cluster # 3644

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Schistosoma mansoni
cluster # 3644 cluster # 3644 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3644#0 length = 517 sequences # 1

consensus_3644#1 length = 362 sequences # 1

consensusID : consensus_3644#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 517
fasta sequence

                              [GGTCATATCTGTGTCCTGTCTGATTCTCCAGACAGTAAAACTAAAGACAGTCACAAATAAAGTTTAAATAAATGTCGTTTGAAGTCTTACTGCCTGAGTGCCAGGAATGTGTCAACCAGAAAAATAAAGACAAAAGCACATGCTGGAAATAGCCAAAAGGTGAGCCGGGGTGACGCTTATGAATGAGCCAACAGCAGGCTCCTGTTCTTGCTGTGTGACTCTGAGCTGGTCGCTTTCTCTTGGGGACCCTGTGTCTCTGTATAATGAAGGGCTGGCCTCAGAGGTCCTTCCAGCTCTGACATTCTATGAGCTGACAAACAACACCACAGCCAACTCAGACCTCACCCAAAAGATGGGGGTTGGGGCTGGGGAATGGACGAGGCAGAAGTGCAAGAGCTTCACTGAGCTTCCTCTTCTTCATTCTCTCCAATGACAATGGTGTTGGAACAGGCCTTGAACCTTGTGGCCTTGACCCCAGCAGAGCCAAGAAGCGAAAGAGCACAAACTTGAGAGTCAT]

[+] EMBL CD150594             [GGTCATATCTGTGTCCTGTCTGATTCTCCAGACAGTAAAACTAAAGACAGTCACAAATAAAGTTTAAATAAATGTCGTTTGAAGTCTTACTGCCTGAGTGCCAGGAATGTGTCAACCAGAAAAATAAAGACAAAAGCACATGCTGGAAATAGCCAAAAGGTGAGCCGGGGTGACGCTTATGAATGAGCCAACAGCAGGCTCCTGTTCTTGCTGTGTGACTCTGAGCTGGTCGCTTTCTCTTGGGGACCCTGTGTCTCTGTATAATGAAGGGCTGGCCTCAGAGGTCCTTCCAGCTCTGACATTCTATGAGCTGACAAACAACACCACAGCCAACTCAGACCTCACCCAAAAGATGGGGGTTGGGGCTGGGGAATGGACGAGGCAGAAGTGCAAGAGCTTCACTGAGCTTCCTCTTCTTCATTCTCTCCAATGACAATGGTGTTGGAACAGGCCTTGAACCTTGTGGCCTTGACCCCAGCAGAGCCAAGAAGCGAAAGAGCACAAACTTGAGAGTCAT]




>consensus_3644#0
GGTCATATCTGTGTCCTGTCTGATTCTCCAGACAGTAAAACTAAAGACAGTCACAAATAA
AGTTTAAATAAATGTCGTTTGAAGTCTTACTGCCTGAGTGCCAGGAATGTGTCAACCAGA
AAAATAAAGACAAAAGCACATGCTGGAAATAGCCAAAAGGTGAGCCGGGGTGACGCTTAT
GAATGAGCCAACAGCAGGCTCCTGTTCTTGCTGTGTGACTCTGAGCTGGTCGCTTTCTCT
TGGGGACCCTGTGTCTCTGTATAATGAAGGGCTGGCCTCAGAGGTCCTTCCAGCTCTGAC
ATTCTATGAGCTGACAAACAACACCACAGCCAACTCAGACCTCACCCAAAAGATGGGGGT
TGGGGCTGGGGAATGGACGAGGCAGAAGTGCAAGAGCTTCACTGAGCTTCCTCTTCTTCA
TTCTCTCCAATGACAATGGTGTTGGAACAGGCCTTGAACCTTGTGGCCTTGACCCCAGCA
GAGCCAAGAAGCGAAAGAGCACAAACTTGAGAGTCAT

consensusID : consensus_3644#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 362
fasta sequence

                              [GACGCTTATGAATGAGCCAACAGCAGGCTCCTGTTCTTGCTGTGTGACTCTGAGCTGGTCGCTTTTTTCTTGGGGACCCTGTGTCTCTGTATAATGAAGGGCTGGCCTCAGAGGTCATTTCAAGCTCTGACATTCTATGAGCTGACAAACAACACCACAGCCAACTCAGCCCTCACCCCAAAAGATGGGGTTGGGCCCGGGGAATGGAAGAGGCAGAAGNCCAAGAGCGTCACTGAGCTTCCTCTTCTTCATTCTCTCCAAGGACAAGGGTGGTGGAACAGGGCCGAACCTGGGCCTGACCCCCAGCAGAGCCAAGAAGCAGAAGAGCACCAAACTTGAGAGTCCATCAGCCCTAGCCAGCA]

[-] EMBL CD150571             [GACGCTTATGAATGAGCCAACAGCAGGCTCCTGTTCTTGCTGTGTGACTCTGAGCTGGTCGCTTTTTTCTTGGGGACCCTGTGTCTCTGTATAATGAAGGGCTGGCCTCAGAGGTCATTTCAAGCTCTGACATTCTATGAGCTGACAAACAACACCACAGCCAACTCAGCCCTCACCCCAAAAGATGGGGTTGGGCCCGGGGAATGGAAGAGGCAGAAGNCCAAGAGCGTCACTGAGCTTCCTCTTCTTCATTCTCTCCAAGGACAAGGGTGGTGGAACAGGGCCGAACCTGGGCCTGACCCCCAGCAGAGCCAAGAAGCAGAAGAGCACCAAACTTGAGAGTCCATCAGCCCTAGCCAGCA]




>consensus_3644#1
GACGCTTATGAATGAGCCAACAGCAGGCTCCTGTTCTTGCTGTGTGACTCTGAGCTGGTC
GCTTTTTTCTTGGGGACCCTGTGTCTCTGTATAATGAAGGGCTGGCCTCAGAGGTCATTT
CAAGCTCTGACATTCTATGAGCTGACAAACAACACCACAGCCAACTCAGCCCTCACCCCA
AAAGATGGGGTTGGGCCCGGGGAATGGAAGAGGCAGAAGNCCAAGAGCGTCACTGAGCTT
CCTCTTCTTCATTCTCTCCAAGGACAAGGGTGGTGGAACAGGGCCGAACCTGGGCCTGAC
CCCCAGCAGAGCCAAGAAGCAGAAGAGCACCAAACTTGAGAGTCCATCAGCCCTAGCCAG
CA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3644#0      GGTCATATCTGTGTCCTGTCTGATTCTCCAGACAGTAAAACTAAAGACAGTCACAAATAA 60
consensus_3644#1      ------------------------------------------------------------
                                                                                  

consensus_3644#0      AGTTTAAATAAATGTCGTTTGAAGTCTTACTGCCTGAGTGCCAGGAATGTGTCAACCAGA 120
consensus_3644#1      ------------------------------------------------------------
                                                                                  

consensus_3644#0      AAAATAAAGACAAAAGCACATGCTGGAAATAGCCAAAAGGTGAGCCGGGGTGACGCTTAT 180
consensus_3644#1      ---------------------------------------------------GACGCTTAT 9
                                                                         *********

consensus_3644#0      GAATGAGCCAACAGCAGGCTCCTGTTCTTGCTGTGTGACTCTGAGCTGGTCGCTTTCT-C 239
consensus_3644#1      GAATGAGCCAACAGCAGGCTCCTGTTCTTGCTGTGTGACTCTGAGCTGGTCGCTTTTTTC 69
                      ******************************************************** * *

consensus_3644#0      TTGGGGACCCTGTGTCTCTGTATAATGAAGGGCTGGCCTCAGAGGTCCTTCCA-GCTCTG 298
consensus_3644#1      TTGGGGACCCTGTGTCTCTGTATAATGAAGGGCTGGCCTCAGAGGTCATTTCAAGCTCTG 129
                      *********************************************** ** ** ******

consensus_3644#0      ACATTCTATGAGCTGACAAACAACACCACAGCCAACTCAGACCTCACCCAAAAGATGGGG 358
consensus_3644#1      ACATTCTATGAGCTGACAAACAACACCACAGCCAACTCAGCCCTCACCCCAAAAGATGGG 189
                      **************************************** ******** ***    ***

consensus_3644#0      GTTGGGGCTGGGGAATGGACGAGGCAGAAGTGCAAGAGCTTCACTGAGCTTCCTCTTCTT 418
consensus_3644#1      GTTGGGCCCGGGGAATGGAAGAGGCAGAAGNCCAAGAGCGTCACTGAGCTTCCTCTTCTT 249
                      ****** * ********** **********  ******* ********************

consensus_3644#0      CATTCTCTCCAATGACAATGGTGTTGGAACAGGCCTTGAACCTTGTGGCCTTGACCCCAG 478
consensus_3644#1      CATTCTCTCCAAGGACAAGGGTGGTGGAACAGGGCC-GAACCTG--GGCCTGACCCCCAG 306
                      ************ ***** **** ********* *  ******   *****   ******

consensus_3644#0      CAGAGCCAAGAAGCGAAAGAGCAC-AAACTTGAGAGTC-AT--------------- 517
consensus_3644#1      CAGAGCCAAGAAGCAGAAGAGCACCAAACTTGAGAGTCCATCAGCCCTAGCCAGCA 362
                      **************  ******** ************* **