These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3791#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence [AGCTGATATTTTTCTAGTCAAACTAGAGAATGGTCCACTAAAAAAAGATTATTCAAAAATTCAAATTTTACTGTAGATATATAGATGACACATTCATTCCGTGTAAAGATAATATATCACAGCAAGACGTTCTCAGTCAGTTTAATGAAGTGTATCCAGCCCTTCAGTTTACATCATCAGAAGCGAGTGATGGTTGAATGGCTTTTTTGGACCTTATCTTAACTAAGAGAGCGGATGAATCGTTAAAAAGAAACGTAAACAAAAAAGACTTGGACTGGGAAGTATACACATTCTCTTTAGCTTTGTACCTCTACAGTAAAAACGAAATATGACCAAAACCCTTAGTTACAGAATACGCGCTATATGTTCTAAGGATATAGTTGAAGATGAGCTAAACACCTTGCATAATGCTCTTAGGGTGAACGGTTACCTAGAAAGTTTATAATTAAATATTTGTTCACGAAAGTGAAAATAGGTGAAATCCAAACGGTCAAGAAGAAATCCCTGTTCATGCACCTACAATTCAGAGGGGATGC] [+] EMBL CD185680 [AGCTGATATTTTTCTAGTCAAACTAGAGAATGGTCCACTAAAAAAAGATTATTCAAAAATTCAAATTTTACTGTAGATATATAGATGACACATTCATTCCGTGTAAAGATAATATATCACAGCAAGACGTTCTCAGTCAGTTTAATGAAGTGTATCCAGCCCTTCAGTTTACATCATCAGAAGCGAGTGATGGTTGAATGGCTTTTTTGGACCTTATCTTAACTAAGAGAGCGGATGAATCGTTAAAAAGAAACGTAAACAAAAAAGACTTGGACTGGGAAGTATACACATTCTCTTTAGCTTTGTACCTCTACAGTAAAAACGAAATATGACCAAAACCCTTAGTTACAGAATACGCGCTATATGTTCTAAGGATATAGTTGAAGATGAGCTAAACACCTTGCATAATGCTCTTAGGGTGAACGGTTACCTAGAAAGTTTATAATTAAATATTTGTTCACGAAAGTGAAAATAGGTGAAATCCAAACGGTCAAGAAGAAATCCCTGTTCATGCACCTACAATTCAGAGGGGATGC] consensusID : consensus_3791#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 200 fasta sequence [AAACCTGATCAAAACCCTTAGCTACCGAATACGCACTATATGTTCGGCAGATATAGTTGAAGATGAGCTAAACACCTTGCATAATGCTCTGAGGGAGAATGATTCCTCCAGAAAGTTTGTAATTAAATACATGATCACGAAAGTGAAAATAGGCTAAATTCAAACGGTCAGAAAGAGGTCCCTGTTCATACGCCTACAAT] [-] EMBL CD119973 [AAACCTGATCAAAACCCTTAGCTACCGAATACGCACTATATGTTCGGCAGATATAGTTGAAGATGAGCTAAACACCTTGCATAATGCTCTGAGGGAGAATGATTCCTCCAGAAAGTTTGTAATTAAATACATGATCACGAAAGTGAAAATAGGCTAAATTCAAACGGTCAGAAAGAGGTCCCTGTTCATACGCCTACAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3791#0 AGCTGATATTTTTCTAGTCAAACTAGAGAATGGTCCACTAAAAAAAGATTATTCAAAAAT 60 consensus_3791#1 ------------------------------------------------------------ consensus_3791#0 TCAAATTTTACTGTAGATATATAGATGACACATTCATTCCGTGTAAAGATAATATATCAC 120 consensus_3791#1 ------------------------------------------------------------ consensus_3791#0 AGCAAGACGTTCTCAGTCAGTTTAATGAAGTGTATCCAGCCCTTCAGTTTACATCATCAG 180 consensus_3791#1 ------------------------------------------------------------ consensus_3791#0 AAGCGAGTGATGGTTGAATGGCTTTTTTGGACCTTATCTTAACTAAGAGAGCGGATGAAT 240 consensus_3791#1 ------------------------------------------------------------ consensus_3791#0 CGTTAAAAAGAAACGTAAACAAAAAAGACTTGGACTGGGAAGTATACACATTCTCTTTAG 300 consensus_3791#1 ------------------------------------------------------------ consensus_3791#0 CTTTGTACCTCTACAGTAAAAACGAAATATGACCAAAACCCTTAGTTACAGAATACGCGC 360 consensus_3791#1 ------------------------AAACCTGATCAAAACCCTTAGCTACCGAATACGCAC 36 *** *** ************ *** ******** * consensus_3791#0 TATATGTTCTAAGGATATAGTTGAAGATGAGCTAAACACCTTGCATAATGCTCTTAGGGT 420 consensus_3791#1 TATATGTTCGGCAGATATAGTTGAAGATGAGCTAAACACCTTGCATAATGCTCTGAGGGA 96 ********* ***************************************** **** consensus_3791#0 GAACGGTTAC-CTAGAAAGTTTATAATTAAATATTTGTTCACGAAAGTGAAAATAGGTGA 479 consensus_3791#1 GAATGATTCCTCCAGAAAGTTTGTAATTAAATACATGATCACGAAAGTGAAAATAGGCTA 156 *** * ** * * ********* ********** ** ******************* * consensus_3791#0 AATCCAAACGGTCAAGAAGAAATCCCTGTTCATGCACCTACAATTCAGAGGGGATGC 536 consensus_3791#1 AATTCAAACGGTCAGAAAGAGGTCCCTGTTCATACGCCTACAAT------------- 200 *** ********** **** *********** * ******** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||