These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3717#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 357 fasta sequence [AGGGCACCTATGCCTGAGTCGTTGATCAATGAATCTTCTGAGAATAATAACTTTCGATCAGCAAACGTTCCTTCAGAGTCGGATAACAGGGAAACCCAGCCGAGAGTTCACTCCAGCTCCCCATTGAATGATGCAATAAATGTAGAAGAAAATGAAAATAATTTACATGTCCTTAATGATTCTATCCATCCTGTAATTATGAGGAGTTCTCCGACTACCTCTCAGTGTCAGGATAATCTTGGCGGATTATCACAACCTATCAATTCTGATCATTCAAATCATCATTGTTCTGTATCATTGGATTCTGCAGTAAACTCTAATCACCATGCTTCATCTGTAATGTCCACTAAAATAGAT] [+] EMBL CD169326 [AGGGCACCTATGCCTGAGTCGTTGATCAATGAATCTTCTGAGAATAATAACTTTCGATCAGCAAACGTTCCTTCAGAGTCGGATAACAGGGAAACCCAGCCGAGAGTTCACTCCAGCTCCCCATTGAATGATGCAATAAATGTAGAAGAAAATGAAAATAATTTACATGTCCTTAATGATTCTATCCATCCTGTAATTATGAGGAGTTCTCCGACTACCTCTCAGTGTCAGGATAATCTTGGCGGATTATCACAACCTATCAATTCTGATCATTCAAATCATCATTGTTCTGTATCATTGGATTCTGCAGTAAACTCTAATCACCATGCTTCATCTGTAATGTCCACTAAAATAGAT] consensusID : consensus_3717#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 282 fasta sequence [AATAACATGTATAAGGAAGATGAAAATAATTTACATGTCCTTAATGATTCTATCCATCCTGTAATTATGAGGAGTTCTCCGACTACCTCTCAGTGTCAGGTAATTAATTCATATCCGGTATACTACTTACTTTATTAGTCCTTATTTAATCTGATTCTAAATTGTTTTCAGTTTAATATGGCGAACTCTCATTTAGTAGTATTTGTGGGCATATAATAATAGTGCATGACCACTACCCATTTAACTTAATTCATCCATAGCGCACATAACATGAAGAGAACT] [+] EMBL CD152001 [AATAACATGTATAAGGAAGATGAAAATAATTTACATGTCCTTAATGATTCTATCCATCCTGTAATTATGAGGAGTTCTCCGACTACCTCTCAGTGTCAGGTAATTAATTCATATCCGGTATACTACTTACTTTATTAGTCCTTATTTAATCTGATTCTAAATTGTTTTCAGTTTAATATGGCGAACTCTCATTTAGTAGTATTTGTGGGCATATAATAATAGTGCATGACCACTACCCATTTAACTTAATTCATCCATAGCGCACATAACATGAAGAGAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3717#0 AGGGCACCTATGCCTGAGTCGTTGATCAATGAATCTTCTGAGAATAATAACTTTCGATCA 60 consensus_3717#1 ------------------------------------------------------------ consensus_3717#0 GCAAACGTTCCTTCAGAGTCGGATAACAGGGAAACCCAGCCGAGAGTTCACTCCAGCTCC 120 consensus_3717#1 ------------------------------------------------------------ consensus_3717#0 CCATTGAATGATGCAATAA-ATGTAGAAGAAA-ATGAAAATAATTTACATGTCCTTAATG 178 consensus_3717#1 --------------AATAACATGTATAAGGAAGATGAAAATAATTTACATGTCCTTAATG 46 ***** ***** *** ** *************************** consensus_3717#0 ATTCTATCCATCCTGTAATTATGAGGAGTTCTCCGACTACCTCTCAGTGTCAGGA---TA 235 consensus_3717#1 ATTCTATCCATCCTGTAATTATGAGGAGTTCTCCGACTACCTCTCAGTGTCAGGTAATTA 106 ****************************************************** ** consensus_3717#0 ATCTTGG--CGGATTATCAC--AACCTATCAATTCTGATC--ATTCAAATCATCATTGTT 289 consensus_3717#1 ATTCATATCCGGTATACTACTTACTTTATTAGTCCTTATTTAATCTGATTCTAAATTGTT 166 ** *** ** ** * *** * * ** ** ** * ** ****** consensus_3717#0 CT--GTATCAT----TGGATTCTG---CAGTAAACTCTA-------ATCACCATGCTTCA 333 consensus_3717#1 TTCAGTTTAATATGGCGAACTCTCATTTAGTAGTATTTGTGGGCATATAATAATAGTGCA 226 * ** * ** * * *** **** * * ** * ** * ** consensus_3717#0 TCTGTAATGTCCACTAAAATAGAT-------------------------------- 357 consensus_3717#1 TGACCACTACCCATTTAACTTAATTCATCCATAGCGCACATAACATGAAGAGAACT 282 * * * *** * ** * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||