cluster # 3692

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Schistosoma mansoni
cluster # 3692 cluster # 3692 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3692#0 length = 222 sequences # 1

consensus_3692#1 length = 164 sequences # 1

consensusID : consensus_3692#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 222
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACCGTTGAAACATGGGAAAATATATTTGAGATAGTAGCTAGTTGACACAAAGGTACAAGAGAAAAAGCACACTTATTGACAAATATTACCCAACTATTCTCTCGGTCTTTTTGCTTCCGGTTCCCCATCATTAGCAGGTGTTGGGGGGGGAGTGGTGGTTGGGAATGGCGGTGGCGCAGCGGTTCGG]

[+] EMBL AI394988             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACCGTTGAAACATGGGAAAATATATTTGAGATAGTAGCTAGTTGACACAAAGGTACAAGAGAAAAAGCACACTTATTGACAAATATTACCCAACTATTCTCTCGGTCTTTTTGCTTCCGGTTCCCCATCATTAGCAGGTGTTGGGGGGGGAGTGGTGGTTGGGAATGGCGGTGGCGCAGCGGTTCGG]




>consensus_3692#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACCGTTGAAACATGGGAAAATATAT
TTGAGATAGTAGCTAGTTGACACAAAGGTACAAGAGAAAAAGCACACTTATTGACAAATA
TTACCCAACTATTCTCTCGGTCTTTTTGCTTCCGGTTCCCCATCATTAGCAGGTGTTGGG
GGGGGAGTGGTGGTTGGGAATGGCGGTGGCGCAGCGGTTCGG

consensusID : consensus_3692#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 164
fasta sequence

                              [GAAAATATATTTGAGATAGTAGCTAGTTGACACAAAGGTACAAGAGAAAAAGCACACTTATTGACAAATATTACCCAACTATTCTCTCGGTCTTTTTGCTTCCGGTTCCCCATCATTAGCAGGTGTTGGGGGGGGAAGTGGTGGTGGTGGNATNNNNNNNNNNN]

[+] EMBL CD073185             [GAAAATATATTTGAGATAGTAGCTAGTTGACACAAAGGTACAAGAGAAAAAGCACACTTATTGACAAATATTACCCAACTATTCTCTCGGTCTTTTTGCTTCCGGTTCCCCATCATTAGCAGGTGTTGGGGGGGGAAGTGGTGGTGGTGGNATNNNNNNNNNNN]




>consensus_3692#1
GAAAATATATTTGAGATAGTAGCTAGTTGACACAAAGGTACAAGAGAAAAAGCACACTTA
TTGACAAATATTACCCAACTATTCTCTCGGTCTTTTTGCTTCCGGTTCCCCATCATTAGC
AGGTGTTGGGGGGGGAAGTGGTGGTGGTGGNATNNNNNNNNNNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3692#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACCGTTGAAACATGGGAAAATATAT 60
consensus_3692#1      --------------------------------------------------GAAAATATAT 10
                                                                        **********

consensus_3692#0      TTGAGATAGTAGCTAGTTGACACAAAGGTACAAGAGAAAAAGCACACTTATTGACAAATA 120
consensus_3692#1      TTGAGATAGTAGCTAGTTGACACAAAGGTACAAGAGAAAAAGCACACTTATTGACAAATA 70
                      ************************************************************

consensus_3692#0      TTACCCAACTATTCTCTCGGTCTTTTTGCTTCCGGTTCCCCATCATTAGCAGGTGTTGGG 180
consensus_3692#1      TTACCCAACTATTCTCTCGGTCTTTTTGCTTCCGGTTCCCCATCATTAGCAGGTGTTGGG 130
                      ************************************************************

consensus_3692#0      GGGGGA-GTGGTGGTTG-GGAATGGCGGTGGCGCAGCGGTTCGG 222
consensus_3692#1      GGGGGAAGTGGTGGTGGTGGNATNNNNNNNNNNN---------- 164
                      ****** ******** * ** **