTTTTAAATTTGTGTCGACTCGTTTTAACGCGTTTCT 480
consensus_3642#1      ------------------------------------------------------------
                                                                                  

consensus_3642#0      GTAGGAGGAATCTTTGCTTAAAATATTCTCAAGACATTTCATAATACCATCCAAACAACA 540
consensus_3642#1      ------------------------------------------------------------
                                                                                  

consensus_3642#0      TNTGTGGACGTCTTCGAATAAGTTNTGTTATCCGAGTAATCAGGGACAGGACACTGTGAG 600
consensus_3642#1      ------------------------------------------------------------
                                                                                  

consensus_3642#0      CGTAAATGTTG 611
consensus_3642#1      -----------
                                 




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)