cluster # 3752

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Schistosoma mansoni
cluster # 3752 cluster # 3752 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3752#0 length = 501 sequences # 1

consensus_3752#1 length = 291 sequences # 1

consensusID : consensus_3752#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 501
fasta sequence

                              [TATCGGCCAGGAGCAATATGTTATGCAAATTGGAAATAAACCAGGTGAGTTAATAATTAATGTAGCTAAAGAACGATCTGTTGATGTTATATTGATTGGAAATCGTGGTTTAGGCGCATTCAGACGTACATTTTTAGGTTCTGTTAGTGAGTATATATTACATCATTGTAATGTACCATTTATTATTATTCCACCTTCTATTAGTTTATAAAATAATGTAAAGATGTTTATGTGCATGTTTGTTTGTTTGTGCTTCTCCTGCTTCTTCATTTATTTGAACATTATTATATACAGTTACATTTTTACATTCCGCTTGAATTGATGTAAGACAATAATATGAATATAGATTTGTACGTGATCATTGAATATTTTTACAAGATCAAATTTGCACTGTTTACTTGCACCCTTCCTATTGATTGCTCCCATCATTAACTTCACGGAAAGGATCCTCTGGCAGATGATCTTGTTTACTTAAGACGGTAGACACATATTGAAAGTTAA]

[+] EMBL AI977790             [TATCGGCCAGGAGCAATATGTTATGCAAATTGGAAATAAACCAGGTGAGTTAATAATTAATGTAGCTAAAGAACGATCTGTTGATGTTATATTGATTGGAAATCGTGGTTTAGGCGCATTCAGACGTACATTTTTAGGTTCTGTTAGTGAGTATATATTACATCATTGTAATGTACCATTTATTATTATTCCACCTTCTATTAGTTTATAAAATAATGTAAAGATGTTTATGTGCATGTTTGTTTGTTTGTGCTTCTCCTGCTTCTTCATTTATTTGAACATTATTATATACAGTTACATTTTTACATTCCGCTTGAATTGATGTAAGACAATAATATGAATATAGATTTGTACGTGATCATTGAATATTTTTACAAGATCAAATTTGCACTGTTTACTTGCACCCTTCCTATTGATTGCTCCCATCATTAACTTCACGGAAAGGATCCTCTGGCAGATGATCTTGTTTACTTAAGACGGTAGACACATATTGAAAGTTAA]




>consensus_3752#0
TATCGGCCAGGAGCAATATGTTATGCAAATTGGAAATAAACCAGGTGAGTTAATAATTAA
TGTAGCTAAAGAACGATCTGTTGATGTTATATTGATTGGAAATCGTGGTTTAGGCGCATT
CAGACGTACATTTTTAGGTTCTGTTAGTGAGTATATATTACATCATTGTAATGTACCATT
TATTATTATTCCACCTTCTATTAGTTTATAAAATAATGTAAAGATGTTTATGTGCATGTT
TGTTTGTTTGTGCTTCTCCTGCTTCTTCATTTATTTGAACATTATTATATACAGTTACAT
TTTTACATTCCGCTTGAATTGATGTAAGACAATAATATGAATATAGATTTGTACGTGATC
ATTGAATATTTTTACAAGATCAAATTTGCACTGTTTACTTGCACCCTTCCTATTGATTGC
TCCCATCATTAACTTCACGGAAAGGATCCTCTGGCAGATGATCTTGTTTACTTAAGACGG
TAGACACATATTGAAAGTTAA

consensusID : consensus_3752#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 291
fasta sequence

                              [GCTTATTTTNTCCATGTGGTTGAAAGCACATTACTCCAAATCTACCGCAAATGAGTCATATGATCATGGNAAAAGAAATTGNAATACTAATTTGGGATAAAAATATTAAAATGTATTCCAGAAATTAGGTAAAATACTTGGAGACAAATTACATGTATGTATTTGAAAAACAGTAATATTCAAATGGAAATATGTTATGCAAATTGGAAAATAAACCAGGTGAGTTAATAATTAATGGTAGCTAAANAAACGATCTGGTTGAATGTTTATATTGAATTGGAAAATCGTGGG]

[+] EMBL AA559753             [GCTTATTTTNTCCATGTGGTTGAAAGCACATTACTCCAAATCTACCGCAAATGAGTCATATGATCATGGNAAAAGAAATTGNAATACTAATTTGGGATAAAAATATTAAAATGTATTCCAGAAATTAGGTAAAATACTTGGAGACAAATTACATGTATGTATTTGAAAAACAGTAATATTCAAATGGAAATATGTTATGCAAATTGGAAAATAAACCAGGTGAGTTAATAATTAATGGTAGCTAAANAAACGATCTGGTTGAATGTTTATATTGAATTGGAAAATCGTGGG]




>consensus_3752#1
GCTTATTTTNTCCATGTGGTTGAAAGCACATTACTCCAAATCTACCGCAAATGAGTCATA
TGATCATGGNAAAAGAAATTGNAATACTAATTTGGGATAAAAATATTAAAATGTATTCCA
GAAATTAGGTAAAATACTTGGAGACAAATTACATGTATGTATTTGAAAAACAGTAATATT
CAAATGGAAATATGTTATGCAAATTGGAAAATAAACCAGGTGAGTTAATAATTAATGGTA
GCTAAANAAACGATCTGGTTGAATGTTTATATTGAATTGGAAAATCGTGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3752#0      TATCGGCCAGGAGCAATATGTTATGCAAATTGGAAATAAACCAGGTGAGTTAATAATTAA 60
consensus_3752#1      ------------------------------------------------------------
                                                                                  

consensus_3752#0      TGTAGCTAAAGAACGATCTGTTGATGTTATATTGATTGGAAATCGTGGTTTAGGCGCATT 120
consensus_3752#1      ------------------------------------------------------------
                                                                                  

consensus_3752#0      CAGACGTACATTTTTAGGTTCTGTTAGTGAGTATATATTACATCATTGTAATGTACCATT 180
consensus_3752#1      -------GCTTATTTTNTCCATGTGGTTGAAAGCACATTACTCCA----AATCTACCGCA 49
                              * * ***      ***   ***    * *****  **    *** ****   

consensus_3752#0      TATTATTATTCCACCTTCTATTAGTTTATAAAATAATGTAAAGATGTTTATGTGCATGTT 240
consensus_3752#1      AATGAGT------CATATGATCATGGNAAAAGAAATTGNAATACTAATTTGGGATAAAAA 103
                       ** * *      * *   ** *    * ** * * ** **   *  **  *   *    

consensus_3752#0      TGTTTGTTTGTGCTTCTCCTGCTTCTTCATTTATTTGAACATTATTATATACAGTTACAT 300
consensus_3752#1      TATTAAAATGTATTCCAGAAATTAGGTAAAATACTTGGAGACAAAT---TACATGTATGT 160
                      * **    ***  * *      *   * *  ** *** * *  * *   ****  **  *

consensus_3752#0      TTTTACATTCCGCTTGAATTGATGTAAGACAATAATATGAATATAG--ATTTGTACGTGA 358
consensus_3752#1      ATTTGAAAAACAGTAATATTCAAATGGAAATATGTTATGCAAATTGGAAAATAAACCAGG 220
                       ***  *   *  *   *** *  *   *  **  **** * ** *  *  *  **  * 

consensus_3752#0      TCATTGAATATTTTTACAAGATCAAATTTGCACTGTTTACTTGCACCCTTCCTATTGATT 418
consensus_3752#1      TGAGTTAATAATTAATGGTAGCTAAA--NAAACGATCTGGTTG-AATGTTTATATTGAAT 277
                      * * * **** **          ***     **  * *  *** *   **  ****** *

consensus_3752#0      GCTCCCATCATTAACTTCACGGAAAGGATCCTCTGGCAGATGATCTTGTTTACTTAAGAC 478
consensus_3752#1      TGGAAAATCGTGGG---------------------------------------------- 291
                            *** *                                                 

consensus_3752#0      GGTAGACACATATTGAAAGTTAA 501
consensus_3752#1      -----------------------