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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_374#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence
[AGCCCGGTACCCTGGCTTCCACATCATCTCCTCGTGGAAGAGATGGGATGACGACATGCGACGTTTGAGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTTGGAAAATCCATTCGCATTAATGCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTACGAAGTAGGTGAGGATGGCAAGGTACATTTCAAGGTACGATTCGATGCGCAAGGTTTCGCTCCTCAGGACATCAATGTGACGTCGAGTGAGAACCGTGTGACGGTACACGCGAAGAAGGAGACGACGACCGATGGTAGGAAGTGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGATGGTGTTTTGATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGTCAGGTGGCTGTTCGACCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAGCTCTTGTTGCGAAAGGTGTTCATGGTCTGTCGTATGTGGATGATGGTTCANGTGGGAAGCGACTGCATGTTGAAGTTCCAGTGGACCCAGTGTGCAAACCTGAAGACT]
[+] EMBL CD067968 [AGCCCGGTACCCTGGCTTCCACATCATCTCCTCGTGGAAGAGATGGGATGACGACATGCGACGTTTGAGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTTGGAAAATCCATTCGCATTAATGCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTACGAAGTAGGTGAGGATGGCAAGGTACATTTCAAGGTACGATTCGATGCGCAAGGTTTCGCTCCTCAGGACATCAATGTGACGTCGAGTGAGAACCGTGTGACGGTACACGCGAAGAAGGAGACGACGACCGATGGTAGGAAGTGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGATGGTGTTTTGATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGTCAGGTGGCTGTTCGACCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAGCTCTTGTTGCGAAAGGTGTTCATGGTCTGTCGTATGTGGATGATGGTTCANGTGGGAAGCGACTGCATGTTGAAGTTCCAGTGGACCCAGTGTGCAAACCTGAAGACT]
consensusID : consensus_374#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence
[GGCTCCAGTGAAGTTGATCAGACCCGTCGTTGACGCTGAACGGTCTGTCAGTTTGCTGTTCGACCGAATCGGACAACAGATTAAGGCGTTCCTGCATCACAACTCTTGTTGCGAAAGTGTTCATGGTCTGTCGTATGTGGATGATGTTCCAGGTGGGAAGCGACTGCATGTTGAAGTTCCAGTGGACCCAGTGTACAAACCTGAAGACTTGTTTGTGAATGTTGACTCGAATCGTGTTGTGGTTAGTGGACGTCATCATAAGCAGAAGAGTGATCAACATGGAAGGTCGAGCTCATTCGCAGAGTTCAGTCAGTCGTATGCGATTCCAGAGACAGTTGATCCGTTATCTGTTTCTGCTCAGGTAGTTGGCAATACATTGGTATTGGAGGCGCCATTGGAGAAGCAACATGCGATTACTCACTAGAAGAGTATATGTTTTACTGAACTAATCGTTGCTTAATGTTACAATATTTATGTAATTTTTCCTAATAAATATTTTTAAATTTTAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL AI395781 [GGCTCCAGTGAAGTTGATCAGACCCGTCGTTGACGCTGAACGGTCTGTCAGTTTGCTGTTCGACCGAATCGGACAACAGATTAAGGCGTTCCTGCATCACAACTCTTGTTGCGAAAGTGTTCATGGTCTGTCGTATGTGGATGATGTTCCAGGTGGGAAGCGACTGCATGTTGAAGTTCCAGTGGACCCAGTGTACAAACCTGAAGACTTGTTTGTGAATGTTGACTCGAATCGTGTTGTGGTTAGTGGACGTCATCATAAGCAGAAGAGTGATCAACATGGAAGGTCGAGCTCATTCGCAGAGTTCAGTCAGTCGTATGCGATTCCAGAGACAGTTGATCCGTTATCTGTTTCTGCTCAGGTAGTTGGCAATACATTGGTATTGGAGGCGCCATTGGAGAAGCAACATGCGATTACTCACTAGAAGAGTATATGTTTTACTGAACTAATCGTTGCTTAATGTTACAATATTTATGTAATTTTTCCTAATAAATATTTTTAAATTTTAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_374#0 AGCCCGGTACCCTGGCTTCCACATCATCTCCTCGTGGAAGAGATGGGATGACGACATGCG 60
consensus_374#1 ------------------------------------------------------------
consensus_374#0 ACGTTTGAGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTT 120
consensus_374#1 ---------------------GGCTCCAGTGAAGTTGATCAGACCCGTCGTTG--ACGCT 37
** * * * *** * * * ** * *
consensus_374#0 GGAAAATCCATTCGCAT--TAATGCACCAAATGGATCGTCAAATCCAGGATATCCGAGAG 178
consensus_374#1 GAACGGTCTGTCAGTTTGCTGTTCGACCGAATCGGACAACAGATTAAGGCGTTCCT---- 93
* * ** * * * * * *** *** * * ** ** *** ***
consensus_374#0 AGAATGGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCC 238
consensus_374#1 ------GCATCACAACTCTTGTTGCGAAAGTGTTCA-TGGTCTGTCGTATGTGGATGATG 146
* *** ** * * ***** ** * * ** *
consensus_374#0 TACGAAGTAGGTGAGGATGGCAAGGTACATTTCAAGGTACGATTCGATGCGCAAGGTTT- 297
consensus_374#1 TTCCAGGTGGGAAGCGACTGCATGTTGAAGTTCCAGT--GGACCCAGTGTACAAACCTGA 204
* * * ** ** ** *** * * * *** ** ** * ** *** *
consensus_374#0 ---CGCTCCTCAGGACATCAATGTGA--CGTCGAGTGAGAACCGTGTGACGGTACACGCG 352
consensus_374#1 AGACTTGTTTGTGAATGTTGACTCGAATCGTGTTGTGGTTAGTGGACGTCATCATAAGCA 264
* * * * * * ** *** *** * * * * * * **
consensus_374#0 AAGAAGGAGACGACGACCGATGGTAGGAAGTGTAGTCG-GGAGTTCTGTCGTATG-GTGC 410
consensus_374#1 GAAGAGTGATCAAC-ATGGAAGGTCG--AGCTCATTCGCAGAGTTCAGTCAGTCGTATGC 321
* ** * ** * ** *** * ** * *** ****** *** * ***
consensus_374#0 AGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGATGGTGTTT 470
consensus_374#1 GATT-CCAGAGACAGTTGAT--CCGTTATCTGTTTCTGCTCA-GGTAGTTGGCAATACAT 377
* ** *** ***** ** * *** * ** * ** ** * *
consensus_374#0 TGATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTG 530
consensus_374#1 TGGTATTGGAGGCGCCATTGGAGA--AGCAACATGCGATTACT--CACTAGAAGAGTATA 433
** * ******** *** ** ** * * * * * * ** * **** *
consensus_374#0 GTCAGGTGGCTGTTCGACCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAG 590
consensus_374#1 ----------TGTTTTACTGAACTAATCGTTGCTTAATGTTACAATATTTATGT----AA 479
**** ** *** * * * * ** * * * *
consensus_374#0 CTCTTGTTGCGAAAGGTGTTCATGGTCTGTCGTATGTGGATGATGGTTCANGTGGGAAGC 650
consensus_374#1 TTTTTCCTAATAAATATTTTTAAATTTTAAAAAAAAAAAAAAAAAAAAAAAA-------- 531
* ** * *** * ** * * * * * * *
consensus_374#0 GACTGCATGTTGAAGTTCCAGTGGACCCAGTGTGCAAACCTGAAGACT 698
consensus_374#1 ------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||