These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3781#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence [GAATTTGCTAGTCGAATTGAATCAGTTTCTGATTTTAAACTGTGGTTTGCACTGTCATATGCTTCATCAGTATGGTTATATTTCGTAGCAGCTGGTAATATTCCTACATAATTATCTCTAGTACATTTCATATCTGCTTTATATCTACGGCAAGGTTGGGTGGATAAGTGATCGTTATTATATTCTATATTTTGATCGTAGTCTGTATCAGAGCAATCATCTTGATCCATTATTTCTGCGACATTGTGACTACCTAACATTGCTCTCCTTCGTTGAATAGCCGGTAGCACCGCTTCGTCTGGATTAAAAATCAAGTCCGTTGATGGTTTTCCAGCTCTTGGCATTTGTAAGACTTCTCTAT] [+] EMBL CD190701 [GAATTTGCTAGTCGAATTGAATCAGTTTCTGATTTTAAACTGTGGTTTGCACTGTCATATGCTTCATCAGTATGGTTATATTTCGTAGCAGCTGGTAATATTCCTACATAATTATCTCTAGTACATTTCATATCTGCTTTATATCTACGGCAAGGTTGGGTGGATAAGTGATCGTTATTATATTCTATATTTTGATCGTAGTCTGTATCAGAGCAATCATCTTGATCCATTATTTCTGCGACATTGTGACTACCTAACATTGCTCTCCTTCGTTGAATAGCCGGTAGCACCGCTTCGTCTGGATTAAAAATCAAGTCCGTTGATGGTTTTCCAGCTCTTGGCATTTGTAAGACTTCTCTAT] consensusID : consensus_3781#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 178 fasta sequence [GTACTACGTAAAAAAGCTGATGCCTATCGGAAACGCGATCGAGAATCGCACTTTTCACGTGAGCATTTATCACAACTGGAATCTGACTATGATGATCATTGGGATCCCCCAAGTGATGATGATTATATGGAAAATCTAGAAAAATATACAGAAGTCTTACAAATGCCAAGAGCTGGAA] [+] EMBL CD152505 [GTACTACGTAAAAAAGCTGATGCCTATCGGAAACGCGATCGAGAATCGCACTTTTCACGTGAGCATTTATCACAACTGGAATCTGACTATGATGATCATTGGGATCCCCCAAGTGATGATGATTATATGGAAAATCTAGAAAAATATACAGAAGTCTTACAAATGCCAAGAGCTGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3781#0 GAATTTGCTAGTCGAATTGAATCAGTTTCTGATTTTAAACTGTGGTTTGCACTGTCATAT 60 consensus_3781#1 ----------------------------------------------------------GT 2 * consensus_3781#0 GCTTCATCAGTATGGTTATATTTCGTAGCAGCTGGTAATATTCCTACATAATTATCTCTA 120 consensus_3781#1 ACTACGTAAAAAAGCTGATGCCTATCGGAAACGCGATCGAGAATCGCACTTTTCACGTGA 62 ** * * * * * * ** * * * * * * ** ** * * consensus_3781#0 GTACATTTCATATCTGCTTTATATCTACGGCAAG-GTTGGG--TGGATAAGTGATCGTTA 177 consensus_3781#1 GCATTTATCACAACTGGAATCTGACTATGATGATCATTGGGATCCCCCAAGTGATGATGA 122 * * * *** * *** * * *** * * ***** ******* * * consensus_3781#0 TTATATTCTATATTTTGATCG-TAGTCTGTATCAGAGCAATCATCTTGATCCATTATTTC 236 consensus_3781#1 TTATATGGAAAATCTAGAAAAATATACAGAAGTCTTACAAATGCCAAGAGCTGGAA---- 178 ****** * ** * ** ** * * * *** * ** * * consensus_3781#0 TGCGACATTGTGACTACCTAACATTGCTCTCCTTCGTTGAATAGCCGGTAGCACCGCTTC 296 consensus_3781#1 ------------------------------------------------------------ consensus_3781#0 GTCTGGATTAAAAATCAAGTCCGTTGATGGTTTTCCAGCTCTTGGCATTTGTAAGACTTC 356 consensus_3781#1 ------------------------------------------------------------ consensus_3781#0 TCTAT 361 consensus_3781#1 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||