cluster # 3715

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Schistosoma mansoni
cluster # 3715 cluster # 3715 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3715#0 length = 624 sequences # 1

consensus_3715#1 length = 551 sequences # 1

consensusID : consensus_3715#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 624
fasta sequence

                              [ATTTAAACTGCTCTCATCATTGACATGTAGATGATACAGAAAGGTGAATAACATCACAGACAACCACAACAAATATTTAAATACTTGTTACATGTTAACGTGTTAGTACTGTGAATATTACATCATTATTACACATTTTACCGAACAAATTGATGGTCCTCTGAAGCAACTCAGGCTACGTAATCCGATCAATCTTAAGCTCCTTGTGCTAATCCTTACTTGACTATTATTTGTGTCCGTATTCTGGATTTTGTGGGAGTTTTACCTCATGTTTCTAAACATGACTGATACAGCCTTTACATCTGAACGCACTTACTGTGAATTCTGTCTTCTCAGAGGTTTATCCGGATTGTCATATATTCTACTTCGACCTTAAAAATGATTTCTGGAGCGTTTCCTACAGAGGAGAATGACTATGACAAAAGCATGTATAAGCATTGGACGAAGTCACTGATATTGTGATTTATGACAAATTCATACTAACTTCGATGTTGATCCGACATCAGCTTGGAAATCAACANATATAGCTGTGCAGTATGAAGTTTGTCCATCCAATCTGCTGCTCTCGACTAATCTTCGCATCACACTAGAATATTTTAAATATATTTATAACAAGATGTTAGT]

[+] EMBL CD078767             [ATTTAAACTGCTCTCATCATTGACATGTAGATGATACAGAAAGGTGAATAACATCACAGACAACCACAACAAATATTTAAATACTTGTTACATGTTAACGTGTTAGTACTGTGAATATTACATCATTATTACACATTTTACCGAACAAATTGATGGTCCTCTGAAGCAACTCAGGCTACGTAATCCGATCAATCTTAAGCTCCTTGTGCTAATCCTTACTTGACTATTATTTGTGTCCGTATTCTGGATTTTGTGGGAGTTTTACCTCATGTTTCTAAACATGACTGATACAGCCTTTACATCTGAACGCACTTACTGTGAATTCTGTCTTCTCAGAGGTTTATCCGGATTGTCATATATTCTACTTCGACCTTAAAAATGATTTCTGGAGCGTTTCCTACAGAGGAGAATGACTATGACAAAAGCATGTATAAGCATTGGACGAAGTCACTGATATTGTGATTTATGACAAATTCATACTAACTTCGATGTTGATCCGACATCAGCTTGGAAATCAACANATATAGCTGTGCAGTATGAAGTTTGTCCATCCAATCTGCTGCTCTCGACTAATCTTCGCATCACACTAGAATATTTTAAATATATTTATAACAAGATGTTAGT]




>consensus_3715#0
ATTTAAACTGCTCTCATCATTGACATGTAGATGATACAGAAAGGTGAATAACATCACAGA
CAACCACAACAAATATTTAAATACTTGTTACATGTTAACGTGTTAGTACTGTGAATATTA
CATCATTATTACACATTTTACCGAACAAATTGATGGTCCTCTGAAGCAACTCAGGCTACG
TAATCCGATCAATCTTAAGCTCCTTGTGCTAATCCTTACTTGACTATTATTTGTGTCCGT
ATTCTGGATTTTGTGGGAGTTTTACCTCATGTTTCTAAACATGACTGATACAGCCTTTAC
ATCTGAACGCACTTACTGTGAATTCTGTCTTCTCAGAGGTTTATCCGGATTGTCATATAT
TCTACTTCGACCTTAAAAATGATTTCTGGAGCGTTTCCTACAGAGGAGAATGACTATGAC
AAAAGCATGTATAAGCATTGGACGAAGTCACTGATATTGTGATTTATGACAAATTCATAC
TAACTTCGATGTTGATCCGACATCAGCTTGGAAATCAACANATATAGCTGTGCAGTATGA
AGTTTGTCCATCCAATCTGCTGCTCTCGACTAATCTTCGCATCACACTAGAATATTTTAA
ATATATTTATAACAAGATGTTAGT

consensusID : consensus_3715#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 551
fasta sequence

                              [CGAAATGTCTATTTATACAAATTGAGTTACATTAAAAACCGAAGTTCATAAAACAGTGGTTTACCAAAAAAGTGGTCCATTATTGTGGAATAGACATAAATTAGTAACAAAACTCAACTCATGAAATATCAATGGGTCTCAAAGCATCTGTCAGTCTGAAAAATGGCTCCCTGCATTAATAACACAGAATAATTATGACATACATTAGTGCGAATGACAGCTTAGTGCTGTGTTTAATCTTGATAACAGTTTATCAACGAGCAAACAAGGAACTAAGAACAAACGAATATGGACACATATGGTAATGACAAACACAATGACTGTTACATGTATGTGCAAATATTTTACAATATTACATGATAAACTGCGTCACAACATGGACGTAAAAATTGCTGAAAACGTATTGTTTGCTAAATATTATTAGGTAGAATAAAACGAAGCACAAAAAAGAATTAGACAAATAAGTCCAGAGAACGTAAGCAAACATAACAACCTCTATGTTTATAAAAGCCTTCTACTAACATCTTGTTATAAATATATTTAAAATATTC]

[+] EMBL CD073227             [CGAAATGTCTATTTATACAAATTGAGTTACATTAAAAACCGAAGTTCATAAAACAGTGGTTTACCAAAAAAGTGGTCCATTATTGTGGAATAGACATAAATTAGTAACAAAACTCAACTCATGAAATATCAATGGGTCTCAAAGCATCTGTCAGTCTGAAAAATGGCTCCCTGCATTAATAACACAGAATAATTATGACATACATTAGTGCGAATGACAGCTTAGTGCTGTGTTTAATCTTGATAACAGTTTATCAACGAGCAAACAAGGAACTAAGAACAAACGAATATGGACACATATGGTAATGACAAACACAATGACTGTTACATGTATGTGCAAATATTTTACAATATTACATGATAAACTGCGTCACAACATGGACGTAAAAATTGCTGAAAACGTATTGTTTGCTAAATATTATTAGGTAGAATAAAACGAAGCACAAAAAAGAATTAGACAAATAAGTCCAGAGAACGTAAGCAAACATAACAACCTCTATGTTTATAAAAGCCTTCTACTAACATCTTGTTATAAATATATTTAAAATATTC]




>consensus_3715#1
CGAAATGTCTATTTATACAAATTGAGTTACATTAAAAACCGAAGTTCATAAAACAGTGGT
TTACCAAAAAAGTGGTCCATTATTGTGGAATAGACATAAATTAGTAACAAAACTCAACTC
ATGAAATATCAATGGGTCTCAAAGCATCTGTCAGTCTGAAAAATGGCTCCCTGCATTAAT
AACACAGAATAATTATGACATACATTAGTGCGAATGACAGCTTAGTGCTGTGTTTAATCT
TGATAACAGTTTATCAACGAGCAAACAAGGAACTAAGAACAAACGAATATGGACACATAT
GGTAATGACAAACACAATGACTGTTACATGTATGTGCAAATATTTTACAATATTACATGA
TAAACTGCGTCACAACATGGACGTAAAAATTGCTGAAAACGTATTGTTTGCTAAATATTA
TTAGGTAGAATAAAACGAAGCACAAAAAAGAATTAGACAAATAAGTCCAGAGAACGTAAG
CAAACATAACAACCTCTATGTTTATAAAAGCCTTCTACTAACATCTTGTTATAAATATAT
TTAAAATATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3715#0      ATTTAAACTGCTCTCATCATTGACATGTAGATGATACAGAAAGGTGAATAACATCACAGA 60
consensus_3715#1      --------------------CGAAATGTCTATT-TATACAAAT-TGAGTTACATTAAAAA 38
                                           ** ****  **  ** * ***  *** * **** * * *

consensus_3715#0      C--AACCACAACAAATATTTAAATACTTGTTACATGTTAACGTGTTAGTACTGTGAATAT 118
consensus_3715#1      CCGAAGTTCATAAAACAGTGGTTTACCAAAAAAGTGGTC-CATTATTGTGGAATAGACAT 97
                      *  **   **  *** * *    ***     *  ** *  * *  * **    *  * **

consensus_3715#0      TACATCATTATTACACATTTTACCGAACAAATTGATGGTCCTCTGAAGCAACTCAGGCTA 178
consensus_3715#1      AAATTAGTAACAAAACTCAACTCATGAAATATCAATGGGTCTC-AAAGCATCTGT----- 151
                       *  *  * *  * **      *   * * **  ****  ***  ***** **       

consensus_3715#0      CGTAATCCGATCAATCTTAAGCTCCTTGTGCTAATCCTTACTTGACTATTATTTGTGTCC 238
consensus_3715#1      --CAGTCTGAAAAAT----GGCTCCCTGCATTAATAAC-ACAGAATAATTATGA-----C 199
                         * ** **  ***     ***** **   ****    **   *  *****       *

consensus_3715#0      GTATTCTGGATTTTGTGGGAGTTTTACCTCATGTTTCTAAACATGACTGATACAGCCTTT 298
consensus_3715#1      ATACATTAGTGCGAATGACAGCTTAGTGCTGTGTT--TAATCTTGATA---ACAGTTT-- 252
                       **   * *      **  ** **       ****  *** * ***     ****  *  

consensus_3715#0      ACATCTGAACGCACTTACTGTGAATTCTGTCTTCTCAGAGGTTTATCCGGATTGTCATAT 358
consensus_3715#1      --ATC--AACGAGCAAACAAGGAACTAAGAACAAACGAATATGGACACATATGGTAATGA 308
                        ***  ****  *  **   *** *  *      *  *  *  *  *  ** ** **  

consensus_3715#0      ATTCTACTTCGACCTTAAAAATGATTTCTGGAGCGTTTCCTACAGAGGAGAATGA-CTAT 417
consensus_3715#1      CAAACACAATGACTGTTACATGTATGTGCAAATATTTTACAATATTACATGATAAACTGC 368
                           **   ***  * * *   ** *    *   *** * * *    *  ** * **  

consensus_3715#0      GACAAAAGCATGTATAAGCATTGGACGAAGTCACTGATATTGTGATTTATGACAAATTCA 477
consensus_3715#1      GTCACAA-----CATGGACGTA----AAAATTGCTGAAAACGTATTGTTTGCTAAATAT- 418
                      * ** **      **   * *      ** *  **** *  **  * * **  ****   

consensus_3715#0      TACTAACTTCGATGTTGATCCGACATCAGCTTGGAAATCAACANATATAGCTGTGCAGTA 537
consensus_3715#1      TATTAGGTAGAATA--AAACGAAGCACAAAAAAGAATTAGACAAATAAGTCCAGAGAACG 476
                      ** **  *   **    * *  *   **     *** *  *** ***   *     *   

consensus_3715#0      TGAAGTTTGTCCATCCAATCTGCTGCTCTCGACTAATCTTCGCATCACACTAGAATATTT 597
consensus_3715#1      T-AAGCAAACATAAC-AACCTCTATGTTTATAAAAGCCTTCTACTAACATCT---TGTTA 531
                      * ***       * * ** **     * *  *  *  ****   * ***      * ** 

consensus_3715#0      TAAATATATTTATAACAAGATGTTAGT 624
consensus_3715#1      TAAATATATTTAAAATATTC------- 551
                      ************ ** *