cluster # 3781

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Schistosoma mansoni
cluster # 3781 cluster # 3781 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3781#0 length = 361 sequences # 1

consensus_3781#1 length = 178 sequences # 1

consensusID : consensus_3781#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 361
fasta sequence

                              [GAATTTGCTAGTCGAATTGAATCAGTTTCTGATTTTAAACTGTGGTTTGCACTGTCATATGCTTCATCAGTATGGTTATATTTCGTAGCAGCTGGTAATATTCCTACATAATTATCTCTAGTACATTTCATATCTGCTTTATATCTACGGCAAGGTTGGGTGGATAAGTGATCGTTATTATATTCTATATTTTGATCGTAGTCTGTATCAGAGCAATCATCTTGATCCATTATTTCTGCGACATTGTGACTACCTAACATTGCTCTCCTTCGTTGAATAGCCGGTAGCACCGCTTCGTCTGGATTAAAAATCAAGTCCGTTGATGGTTTTCCAGCTCTTGGCATTTGTAAGACTTCTCTAT]

[+] EMBL CD190701             [GAATTTGCTAGTCGAATTGAATCAGTTTCTGATTTTAAACTGTGGTTTGCACTGTCATATGCTTCATCAGTATGGTTATATTTCGTAGCAGCTGGTAATATTCCTACATAATTATCTCTAGTACATTTCATATCTGCTTTATATCTACGGCAAGGTTGGGTGGATAAGTGATCGTTATTATATTCTATATTTTGATCGTAGTCTGTATCAGAGCAATCATCTTGATCCATTATTTCTGCGACATTGTGACTACCTAACATTGCTCTCCTTCGTTGAATAGCCGGTAGCACCGCTTCGTCTGGATTAAAAATCAAGTCCGTTGATGGTTTTCCAGCTCTTGGCATTTGTAAGACTTCTCTAT]




>consensus_3781#0
GAATTTGCTAGTCGAATTGAATCAGTTTCTGATTTTAAACTGTGGTTTGCACTGTCATAT
GCTTCATCAGTATGGTTATATTTCGTAGCAGCTGGTAATATTCCTACATAATTATCTCTA
GTACATTTCATATCTGCTTTATATCTACGGCAAGGTTGGGTGGATAAGTGATCGTTATTA
TATTCTATATTTTGATCGTAGTCTGTATCAGAGCAATCATCTTGATCCATTATTTCTGCG
ACATTGTGACTACCTAACATTGCTCTCCTTCGTTGAATAGCCGGTAGCACCGCTTCGTCT
GGATTAAAAATCAAGTCCGTTGATGGTTTTCCAGCTCTTGGCATTTGTAAGACTTCTCTA
T

consensusID : consensus_3781#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 178
fasta sequence

                              [GTACTACGTAAAAAAGCTGATGCCTATCGGAAACGCGATCGAGAATCGCACTTTTCACGTGAGCATTTATCACAACTGGAATCTGACTATGATGATCATTGGGATCCCCCAAGTGATGATGATTATATGGAAAATCTAGAAAAATATACAGAAGTCTTACAAATGCCAAGAGCTGGAA]

[+] EMBL CD152505             [GTACTACGTAAAAAAGCTGATGCCTATCGGAAACGCGATCGAGAATCGCACTTTTCACGTGAGCATTTATCACAACTGGAATCTGACTATGATGATCATTGGGATCCCCCAAGTGATGATGATTATATGGAAAATCTAGAAAAATATACAGAAGTCTTACAAATGCCAAGAGCTGGAA]




>consensus_3781#1
GTACTACGTAAAAAAGCTGATGCCTATCGGAAACGCGATCGAGAATCGCACTTTTCACGT
GAGCATTTATCACAACTGGAATCTGACTATGATGATCATTGGGATCCCCCAAGTGATGAT
GATTATATGGAAAATCTAGAAAAATATACAGAAGTCTTACAAATGCCAAGAGCTGGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3781#0      GAATTTGCTAGTCGAATTGAATCAGTTTCTGATTTTAAACTGTGGTTTGCACTGTCATAT 60
consensus_3781#1      ----------------------------------------------------------GT 2
                                                                                 *

consensus_3781#0      GCTTCATCAGTATGGTTATATTTCGTAGCAGCTGGTAATATTCCTACATAATTATCTCTA 120
consensus_3781#1      ACTACGTAAAAAAGCTGATGCCTATCGGAAACGCGATCGAGAATCGCACTTTTCACGTGA 62
                       ** * * *  * * * **   *    * * *  *    *      **   **  *   *

consensus_3781#0      GTACATTTCATATCTGCTTTATATCTACGGCAAG-GTTGGG--TGGATAAGTGATCGTTA 177
consensus_3781#1      GCATTTATCACAACTGGAATCTGACTATGATGATCATTGGGATCCCCCAAGTGATGATGA 122
                      * *  * *** * ***   * *  *** *   *   *****       *******  * *

consensus_3781#0      TTATATTCTATATTTTGATCG-TAGTCTGTATCAGAGCAATCATCTTGATCCATTATTTC 236
consensus_3781#1      TTATATGGAAAATCTAGAAAAATATACAGAAGTCTTACAAATGCCAAGAGCTGGAA---- 178
                      ******   * ** * **    **  * * *      ***    *  ** *    *    

consensus_3781#0      TGCGACATTGTGACTACCTAACATTGCTCTCCTTCGTTGAATAGCCGGTAGCACCGCTTC 296
consensus_3781#1      ------------------------------------------------------------
                                                                                  

consensus_3781#0      GTCTGGATTAAAAATCAAGTCCGTTGATGGTTTTCCAGCTCTTGGCATTTGTAAGACTTC 356
consensus_3781#1      ------------------------------------------------------------
                                                                                  

consensus_3781#0      TCTAT 361
consensus_3781#1      -----