cluster # 375

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Schistosoma mansoni
cluster # 375 cluster # 375 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_375#0 length = 650 sequences # 1

consensus_375#1 length = 475 sequences # 1

consensusID : consensus_375#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 650
fasta sequence

                              [ACATTCACTCAATACATCCACATGTACACCATTCATTCACACCATCTCACAAATCATCATATCGCTATACACATTAGTCAAATTGAACAACCAACACAACTGTGTCCACCATCAACCCAATCGAAATTCAATTCCATCATTTACTAATTCACGAACACACACACTCACAACCATCAGACACAACTATCCCACACACCGAGTCGCATCAACTCCATACAGAAATAACTCCACTGATACTACACAACAATCATCTGTCCCACACCAATCTCTCTTCAACGACTACACTCATGCGAATGATTGTCGTCAGAACATATCCACACTCACCATCAGAGACACACACGCACACGCACATGCACACACTCACATACAAGCACTCATTGTCAGAATCACTTCACCATCAATTCTGTATACAGTCTCAGTGTTTTACAATGGAACACCGAGTCAATCAGTGATGTGCCGTACTCTTAATCAATCATCCAATCCTTCACGCATGCATGCATGCATGCATGCATTCATTCATTCATTCATTCATGGATTCATTGATTCACCCTCTCACTAATTCATCGAGATATTCAATCGATCAGTTGGTGTGTGTTCGTCTGACCACCTGAAGGATATTGAATGGGACTGGATTTGGTAAATGAATGCAT]

[+] EMBL CD066164             [ACATTCACTCAATACATCCACATGTACACCATTCATTCACACCATCTCACAAATCATCATATCGCTATACACATTAGTCAAATTGAACAACCAACACAACTGTGTCCACCATCAACCCAATCGAAATTCAATTCCATCATTTACTAATTCACGAACACACACACTCACAACCATCAGACACAACTATCCCACACACCGAGTCGCATCAACTCCATACAGAAATAACTCCACTGATACTACACAACAATCATCTGTCCCACACCAATCTCTCTTCAACGACTACACTCATGCGAATGATTGTCGTCAGAACATATCCACACTCACCATCAGAGACACACACGCACACGCACATGCACACACTCACATACAAGCACTCATTGTCAGAATCACTTCACCATCAATTCTGTATACAGTCTCAGTGTTTTACAATGGAACACCGAGTCAATCAGTGATGTGCCGTACTCTTAATCAATCATCCAATCCTTCACGCATGCATGCATGCATGCATGCATTCATTCATTCATTCATTCATGGATTCATTGATTCACCCTCTCACTAATTCATCGAGATATTCAATCGATCAGTTGGTGTGTGTTCGTCTGACCACCTGAAGGATATTGAATGGGACTGGATTTGGTAAATGAATGCAT]




>consensus_375#0
ACATTCACTCAATACATCCACATGTACACCATTCATTCACACCATCTCACAAATCATCAT
ATCGCTATACACATTAGTCAAATTGAACAACCAACACAACTGTGTCCACCATCAACCCAA
TCGAAATTCAATTCCATCATTTACTAATTCACGAACACACACACTCACAACCATCAGACA
CAACTATCCCACACACCGAGTCGCATCAACTCCATACAGAAATAACTCCACTGATACTAC
ACAACAATCATCTGTCCCACACCAATCTCTCTTCAACGACTACACTCATGCGAATGATTG
TCGTCAGAACATATCCACACTCACCATCAGAGACACACACGCACACGCACATGCACACAC
TCACATACAAGCACTCATTGTCAGAATCACTTCACCATCAATTCTGTATACAGTCTCAGT
GTTTTACAATGGAACACCGAGTCAATCAGTGATGTGCCGTACTCTTAATCAATCATCCAA
TCCTTCACGCATGCATGCATGCATGCATGCATTCATTCATTCATTCATTCATGGATTCAT
TGATTCACCCTCTCACTAATTCATCGAGATATTCAATCGATCAGTTGGTGTGTGTTCGTC
TGACCACCTGAAGGATATTGAATGGGACTGGATTTGGTAAATGAATGCAT

consensusID : consensus_375#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 475
fasta sequence

                              [CTCAACCAACCAGATCCCTCGTCATTCCACACTCACCCACACAAACACACGCCTCACGTCAGTCCACCTACGACACAATCAACTTCGTGTGTGTTGCATCACACACAGAAATCTAACACAACACTTCATCCTCACCTCCCTAATCACCCAAACATACACATTCACTCAATACATCCACATGTACACCATTCATTCACACCATCTCACAAATCATCATATCGCTATACACATTAGTCAAATTGAACAACCAACACAACTGTGTCCACCATCAACCCAATCGAAATTCAATTCCATCATTTACTAATTCACGAACACACACACTCACAACCATCAGACACAACTATCCCACACACCGAGTCGCATCAACTCGATCGTCAACTACTCATCCGATGCATACATTTACCAAATCCAGTCCCATTCAATATCCTTCAGGTGGTCAGACGAACACACACCAACTGATCGATTGAATATCTCG]

[-] EMBL CD146464             [CTCAACCAACCAGATCCCTCGTCATTCCACACTCACCCACACAAACACACGCCTCACGTCAGTCCACCTACGACACAATCAACTTCGTGTGTGTTGCATCACACACAGAAATCTAACACAACACTTCATCCTCACCTCCCTAATCACCCAAACATACACATTCACTCAATACATCCACATGTACACCATTCATTCACACCATCTCACAAATCATCATATCGCTATACACATTAGTCAAATTGAACAACCAACACAACTGTGTCCACCATCAACCCAATCGAAATTCAATTCCATCATTTACTAATTCACGAACACACACACTCACAACCATCAGACACAACTATCCCACACACCGAGTCGCATCAACTCGATCGTCAACTACTCATCCGATGCATACATTTACCAAATCCAGTCCCATTCAATATCCTTCAGGTGGTCAGACGAACACACACCAACTGATCGATTGAATATCTCG]




>consensus_375#1
CTCAACCAACCAGATCCCTCGTCATTCCACACTCACCCACACAAACACACGCCTCACGTC
AGTCCACCTACGACACAATCAACTTCGTGTGTGTTGCATCACACACAGAAATCTAACACA
ACACTTCATCCTCACCTCCCTAATCACCCAAACATACACATTCACTCAATACATCCACAT
GTACACCATTCATTCACACCATCTCACAAATCATCATATCGCTATACACATTAGTCAAAT
TGAACAACCAACACAACTGTGTCCACCATCAACCCAATCGAAATTCAATTCCATCATTTA
CTAATTCACGAACACACACACTCACAACCATCAGACACAACTATCCCACACACCGAGTCG
CATCAACTCGATCGTCAACTACTCATCCGATGCATACATTTACCAAATCCAGTCCCATTC
AATATCCTTCAGGTGGTCAGACGAACACACACCAACTGATCGATTGAATATCTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_375#0      ------------------------------------------------------------
consensus_375#1      CTCAACCAACCAGATCCCTCGTCATTCCACACTCACCCACACAAACACACGCCTCACGTC 60
                                                                                 

consensus_375#0      ------------------------------------------------------------
consensus_375#1      AGTCCACCTACGACACAATCAACTTCGTGTGTGTTGCATCACACACAGAAATCTAACACA 120
                                                                                 

consensus_375#0      -------------------------------------ACATTCACTCAATACATCCACAT 23
consensus_375#1      ACACTTCATCCTCACCTCCCTAATCACCCAAACATACACATTCACTCAATACATCCACAT 180
                                                          ***********************

consensus_375#0      GTACACCATTCATTCACACCATCTCACAAATCATCATATCGCTATACACATTAGTCAAAT 83
consensus_375#1      GTACACCATTCATTCACACCATCTCACAAATCATCATATCGCTATACACATTAGTCAAAT 240
                     ************************************************************

consensus_375#0      TGAACAACCAACACAACTGTGTCCACCATCAACCCAATCGAAATTCAATTCCATCATTTA 143
consensus_375#1      TGAACAACCAACACAACTGTGTCCACCATCAACCCAATCGAAATTCAATTCCATCATTTA 300
                     ************************************************************

consensus_375#0      CTAATTCACGAACACACACACTCACAACCATCAGACACAACTATCCCACACACCGAGTCG 203
consensus_375#1      CTAATTCACGAACACACACACTCACAACCATCAGACACAACTATCCCACACACCGAGTCG 360
                     ************************************************************

consensus_375#0      CATCAACTCCATACAGAAATAACTCCACTGATACTACACAACAATCA---TCTGTCCCAC 260
consensus_375#1      CATCAACTCGAT-CGTCAACTACTCATCCGATGC-ATACATTTACCAAATCCAGTCCCAT 418
                     ********* ** *   **  ****  * *** * * ***   * **    * ****** 

consensus_375#0      ACCAATCTCTCTTCAACGACTACACTCATGCGAATGA--TTGTCGTCAGAACATATCCAC 318
consensus_375#1      -TCAATATCCTTCAGGTGGTCAGACGAACACACACCAACTGATCGATTGAATATCTCG-- 475
                       **** **  *     *   * **  *  *  *  *  *  ***   *** ** **   

consensus_375#0      ACTCACCATCAGAGACACACACGCACACGCACATGCACACACTCACATACAAGCACTCAT 378
consensus_375#1      ------------------------------------------------------------
                                                                                 

consensus_375#0      TGTCAGAATCACTTCACCATCAATTCTGTATACAGTCTCAGTGTTTTACAATGGAACACC 438
consensus_375#1      ------------------------------------------------------------
                                                                                 

consensus_375#0      GAGTCAATCAGTGATGTGCCGTACTCTTAATCAATCATCCAATCCTTCACGCATGCATGC 498
consensus_375#1      ------------------------------------------------------------
                                                                                 

consensus_375#0      ATGCATGCATGCATTCATTCATTCATTCATTCATGGATTCATTGATTCACCCTCTCACTA 558
consensus_375#1      ------------------------------------------------------------
                                                                                 

consensus_375#0      ATTCATCGAGATATTCAATCGATCAGTTGGTGTGTGTTCGTCTGACCACCTGAAGGATAT 618
consensus_375#1      ------------------------------------------------------------
                                                                                 

consensus_375#0      TGAATGGGACTGGATTTGGTAAATGAATGCAT 650
consensus_375#1      --------------------------------