cluster # 3791

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Schistosoma mansoni
cluster # 3791 cluster # 3791 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3791#0 length = 536 sequences # 1

consensus_3791#1 length = 200 sequences # 1

consensusID : consensus_3791#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 536
fasta sequence

                              [AGCTGATATTTTTCTAGTCAAACTAGAGAATGGTCCACTAAAAAAAGATTATTCAAAAATTCAAATTTTACTGTAGATATATAGATGACACATTCATTCCGTGTAAAGATAATATATCACAGCAAGACGTTCTCAGTCAGTTTAATGAAGTGTATCCAGCCCTTCAGTTTACATCATCAGAAGCGAGTGATGGTTGAATGGCTTTTTTGGACCTTATCTTAACTAAGAGAGCGGATGAATCGTTAAAAAGAAACGTAAACAAAAAAGACTTGGACTGGGAAGTATACACATTCTCTTTAGCTTTGTACCTCTACAGTAAAAACGAAATATGACCAAAACCCTTAGTTACAGAATACGCGCTATATGTTCTAAGGATATAGTTGAAGATGAGCTAAACACCTTGCATAATGCTCTTAGGGTGAACGGTTACCTAGAAAGTTTATAATTAAATATTTGTTCACGAAAGTGAAAATAGGTGAAATCCAAACGGTCAAGAAGAAATCCCTGTTCATGCACCTACAATTCAGAGGGGATGC]

[+] EMBL CD185680             [AGCTGATATTTTTCTAGTCAAACTAGAGAATGGTCCACTAAAAAAAGATTATTCAAAAATTCAAATTTTACTGTAGATATATAGATGACACATTCATTCCGTGTAAAGATAATATATCACAGCAAGACGTTCTCAGTCAGTTTAATGAAGTGTATCCAGCCCTTCAGTTTACATCATCAGAAGCGAGTGATGGTTGAATGGCTTTTTTGGACCTTATCTTAACTAAGAGAGCGGATGAATCGTTAAAAAGAAACGTAAACAAAAAAGACTTGGACTGGGAAGTATACACATTCTCTTTAGCTTTGTACCTCTACAGTAAAAACGAAATATGACCAAAACCCTTAGTTACAGAATACGCGCTATATGTTCTAAGGATATAGTTGAAGATGAGCTAAACACCTTGCATAATGCTCTTAGGGTGAACGGTTACCTAGAAAGTTTATAATTAAATATTTGTTCACGAAAGTGAAAATAGGTGAAATCCAAACGGTCAAGAAGAAATCCCTGTTCATGCACCTACAATTCAGAGGGGATGC]




>consensus_3791#0
AGCTGATATTTTTCTAGTCAAACTAGAGAATGGTCCACTAAAAAAAGATTATTCAAAAAT
TCAAATTTTACTGTAGATATATAGATGACACATTCATTCCGTGTAAAGATAATATATCAC
AGCAAGACGTTCTCAGTCAGTTTAATGAAGTGTATCCAGCCCTTCAGTTTACATCATCAG
AAGCGAGTGATGGTTGAATGGCTTTTTTGGACCTTATCTTAACTAAGAGAGCGGATGAAT
CGTTAAAAAGAAACGTAAACAAAAAAGACTTGGACTGGGAAGTATACACATTCTCTTTAG
CTTTGTACCTCTACAGTAAAAACGAAATATGACCAAAACCCTTAGTTACAGAATACGCGC
TATATGTTCTAAGGATATAGTTGAAGATGAGCTAAACACCTTGCATAATGCTCTTAGGGT
GAACGGTTACCTAGAAAGTTTATAATTAAATATTTGTTCACGAAAGTGAAAATAGGTGAA
ATCCAAACGGTCAAGAAGAAATCCCTGTTCATGCACCTACAATTCAGAGGGGATGC

consensusID : consensus_3791#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 200
fasta sequence

                              [AAACCTGATCAAAACCCTTAGCTACCGAATACGCACTATATGTTCGGCAGATATAGTTGAAGATGAGCTAAACACCTTGCATAATGCTCTGAGGGAGAATGATTCCTCCAGAAAGTTTGTAATTAAATACATGATCACGAAAGTGAAAATAGGCTAAATTCAAACGGTCAGAAAGAGGTCCCTGTTCATACGCCTACAAT]

[-] EMBL CD119973             [AAACCTGATCAAAACCCTTAGCTACCGAATACGCACTATATGTTCGGCAGATATAGTTGAAGATGAGCTAAACACCTTGCATAATGCTCTGAGGGAGAATGATTCCTCCAGAAAGTTTGTAATTAAATACATGATCACGAAAGTGAAAATAGGCTAAATTCAAACGGTCAGAAAGAGGTCCCTGTTCATACGCCTACAAT]




>consensus_3791#1
AAACCTGATCAAAACCCTTAGCTACCGAATACGCACTATATGTTCGGCAGATATAGTTGA
AGATGAGCTAAACACCTTGCATAATGCTCTGAGGGAGAATGATTCCTCCAGAAAGTTTGT
AATTAAATACATGATCACGAAAGTGAAAATAGGCTAAATTCAAACGGTCAGAAAGAGGTC
CCTGTTCATACGCCTACAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3791#0      AGCTGATATTTTTCTAGTCAAACTAGAGAATGGTCCACTAAAAAAAGATTATTCAAAAAT 60
consensus_3791#1      ------------------------------------------------------------
                                                                                  

consensus_3791#0      TCAAATTTTACTGTAGATATATAGATGACACATTCATTCCGTGTAAAGATAATATATCAC 120
consensus_3791#1      ------------------------------------------------------------
                                                                                  

consensus_3791#0      AGCAAGACGTTCTCAGTCAGTTTAATGAAGTGTATCCAGCCCTTCAGTTTACATCATCAG 180
consensus_3791#1      ------------------------------------------------------------
                                                                                  

consensus_3791#0      AAGCGAGTGATGGTTGAATGGCTTTTTTGGACCTTATCTTAACTAAGAGAGCGGATGAAT 240
consensus_3791#1      ------------------------------------------------------------
                                                                                  

consensus_3791#0      CGTTAAAAAGAAACGTAAACAAAAAAGACTTGGACTGGGAAGTATACACATTCTCTTTAG 300
consensus_3791#1      ------------------------------------------------------------
                                                                                  

consensus_3791#0      CTTTGTACCTCTACAGTAAAAACGAAATATGACCAAAACCCTTAGTTACAGAATACGCGC 360
consensus_3791#1      ------------------------AAACCTGATCAAAACCCTTAGCTACCGAATACGCAC 36
                                              ***  *** ************ *** ******** *

consensus_3791#0      TATATGTTCTAAGGATATAGTTGAAGATGAGCTAAACACCTTGCATAATGCTCTTAGGGT 420
consensus_3791#1      TATATGTTCGGCAGATATAGTTGAAGATGAGCTAAACACCTTGCATAATGCTCTGAGGGA 96
                      *********    ***************************************** **** 

consensus_3791#0      GAACGGTTAC-CTAGAAAGTTTATAATTAAATATTTGTTCACGAAAGTGAAAATAGGTGA 479
consensus_3791#1      GAATGATTCCTCCAGAAAGTTTGTAATTAAATACATGATCACGAAAGTGAAAATAGGCTA 156
                      *** * ** * * ********* **********  ** *******************  *

consensus_3791#0      AATCCAAACGGTCAAGAAGAAATCCCTGTTCATGCACCTACAATTCAGAGGGGATGC 536
consensus_3791#1      AATTCAAACGGTCAGAAAGAGGTCCCTGTTCATACGCCTACAAT------------- 200
                      *** **********  ****  *********** * ********