cluster # 3697

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Schistosoma mansoni
cluster # 3697 cluster # 3697 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3697#0 length = 515 sequences # 1

consensus_3697#1 length = 395 sequences # 1

consensusID : consensus_3697#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 515
fasta sequence

                              [CAGTGTTATTTGCATGATGTACACTAACATGTAGCATAAGAAGTTCCATCGAAATTCCATTTCGCAGATAGAACAGCCCCTTGATGAGCATCTGAAGTTCGTTCTATTCTTTTCTCTTTAAAAATGATGTAACATTTCCCATGAGTAGCTCCGAACTAAAATATTTCACTTTCTCTTGAAGTCTTAGTAAAGAGTTTTGTCTTTTGTCTGGGAAGCCGGTCAATACATGTCTGGAAATACATTTTGGGGCAAGCTGAATAAGTCTGACGCTTGATCTGATATCAGATTCCAACTTTTAACAGCTCGATCGTAAACAATCGAAATTATTTCATCGCGAGACACCCAGGCAACAGAACTATCCAAATCATTATGTTCATGCCGTTAAGTAAATAACTTGTAATATGACGATATGAAAGCACTGTTAGTATGATAAAAAAGGATATGAATTATGAAGCCATTCGTCACGACTCTAATTTTCATTTCTGAACAGCCTACACTTGATACTAAAGAGAAGT]

[+] EMBL CD151814             [CAGTGTTATTTGCATGATGTACACTAACATGTAGCATAAGAAGTTCCATCGAAATTCCATTTCGCAGATAGAACAGCCCCTTGATGAGCATCTGAAGTTCGTTCTATTCTTTTCTCTTTAAAAATGATGTAACATTTCCCATGAGTAGCTCCGAACTAAAATATTTCACTTTCTCTTGAAGTCTTAGTAAAGAGTTTTGTCTTTTGTCTGGGAAGCCGGTCAATACATGTCTGGAAATACATTTTGGGGCAAGCTGAATAAGTCTGACGCTTGATCTGATATCAGATTCCAACTTTTAACAGCTCGATCGTAAACAATCGAAATTATTTCATCGCGAGACACCCAGGCAACAGAACTATCCAAATCATTATGTTCATGCCGTTAAGTAAATAACTTGTAATATGACGATATGAAAGCACTGTTAGTATGATAAAAAAGGATATGAATTATGAAGCCATTCGTCACGACTCTAATTTTCATTTCTGAACAGCCTACACTTGATACTAAAGAGAAGT]




>consensus_3697#0
CAGTGTTATTTGCATGATGTACACTAACATGTAGCATAAGAAGTTCCATCGAAATTCCAT
TTCGCAGATAGAACAGCCCCTTGATGAGCATCTGAAGTTCGTTCTATTCTTTTCTCTTTA
AAAATGATGTAACATTTCCCATGAGTAGCTCCGAACTAAAATATTTCACTTTCTCTTGAA
GTCTTAGTAAAGAGTTTTGTCTTTTGTCTGGGAAGCCGGTCAATACATGTCTGGAAATAC
ATTTTGGGGCAAGCTGAATAAGTCTGACGCTTGATCTGATATCAGATTCCAACTTTTAAC
AGCTCGATCGTAAACAATCGAAATTATTTCATCGCGAGACACCCAGGCAACAGAACTATC
CAAATCATTATGTTCATGCCGTTAAGTAAATAACTTGTAATATGACGATATGAAAGCACT
GTTAGTATGATAAAAAAGGATATGAATTATGAAGCCATTCGTCACGACTCTAATTTTCAT
TTCTGAACAGCCTACACTTGATACTAAAGAGAAGT

consensusID : consensus_3697#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 395
fasta sequence

                              [TATTTGTCCGTCTTCTCCAGATGTAGCAAAAGAAGTTCCATCGAAATTCCATTTCGCAGATAGAACAGCCCCTTGATGAGCATCTGAAGTTCGTTCTATTCTTTTCTCTTTAGAAATGATGTAACATTTCCCATCAGTAGCTCCGAGCAAGAATATTTCACTTTCTCTTGAAGTCTTAGTAGAGTGTTTTGTCTTTTGTCTGGGAAGCCGGTCAATACATGTTGGAAATACATTTTGGGGCAAGCTGAATAAGTCTGACACTTGATCTGATATCAGATTCCAACTTTTAACAGCTCGATCATCAGCAATCGAAATTATTTCATCGCAAGACACCCAGTCAACAGAACTAGCCAAATCATTATGAATTATGAAGTCATTCGTCACGACTTTAATTT]

[-] EMBL CD186090             [TATTTGTCCGTCTTCTCCAGATGTAGCAAAAGAAGTTCCATCGAAATTCCATTTCGCAGATAGAACAGCCCCTTGATGAGCATCTGAAGTTCGTTCTATTCTTTTCTCTTTAGAAATGATGTAACATTTCCCATCAGTAGCTCCGAGCAAGAATATTTCACTTTCTCTTGAAGTCTTAGTAGAGTGTTTTGTCTTTTGTCTGGGAAGCCGGTCAATACATGTTGGAAATACATTTTGGGGCAAGCTGAATAAGTCTGACACTTGATCTGATATCAGATTCCAACTTTTAACAGCTCGATCATCAGCAATCGAAATTATTTCATCGCAAGACACCCAGTCAACAGAACTAGCCAAATCATTATGAATTATGAAGTCATTCGTCACGACTTTAATTT]




>consensus_3697#1
TATTTGTCCGTCTTCTCCAGATGTAGCAAAAGAAGTTCCATCGAAATTCCATTTCGCAGA
TAGAACAGCCCCTTGATGAGCATCTGAAGTTCGTTCTATTCTTTTCTCTTTAGAAATGAT
GTAACATTTCCCATCAGTAGCTCCGAGCAAGAATATTTCACTTTCTCTTGAAGTCTTAGT
AGAGTGTTTTGTCTTTTGTCTGGGAAGCCGGTCAATACATGTTGGAAATACATTTTGGGG
CAAGCTGAATAAGTCTGACACTTGATCTGATATCAGATTCCAACTTTTAACAGCTCGATC
ATCAGCAATCGAAATTATTTCATCGCAAGACACCCAGTCAACAGAACTAGCCAAATCATT
ATGAATTATGAAGTCATTCGTCACGACTTTAATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3697#0      CAGTGTTATTTGCATGATGTACACTAACATGTAGCATAAGAAGTTCCATCGAAATTCCAT 60
consensus_3697#1      ------TATTTGTCCG-TCTTCTCCAG-ATGTAGCAAAAGAAGTTCCATCGAAATTCCAT 52
                            ******   * * * * * *  ******** ***********************

consensus_3697#0      TTCGCAGATAGAACAGCCCCTTGATGAGCATCTGAAGTTCGTTCTATTCTTTTCTCTTTA 120
consensus_3697#1      TTCGCAGATAGAACAGCCCCTTGATGAGCATCTGAAGTTCGTTCTATTCTTTTCTCTTTA 112
                      ************************************************************

consensus_3697#0      AAAATGATGTAACATTTCCCATGAGTAGCTCCGAACTAAAATATTTCACTTTCTCTTGAA 180
consensus_3697#1      GAAATGATGTAACATTTCCCATCAGTAGCTCCGAGCAAGAATATTTCACTTTCTCTTGAA 172
                       ********************* *********** * * *********************

consensus_3697#0      GTCTTAGTAAAGAGTTTTGTCTTTTGTCTGGGAAGCCGGTCAATACATGTCTGGAAATAC 240
consensus_3697#1      GTCTTAGTAGAGTGTTTTGTCTTTTGTCTGGGAAGCCGGTCAATACATGT-TGGAAATAC 231
                      ********* ** ************************************* *********

consensus_3697#0      ATTTTGGGGCAAGCTGAATAAGTCTGACGCTTGATCTGATATCAGATTCCAACTTTTAAC 300
consensus_3697#1      ATTTTGGGGCAAGCTGAATAAGTCTGACACTTGATCTGATATCAGATTCCAACTTTTAAC 291
                      **************************** *******************************

consensus_3697#0      AGCTCGATCGTAAACAATCGAAATTATTTCATCGCGAGACACCCAGGCAACAGAACTATC 360
consensus_3697#1      AGCTCGATCATCAGCAATCGAAATTATTTCATCGCAAGACACCCAGTCAACAGAACTAGC 351
                      ********* * * ********************* ********** *********** *

consensus_3697#0      CAAATCATTATGT-TCATGCCGTTAAGTAA-ATAACTTGTAATATGACGATATGAAAGCA 418
consensus_3697#1      CAAATCATTATGAATTATGAAGTCATTCGTCACGACTT-TAATTT--------------- 395
                      ************  * ***  ** *      *  **** **** *               

consensus_3697#0      CTGTTAGTATGATAAAAAAGGATATGAATTATGAAGCCATTCGTCACGACTCTAATTTTC 478
consensus_3697#1      ------------------------------------------------------------
                                                                                  

consensus_3697#0      ATTTCTGAACAGCCTACACTTGATACTAAAGAGAAGT 515
consensus_3697#1      -------------------------------------