cluster # 3653

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Schistosoma mansoni
cluster # 3653 cluster # 3653 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3653#0 length = 551 sequences # 1

consensus_3653#1 length = 548 sequences # 1

consensusID : consensus_3653#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 551
fasta sequence

                              [TCATCCCGACTAGCATCCTCCTTTATAAGGTTTGCTTATGATCAAGATTTCCTCATTTCTTAGTTTAGTTAAAGAGTGTCGGTGCTGCTTGGTAAGTAGGCGGTTTGTAGTACTCTTACTATTCTTGTATTGTTGGCTGCTGTCAACTAAAGTGGTCTTAAACTTATATAGCTATCTCCACAGGAGCAGCTGAACTTATAAATGCACATGGAGGAGGCCAACTCAGGTAACTTATTCTTCGTTTGAGTAGACATCACTGGTCGACTCCAGAAAGTCAATGCGAGATAGGCTGCGTAGAAAGTTCTACTAATTACTTTTGTTAACCTATCTTTCAGAGTTTCACTAGCTACATCCCCGTTGAATGGTAATTTCATGTCTAAAGGTTTCTTACGAACAGTTGAAATCTCCGACTTCTTCCTTGTATCATACATGTACTTTTTACTGAACGCAGCAGCGTAGCCGATCTCTGTCAGTGGGTTATAGATAAATTGCAGTTCCTGACTTAAAGTATCAACAGAACAGATCTTATTTGCTCTACTAGTGAGACATCT]

[+] EMBL CD150595             [TCATCCCGACTAGCATCCTCCTTTATAAGGTTTGCTTATGATCAAGATTTCCTCATTTCTTAGTTTAGTTAAAGAGTGTCGGTGCTGCTTGGTAAGTAGGCGGTTTGTAGTACTCTTACTATTCTTGTATTGTTGGCTGCTGTCAACTAAAGTGGTCTTAAACTTATATAGCTATCTCCACAGGAGCAGCTGAACTTATAAATGCACATGGAGGAGGCCAACTCAGGTAACTTATTCTTCGTTTGAGTAGACATCACTGGTCGACTCCAGAAAGTCAATGCGAGATAGGCTGCGTAGAAAGTTCTACTAATTACTTTTGTTAACCTATCTTTCAGAGTTTCACTAGCTACATCCCCGTTGAATGGTAATTTCATGTCTAAAGGTTTCTTACGAACAGTTGAAATCTCCGACTTCTTCCTTGTATCATACATGTACTTTTTACTGAACGCAGCAGCGTAGCCGATCTCTGTCAGTGGGTTATAGATAAATTGCAGTTCCTGACTTAAAGTATCAACAGAACAGATCTTATTTGCTCTACTAGTGAGACATCT]




>consensus_3653#0
TCATCCCGACTAGCATCCTCCTTTATAAGGTTTGCTTATGATCAAGATTTCCTCATTTCT
TAGTTTAGTTAAAGAGTGTCGGTGCTGCTTGGTAAGTAGGCGGTTTGTAGTACTCTTACT
ATTCTTGTATTGTTGGCTGCTGTCAACTAAAGTGGTCTTAAACTTATATAGCTATCTCCA
CAGGAGCAGCTGAACTTATAAATGCACATGGAGGAGGCCAACTCAGGTAACTTATTCTTC
GTTTGAGTAGACATCACTGGTCGACTCCAGAAAGTCAATGCGAGATAGGCTGCGTAGAAA
GTTCTACTAATTACTTTTGTTAACCTATCTTTCAGAGTTTCACTAGCTACATCCCCGTTG
AATGGTAATTTCATGTCTAAAGGTTTCTTACGAACAGTTGAAATCTCCGACTTCTTCCTT
GTATCATACATGTACTTTTTACTGAACGCAGCAGCGTAGCCGATCTCTGTCAGTGGGTTA
TAGATAAATTGCAGTTCCTGACTTAAAGTATCAACAGAACAGATCTTATTTGCTCTACTA
GTGAGACATCT

consensusID : consensus_3653#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 548
fasta sequence

                              [TTTCGGGCACGGGGGACTGGTAGCCGATCTCAGTCAGTAAGTTATAGATAAATTCCAGTTCCTGACTTAAAGTATCAACAGAACAGATCTTATTTGCTCTACTAGTGAGGCATTTAACCAAGTTTCTCTTATATTGGATAGGTGTAAAGCTATAGAAGTGAGTGTATTGGCAGGCAGAGGGTCTTTTTCTATACACGCTTCTACTTAACGAGCCATCACTTCGCCTGCTTAGTGTAACGTCAAGGAAATTCAGCTTCATGTCACACTCGCCTTCACCAGTGAAGCTAATCGCTGGATGTACACTGTTGAACTGTTCAAGTAGTTCATCCTTACTGGTGTTCTGATCCACGACTATGAATGTATCGTCGATGTAGCGGCAGTATAGATCGAGCTTCTTAATAGCCTCCTTAAGTGGGCCATTTTCTAGCTTAGCTAAGAAGAGATCAGCAAGAATCGGGCCTAGAGGGGACGCCCAAGGCAACTCCGGCTATTTGCCCAAAAAAGGATTGTTGAGACGAATGAACATTCAGGTTACTCTAAAAGCGTTC]

[+] EMBL AI739718             [TTTCGGGCACGGGGGACTGGTAGCCGATCTCAGTCAGTAAGTTATAGATAAATTCCAGTTCCTGACTTAAAGTATCAACAGAACAGATCTTATTTGCTCTACTAGTGAGGCATTTAACCAAGTTTCTCTTATATTGGATAGGTGTAAAGCTATAGAAGTGAGTGTATTGGCAGGCAGAGGGTCTTTTTCTATACACGCTTCTACTTAACGAGCCATCACTTCGCCTGCTTAGTGTAACGTCAAGGAAATTCAGCTTCATGTCACACTCGCCTTCACCAGTGAAGCTAATCGCTGGATGTACACTGTTGAACTGTTCAAGTAGTTCATCCTTACTGGTGTTCTGATCCACGACTATGAATGTATCGTCGATGTAGCGGCAGTATAGATCGAGCTTCTTAATAGCCTCCTTAAGTGGGCCATTTTCTAGCTTAGCTAAGAAGAGATCAGCAAGAATCGGGCCTAGAGGGGACGCCCAAGGCAACTCCGGCTATTTGCCCAAAAAAGGATTGTTGAGACGAATGAACATTCAGGTTACTCTAAAAGCGTTC]




>consensus_3653#1
TTTCGGGCACGGGGGACTGGTAGCCGATCTCAGTCAGTAAGTTATAGATAAATTCCAGTT
CCTGACTTAAAGTATCAACAGAACAGATCTTATTTGCTCTACTAGTGAGGCATTTAACCA
AGTTTCTCTTATATTGGATAGGTGTAAAGCTATAGAAGTGAGTGTATTGGCAGGCAGAGG
GTCTTTTTCTATACACGCTTCTACTTAACGAGCCATCACTTCGCCTGCTTAGTGTAACGT
CAAGGAAATTCAGCTTCATGTCACACTCGCCTTCACCAGTGAAGCTAATCGCTGGATGTA
CACTGTTGAACTGTTCAAGTAGTTCATCCTTACTGGTGTTCTGATCCACGACTATGAATG
TATCGTCGATGTAGCGGCAGTATAGATCGAGCTTCTTAATAGCCTCCTTAAGTGGGCCAT
TTTCTAGCTTAGCTAAGAAGAGATCAGCAAGAATCGGGCCTAGAGGGGACGCCCAAGGCA
ACTCCGGCTATTTGCCCAAAAAAGGATTGTTGAGACGAATGAACATTCAGGTTACTCTAA
AAGCGTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3653#0      ------TCATCCCG-ACTAGCATCCTCCTTTATAAGGTTTGCTTATGATCAAGATTTCCT 53
consensus_3653#1      TTTCGGGCACGGGGGACTGGTAGCCGATCTCAGTCAGTAAGTTATAGATAAATTCCAGTT 60
                             **    * *** * * **    * *    **  * *   *** **       *

consensus_3653#0      CATTTCTTAGTTTAGTTAAAGAGTG--TCGGTGCTGCTTGGTAAGTAGGCGGTTTGTAGT 111
consensus_3653#1      CCTGACTTAAAGTATCAACAGAACAGATCTTATTTGCTCTACTAGTGAGGCATTTAACCA 120
                      * *  ****   **   * ***     **     ****     ***  *   ***     

consensus_3653#0      ACTCTTACTATTCTTGTATTGTTG-GCTGCTGTCAACTAAAGTGGTCTTAAACTTATATA 170
consensus_3653#1      AGTTTCTCTTATATTGGATAGGTGTAAAGCTATAGAAGTGAGTGTATTGGCAGGCAGAGG 180
                      * * *  **  * *** ** * **    *** *  *    ****   *   *   * *  

consensus_3653#0      G-CTATCTCCACAGGAGCAGCTGAACTTATAAATGCACATGGAGGAGGCCAACTCAG-GT 228
consensus_3653#1      GTCTTTTTCTATACACGCTTCT--ACTT---AACGAGCCATCACTTCGCCTGCTTAGTGT 235
                      * ** * ** * *   **  **  ****   ** *  *    *    ***  ** ** **

consensus_3653#0      AACTTATTCTTCGTTTGAGTAGACATCACTGGTCGACTCCAGAAAGTCAATGCGAGATAG 288
consensus_3653#1      AACGTCAAGGAAATTCAGCTTCATGTCAC-ACTCGCCTTCACCA-------GTGAAGCTA 287
                      *** *        **    *  *  ****   *** ** **  *       * **     

consensus_3653#0      GCTGCGTAGAAAGTTCTACTAATTACTTTTGTTAACCTATCTTTCAGAGTTTCACTAGCT 348
consensus_3653#1      ATCGCTGGATGTACACTGTTGAACTGTTCAAGTAGTTCATCCTTACTGGTGTTCTGATCC 347
                         **          **  * *    **    **    *** **    ** *    * * 

consensus_3653#0      ACATCCCCGTTGAATGGTAATTTCATGTCTAAAGGTTTCTTACGAACAGTTGAAATCTCC 408
consensus_3653#1      ACGACTA---TGAATG-TATCGTCG-ATGTAGCGGCAGTATA-----GATCGAGCTTCTT 397
                      **  *     ****** **   **   * **  **     **       * **  *    

consensus_3653#0      GACTTCTTCCTTGTATCATACATGTACT--TTTTACTGAACGCAG--CAGCGTAGCCGAT 464
consensus_3653#1      AATAGCCTCCTTAAGTGGGCCATTTTCTAGCTTAGCTAAGAAGAGATCAGCAAGAATCGG 457
                       *   * *****   *    *** * **   **  ** *    **  ****         

consensus_3653#0      CTCTGTCAGTGGGTTATAGATAAATTGCAGTTCCTGACTTAAA---GTATCAACAGAACA 521
consensus_3653#1      GCCTAGAGGGGACGCCCAAGGCAACTCCGGCTATTTGCCCAAAAAAGGATTGTTGAGACG 517
                        **    * *      *    ** * * * *  *  *  ***   * **       ** 

consensus_3653#0      GATCT-TATTTGCTCTACTAGTGAGACATCT 551
consensus_3653#1      AATGAACATTCAGGTTACTCTAAAAGCGTTC 548
                       **    ***     ****    *  * *