cluster # 3771

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Schistosoma mansoni
cluster # 3771 cluster # 3771 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3771#0 length = 430 sequences # 1

consensus_3771#1 length = 387 sequences # 1

consensusID : consensus_3771#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 430
fasta sequence

                              [AAGGTGTTTTGGGATAAAACAAAACACTTGAATCAAATAGGTAATAATAATCTTTTCAGTTGGCAGGGAACTAGGGCCCGTTAATCAACTTCTTAATAATTATTCATTGCCATATTTTTGACCCCCCTGTTTTTTTAACCAACCACTCATCCAGTCTTGACTTTAAGGTCTAATCCAGAAGGCAGTGTGGCAACTTCAAAATGTCCCCCTATGGTACCCAGTGACCAACAATAATTCCATACTCCTTTTGATTCTTTGGGATCCTGCACCCTAAATCCCCCATTGGTTTAAAATCAGGATTTTCCAACTCCTTTAGGGGGGTCATCCGTGCCCACTAACCCATTTTACCCCCCGGACATTCGGTTTTCATTCTGGTTTTTGCAAACAACAACCCACCAAAAAACAATCAGTTGGATTCCCTTGACAGGGG]

[+] EMBL CD073344             [AAGGTGTTTTGGGATAAAACAAAACACTTGAATCAAATAGGTAATAATAATCTTTTCAGTTGGCAGGGAACTAGGGCCCGTTAATCAACTTCTTAATAATTATTCATTGCCATATTTTTGACCCCCCTGTTTTTTTAACCAACCACTCATCCAGTCTTGACTTTAAGGTCTAATCCAGAAGGCAGTGTGGCAACTTCAAAATGTCCCCCTATGGTACCCAGTGACCAACAATAATTCCATACTCCTTTTGATTCTTTGGGATCCTGCACCCTAAATCCCCCATTGGTTTAAAATCAGGATTTTCCAACTCCTTTAGGGGGGTCATCCGTGCCCACTAACCCATTTTACCCCCCGGACATTCGGTTTTCATTCTGGTTTTTGCAAACAACAACCCACCAAAAAACAATCAGTTGGATTCCCTTGACAGGGG]




>consensus_3771#0
AAGGTGTTTTGGGATAAAACAAAACACTTGAATCAAATAGGTAATAATAATCTTTTCAGT
TGGCAGGGAACTAGGGCCCGTTAATCAACTTCTTAATAATTATTCATTGCCATATTTTTG
ACCCCCCTGTTTTTTTAACCAACCACTCATCCAGTCTTGACTTTAAGGTCTAATCCAGAA
GGCAGTGTGGCAACTTCAAAATGTCCCCCTATGGTACCCAGTGACCAACAATAATTCCAT
ACTCCTTTTGATTCTTTGGGATCCTGCACCCTAAATCCCCCATTGGTTTAAAATCAGGAT
TTTCCAACTCCTTTAGGGGGGTCATCCGTGCCCACTAACCCATTTTACCCCCCGGACATT
CGGTTTTCATTCTGGTTTTTGCAAACAACAACCCACCAAAAAACAATCAGTTGGATTCCC
TTGACAGGGG

consensusID : consensus_3771#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 387
fasta sequence

                              [GATTCAAGTGTTTTGTTTTATCCCAATACACCTTTGCATTGGATTTTGTTTGCAACCTATGCTTGTTATTGTTTTGCACAGGCGCTCGTCTACGGTAGAAATTTATCCTGTCTAAACGAACTGAAGTCACTGGCTAGTTGAAAGTTTGAGTGGTGTGGCCGAATACAAATTCTGAACCGGCATTTCTGAAACCTCGTGTGTCATTGAAGCTTTCCTCCTTCAAGAGTCGCACACTAATACAGATGGGAGAGTAGATGGGATCTGTTGTGTTGCTTCTTTGGAGAGTTTTGACGTCGACGTCTGTTGATTATGAGAGACTACTGGTATTAGAAGCTGTAGTGAAGTGGTACGTATTCACCCTCCACATCTATTGGAAGAGGTTGTCTC]

[+] EMBL CD093459             [GATTCAAGTGTTTTGTTTTATCCCAATACACCTTTGCATTGGATTTTGTTTGCAACCTATGCTTGTTATTGTTTTGCACAGGCGCTCGTCTACGGTAGAAATTTATCCTGTCTAAACGAACTGAAGTCACTGGCTAGTTGAAAGTTTGAGTGGTGTGGCCGAATACAAATTCTGAACCGGCATTTCTGAAACCTCGTGTGTCATTGAAGCTTTCCTCCTTCAAGAGTCGCACACTAATACAGATGGGAGAGTAGATGGGATCTGTTGTGTTGCTTCTTTGGAGAGTTTTGACGTCGACGTCTGTTGATTATGAGAGACTACTGGTATTAGAAGCTGTAGTGAAGTGGTACGTATTCACCCTCCACATCTATTGGAAGAGGTTGTCTC]




>consensus_3771#1
GATTCAAGTGTTTTGTTTTATCCCAATACACCTTTGCATTGGATTTTGTTTGCAACCTAT
GCTTGTTATTGTTTTGCACAGGCGCTCGTCTACGGTAGAAATTTATCCTGTCTAAACGAA
CTGAAGTCACTGGCTAGTTGAAAGTTTGAGTGGTGTGGCCGAATACAAATTCTGAACCGG
CATTTCTGAAACCTCGTGTGTCATTGAAGCTTTCCTCCTTCAAGAGTCGCACACTAATAC
AGATGGGAGAGTAGATGGGATCTGTTGTGTTGCTTCTTTGGAGAGTTTTGACGTCGACGT
CTGTTGATTATGAGAGACTACTGGTATTAGAAGCTGTAGTGAAGTGGTACGTATTCACCC
TCCACATCTATTGGAAGAGGTTGTCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3771#0      AAGGTGTTTTGGGATAAAACAAAACACTTGAATCAAATAGGTAATAATAATCTTTTCAGT 60
consensus_3771#1      -----------GATTCAAGTGTTTTGTTTTATCCCAATACACCTTTGCATTGGATTTTGT 49
                                 *  * **         ** *  * ****     *   * *   **  **

consensus_3771#0      TGGCAGGGAACTAGGGCCCGTTAATCAACTTCTTAATAATTATTCATTGCCATATTTTTG 120
consensus_3771#1      TTGCA----ACCTATGCTTGTTATTG---TTTTGCACAGGCGCTCGTC----TACGGTAG 98
                      * ***    **    **  **** *    ** *  * *     ** *     **   * *

consensus_3771#0      ACCCCCCTGTTTTTTTAACCAACCACTCATCCAGTCTTGACTTTAAGGTCTAATCCAGAA 180
consensus_3771#1      AAATTTATCCTGTCTAAACGAACTG--AAGTCACTGGCTAGTTGAAAGTTTGAGTGGTGT 156
                      *      *  * * * *** ***     *  ** *    * ** ** ** * *       

consensus_3771#0      GGCAGTGTGGCAACTTCAAAATGTCCCCCTATGGTACCCAGTGACCAACAATAATTCCAT 240
consensus_3771#1      GGCCGAATA-CAAATTCTGAACCGGCATTTCTGAAACCTCGTG--TGTCATTGAAGCTTT 213
                      *** *  *  *** ***  **    *   * **  ***  ***     ** * *  *  *

consensus_3771#0      ACTCCTTTTGATTCTTTGGGATCCTGCACCCTAAATCCCCCATTGGTTTAAAATCAGGAT 300
consensus_3771#1      CCTCCTTCAAGAGTCGCACACTAATACAGATGGGAGAGTAGATGGG------ATCTG--T 265
                       ******              *  * **      *      ** **      *** *  *

consensus_3771#0      TTTCCAACTCCTTTAGGGGGGT----CATCCGTGCCCACTAACCCATTTTACCCCCCGGA 356
consensus_3771#1      TGTGTTGCTTCTTTGGAGAGTTTTGACGTCGACGTCTGTTGATT-ATGAGAGACTACTGG 324
                      * *    ** **** * * * *    * **   * *   * *   **   *  *  * * 

consensus_3771#0      CATTCGGTTTTCATTCTGGTTTTTGCAAACAACAACCCACCAAAAAACAATCAGTTGGAT 416
consensus_3771#1      TATTAGAAGCT-GTAGTGAAGTG-GTACGTATTCACCCTCCACATC-TATTGGAAGAGGT 381
                       *** *    *  *  **   *  * *   *   **** *** *    * *      * *

consensus_3771#0      TCCCTTGACAGGGG 430
consensus_3771#1      TGTCTC-------- 387
                      *  **