These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3715#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [ATTTAAACTGCTCTCATCATTGACATGTAGATGATACAGAAAGGTGAATAACATCACAGACAACCACAACAAATATTTAAATACTTGTTACATGTTAACGTGTTAGTACTGTGAATATTACATCATTATTACACATTTTACCGAACAAATTGATGGTCCTCTGAAGCAACTCAGGCTACGTAATCCGATCAATCTTAAGCTCCTTGTGCTAATCCTTACTTGACTATTATTTGTGTCCGTATTCTGGATTTTGTGGGAGTTTTACCTCATGTTTCTAAACATGACTGATACAGCCTTTACATCTGAACGCACTTACTGTGAATTCTGTCTTCTCAGAGGTTTATCCGGATTGTCATATATTCTACTTCGACCTTAAAAATGATTTCTGGAGCGTTTCCTACAGAGGAGAATGACTATGACAAAAGCATGTATAAGCATTGGACGAAGTCACTGATATTGTGATTTATGACAAATTCATACTAACTTCGATGTTGATCCGACATCAGCTTGGAAATCAACANATATAGCTGTGCAGTATGAAGTTTGTCCATCCAATCTGCTGCTCTCGACTAATCTTCGCATCACACTAGAATATTTTAAATATATTTATAACAAGATGTTAGT] [+] EMBL CD078767 [ATTTAAACTGCTCTCATCATTGACATGTAGATGATACAGAAAGGTGAATAACATCACAGACAACCACAACAAATATTTAAATACTTGTTACATGTTAACGTGTTAGTACTGTGAATATTACATCATTATTACACATTTTACCGAACAAATTGATGGTCCTCTGAAGCAACTCAGGCTACGTAATCCGATCAATCTTAAGCTCCTTGTGCTAATCCTTACTTGACTATTATTTGTGTCCGTATTCTGGATTTTGTGGGAGTTTTACCTCATGTTTCTAAACATGACTGATACAGCCTTTACATCTGAACGCACTTACTGTGAATTCTGTCTTCTCAGAGGTTTATCCGGATTGTCATATATTCTACTTCGACCTTAAAAATGATTTCTGGAGCGTTTCCTACAGAGGAGAATGACTATGACAAAAGCATGTATAAGCATTGGACGAAGTCACTGATATTGTGATTTATGACAAATTCATACTAACTTCGATGTTGATCCGACATCAGCTTGGAAATCAACANATATAGCTGTGCAGTATGAAGTTTGTCCATCCAATCTGCTGCTCTCGACTAATCTTCGCATCACACTAGAATATTTTAAATATATTTATAACAAGATGTTAGT] consensusID : consensus_3715#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence [CGAAATGTCTATTTATACAAATTGAGTTACATTAAAAACCGAAGTTCATAAAACAGTGGTTTACCAAAAAAGTGGTCCATTATTGTGGAATAGACATAAATTAGTAACAAAACTCAACTCATGAAATATCAATGGGTCTCAAAGCATCTGTCAGTCTGAAAAATGGCTCCCTGCATTAATAACACAGAATAATTATGACATACATTAGTGCGAATGACAGCTTAGTGCTGTGTTTAATCTTGATAACAGTTTATCAACGAGCAAACAAGGAACTAAGAACAAACGAATATGGACACATATGGTAATGACAAACACAATGACTGTTACATGTATGTGCAAATATTTTACAATATTACATGATAAACTGCGTCACAACATGGACGTAAAAATTGCTGAAAACGTATTGTTTGCTAAATATTATTAGGTAGAATAAAACGAAGCACAAAAAAGAATTAGACAAATAAGTCCAGAGAACGTAAGCAAACATAACAACCTCTATGTTTATAAAAGCCTTCTACTAACATCTTGTTATAAATATATTTAAAATATTC] [+] EMBL CD073227 [CGAAATGTCTATTTATACAAATTGAGTTACATTAAAAACCGAAGTTCATAAAACAGTGGTTTACCAAAAAAGTGGTCCATTATTGTGGAATAGACATAAATTAGTAACAAAACTCAACTCATGAAATATCAATGGGTCTCAAAGCATCTGTCAGTCTGAAAAATGGCTCCCTGCATTAATAACACAGAATAATTATGACATACATTAGTGCGAATGACAGCTTAGTGCTGTGTTTAATCTTGATAACAGTTTATCAACGAGCAAACAAGGAACTAAGAACAAACGAATATGGACACATATGGTAATGACAAACACAATGACTGTTACATGTATGTGCAAATATTTTACAATATTACATGATAAACTGCGTCACAACATGGACGTAAAAATTGCTGAAAACGTATTGTTTGCTAAATATTATTAGGTAGAATAAAACGAAGCACAAAAAAGAATTAGACAAATAAGTCCAGAGAACGTAAGCAAACATAACAACCTCTATGTTTATAAAAGCCTTCTACTAACATCTTGTTATAAATATATTTAAAATATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3715#0 ATTTAAACTGCTCTCATCATTGACATGTAGATGATACAGAAAGGTGAATAACATCACAGA 60 consensus_3715#1 --------------------CGAAATGTCTATT-TATACAAAT-TGAGTTACATTAAAAA 38 ** **** ** ** * *** *** * **** * * * consensus_3715#0 C--AACCACAACAAATATTTAAATACTTGTTACATGTTAACGTGTTAGTACTGTGAATAT 118 consensus_3715#1 CCGAAGTTCATAAAACAGTGGTTTACCAAAAAAGTGGTC-CATTATTGTGGAATAGACAT 97 * ** ** *** * * *** * ** * * * * ** * * ** consensus_3715#0 TACATCATTATTACACATTTTACCGAACAAATTGATGGTCCTCTGAAGCAACTCAGGCTA 178 consensus_3715#1 AAATTAGTAACAAAACTCAACTCATGAAATATCAATGGGTCTC-AAAGCATCTGT----- 151 * * * * * ** * * * ** **** *** ***** ** consensus_3715#0 CGTAATCCGATCAATCTTAAGCTCCTTGTGCTAATCCTTACTTGACTATTATTTGTGTCC 238 consensus_3715#1 --CAGTCTGAAAAAT----GGCTCCCTGCATTAATAAC-ACAGAATAATTATGA-----C 199 * ** ** *** ***** ** **** ** * ***** * consensus_3715#0 GTATTCTGGATTTTGTGGGAGTTTTACCTCATGTTTCTAAACATGACTGATACAGCCTTT 298 consensus_3715#1 ATACATTAGTGCGAATGACAGCTTAGTGCTGTGTT--TAATCTTGATA---ACAGTTT-- 252 ** * * ** ** ** **** *** * *** **** * consensus_3715#0 ACATCTGAACGCACTTACTGTGAATTCTGTCTTCTCAGAGGTTTATCCGGATTGTCATAT 358 consensus_3715#1 --ATC--AACGAGCAAACAAGGAACTAAGAACAAACGAATATGGACACATATGGTAATGA 308 *** **** * ** *** * * * * * * * ** ** ** consensus_3715#0 ATTCTACTTCGACCTTAAAAATGATTTCTGGAGCGTTTCCTACAGAGGAGAATGA-CTAT 417 consensus_3715#1 CAAACACAATGACTGTTACATGTATGTGCAAATATTTTACAATATTACATGATAAACTGC 368 ** *** * * * ** * * *** * * * * ** * ** consensus_3715#0 GACAAAAGCATGTATAAGCATTGGACGAAGTCACTGATATTGTGATTTATGACAAATTCA 477 consensus_3715#1 GTCACAA-----CATGGACGTA----AAAATTGCTGAAAACGTATTGTTTGCTAAATAT- 418 * ** ** ** * * ** * **** * ** * * ** **** consensus_3715#0 TACTAACTTCGATGTTGATCCGACATCAGCTTGGAAATCAACANATATAGCTGTGCAGTA 537 consensus_3715#1 TATTAGGTAGAATA--AAACGAAGCACAAAAAAGAATTAGACAAATAAGTCCAGAGAACG 476 ** ** * ** * * * ** *** * *** *** * * consensus_3715#0 TGAAGTTTGTCCATCCAATCTGCTGCTCTCGACTAATCTTCGCATCACACTAGAATATTT 597 consensus_3715#1 T-AAGCAAACATAAC-AACCTCTATGTTTATAAAAGCCTTCTACTAACATCT---TGTTA 531 * *** * * ** ** * * * * **** * *** * ** consensus_3715#0 TAAATATATTTATAACAAGATGTTAGT 624 consensus_3715#1 TAAATATATTTAAAATATTC------- 551 ************ ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||