cluster # 3743

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Schistosoma mansoni
cluster # 3743 cluster # 3743 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3743#0 length = 296 sequences # 1

consensus_3743#1 length = 143 sequences # 1

consensusID : consensus_3743#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 296
fasta sequence

                              [TGCATGATGTCATCTTATATATGATTGTAATGCAACGTGCACGAGCCTTGAAATATATTTAAAAAACTNCACCGTACATGTGAAAATGTATTTAAAGATGATATCGAAACATTACAAAACGCCAGAGAAAAGATTAATTCGGAGTTTCGAGCTAATCGAAATGAAACTGATGCAGAAAAAAATAAACGAATTATTGGTAAAAGCAGAAGATTGTGAAATACTAATCAGAACAACAGTTATTCAAATGGAAACTCATCGATGCTGAGAAAAATGTGTATAGAAATGGAATCTNCGTG]

[+] EMBL AA559644             [TGCATGATGTCATCTTATATATGATTGTAATGCAACGTGCACGAGCCTTGAAATATATTTAAAAAACTNCACCGTACATGTGAAAATGTATTTAAAGATGATATCGAAACATTACAAAACGCCAGAGAAAAGATTAATTCGGAGTTTCGAGCTAATCGAAATGAAACTGATGCAGAAAAAAATAAACGAATTATTGGTAAAAGCAGAAGATTGTGAAATACTAATCAGAACAACAGTTATTCAAATGGAAACTCATCGATGCTGAGAAAAATGTGTATAGAAATGGAATCTNCGTG]




>consensus_3743#0
TGCATGATGTCATCTTATATATGATTGTAATGCAACGTGCACGAGCCTTGAAATATATTT
AAAAAACTNCACCGTACATGTGAAAATGTATTTAAAGATGATATCGAAACATTACAAAAC
GCCAGAGAAAAGATTAATTCGGAGTTTCGAGCTAATCGAAATGAAACTGATGCAGAAAAA
AATAAACGAATTATTGGTAAAAGCAGAAGATTGTGAAATACTAATCAGAACAACAGTTAT
TCAAATGGAAACTCATCGATGCTGAGAAAAATGTGTATAGAAATGGAATCTNCGTG

consensusID : consensus_3743#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 143
fasta sequence

                              [GAGTTTCGAGCTAATCGAAATGAAACTGATGCAGGAAAAATAAAACGAATTATTGGTAAAAGCAGAAGATTGTGAAATAACTAATCATAAACACCAGGTTATTCCAGATGGGACCTCATCGGATGACTGGGAAAAATTGTGGT]

[+] EMBL AW186636             [GAGTTTCGAGCTAATCGAAATGAAACTGATGCAGGAAAAATAAAACGAATTATTGGTAAAAGCAGAAGATTGTGAAATAACTAATCATAAACACCAGGTTATTCCAGATGGGACCTCATCGGATGACTGGGAAAAATTGTGGT]




>consensus_3743#1
GAGTTTCGAGCTAATCGAAATGAAACTGATGCAGGAAAAATAAAACGAATTATTGGTAAA
AGCAGAAGATTGTGAAATAACTAATCATAAACACCAGGTTATTCCAGATGGGACCTCATC
GGATGACTGGGAAAAATTGTGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3743#0      TGCATGATGTCATCTTATATATGATTGTAATGCAACGTGCACGAGCCTTGAAATATATTT 60
consensus_3743#1      ------------------------------------------------------------
                                                                                  

consensus_3743#0      AAAAAACTNCACCGTACATGTGAAAATGTATTTAAAGATGATATCGAAACATTACAAAAC 120
consensus_3743#1      ------------------------------------------------------------
                                                                                  

consensus_3743#0      GCCAGAGAAAAGATTAATTCGGAGTTTCGAGCTAATCGAAATGAAACTGATGCAGAAAAA 180
consensus_3743#1      ---------------------GAGTTTCGAGCTAATCGAAATGAAACTGATGCAGGAAAA 39
                                           ********************************** ****

consensus_3743#0      AATAAACGAATTATTGGTAAAAGCAGAAGATTGTGAAATA-CTAATCA-GAACAACAG-T 237
consensus_3743#1      ATAAAACGAATTATTGGTAAAAGCAGAAGATTGTGAAATAACTAATCATAAACACCAGGT 99
                      *  ************************************* *******  **** *** *

consensus_3743#0      TATTC-AAATGGAAACTCATCG-ATG-CTGAGAAAAATGTGTATAGAAATGGAATCTNCG 294
consensus_3743#1      TATTCCAGATGGGACCTCATCGGATGACTGGGAAAAAT-TGTGGT--------------- 143
                      ***** * **** * ******* *** *** ******* ***                  

consensus_3743#0      TG 296
consensus_3743#1      --