cluster # 380

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Schistosoma mansoni
cluster # 380 cluster # 380 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_380#0 length = 609 sequences # 1

consensus_380#1 length = 378 sequences # 1

consensusID : consensus_380#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 609
fasta sequence

                              [ACGTTTATTATGAAATAATAGTTTTATTAATTACAAGTGATCAAAGAATACTGGGATAAGAATTCTGTATACATGATAGATTCTTTTTTTGAAGAAAAATAACTTTTATGAAAATAATATATAAATTAGAATGATAAGGTAATTAGCAGTTATTTAAAGAAAATAATAATAATAATTCAATATTTGGGTATTTCGGTTGATTAAGGTTCAGTATATTGTTTGTTGGTGTTGTTGATTGGATACTTGATAACTAGGTTTTAGATAGATGAATTGGAGTATATAATGTTACTGATGCTATACATTCACTACTTGGAATAATCTACATATATATGTAGAAAAAAAATTCATAAGATGATAATTATTTAATGAGTATCAAAGAAAATATATAATATCTGAATTTACAGTGATGAAAGGCAAACATTCTCAAGTACAGATCTATATAGTCGGTCTCAAATTCTACTGTGTGTAACACTGTTGTATCCCGTGGAGAATTATGAATGGTAACTTTGAGGACTATTTATGGACCAATATGATATGTTATATTTCCTATTGTATAATTGTTAAGTAACTAAACTATTCGTATTCGTCTCCCTCTTATCATAGGCTTTA]

[+] EMBL CD073301             [ACGTTTATTATGAAATAATAGTTTTATTAATTACAAGTGATCAAAGAATACTGGGATAAGAATTCTGTATACATGATAGATTCTTTTTTTGAAGAAAAATAACTTTTATGAAAATAATATATAAATTAGAATGATAAGGTAATTAGCAGTTATTTAAAGAAAATAATAATAATAATTCAATATTTGGGTATTTCGGTTGATTAAGGTTCAGTATATTGTTTGTTGGTGTTGTTGATTGGATACTTGATAACTAGGTTTTAGATAGATGAATTGGAGTATATAATGTTACTGATGCTATACATTCACTACTTGGAATAATCTACATATATATGTAGAAAAAAAATTCATAAGATGATAATTATTTAATGAGTATCAAAGAAAATATATAATATCTGAATTTACAGTGATGAAAGGCAAACATTCTCAAGTACAGATCTATATAGTCGGTCTCAAATTCTACTGTGTGTAACACTGTTGTATCCCGTGGAGAATTATGAATGGTAACTTTGAGGACTATTTATGGACCAATATGATATGTTATATTTCCTATTGTATAATTGTTAAGTAACTAAACTATTCGTATTCGTCTCCCTCTTATCATAGGCTTTA]




>consensus_380#0
ACGTTTATTATGAAATAATAGTTTTATTAATTACAAGTGATCAAAGAATACTGGGATAAG
AATTCTGTATACATGATAGATTCTTTTTTTGAAGAAAAATAACTTTTATGAAAATAATAT
ATAAATTAGAATGATAAGGTAATTAGCAGTTATTTAAAGAAAATAATAATAATAATTCAA
TATTTGGGTATTTCGGTTGATTAAGGTTCAGTATATTGTTTGTTGGTGTTGTTGATTGGA
TACTTGATAACTAGGTTTTAGATAGATGAATTGGAGTATATAATGTTACTGATGCTATAC
ATTCACTACTTGGAATAATCTACATATATATGTAGAAAAAAAATTCATAAGATGATAATT
ATTTAATGAGTATCAAAGAAAATATATAATATCTGAATTTACAGTGATGAAAGGCAAACA
TTCTCAAGTACAGATCTATATAGTCGGTCTCAAATTCTACTGTGTGTAACACTGTTGTAT
CCCGTGGAGAATTATGAATGGTAACTTTGAGGACTATTTATGGACCAATATGATATGTTA
TATTTCCTATTGTATAATTGTTAAGTAACTAAACTATTCGTATTCGTCTCCCTCTTATCA
TAGGCTTTA

consensusID : consensus_380#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 378
fasta sequence

                              [TTTTTTTTTTTTTTTTGTATCGGAATACTGTTTTCAGCACTTCATTTTATAATTACACAATTCCATACTTCCTTCTGAACTACCTTCATTTATACAGTTCCTTGTCCACTCATACCTTGCCCGCACTTATTTTTCTTTAACACATTAGGATGTTCTTACCTGATAAATACTTAACTATTCCTCCATGAATATTGTGTGCTCTGCTTTTCGTCCTTTTTTCTTACACCTTTTTCAGCCTCCTGCAGATACTCCAGTATCTTGAGGGGACAAACGGCGTATGAGTCAATCGTCGGTCACCGGCTACCATGGGACTACATCTCCTCACGATACGCCACTGCCTTGTGGATCAAACCTTTAGGTTGAAAGCTCCCGGTGTGG]

[+] EMBL AI394916             [TTTTTTTTTTTTTTTTGTATCGGAATACTGTTTTCAGCACTTCATTTTATAATTACACAATTCCATACTTCCTTCTGAACTACCTTCATTTATACAGTTCCTTGTCCACTCATACCTTGCCCGCACTTATTTTTCTTTAACACATTAGGATGTTCTTACCTGATAAATACTTAACTATTCCTCCATGAATATTGTGTGCTCTGCTTTTCGTCCTTTTTTCTTACACCTTTTTCAGCCTCCTGCAGATACTCCAGTATCTTGAGGGGACAAACGGCGTATGAGTCAATCGTCGGTCACCGGCTACCATGGGACTACATCTCCTCACGATACGCCACTGCCTTGTGGATCAAACCTTTAGGTTGAAAGCTCCCGGTGTGG]




>consensus_380#1
TTTTTTTTTTTTTTTTGTATCGGAATACTGTTTTCAGCACTTCATTTTATAATTACACAA
TTCCATACTTCCTTCTGAACTACCTTCATTTATACAGTTCCTTGTCCACTCATACCTTGC
CCGCACTTATTTTTCTTTAACACATTAGGATGTTCTTACCTGATAAATACTTAACTATTC
CTCCATGAATATTGTGTGCTCTGCTTTTCGTCCTTTTTTCTTACACCTTTTTCAGCCTCC
TGCAGATACTCCAGTATCTTGAGGGGACAAACGGCGTATGAGTCAATCGTCGGTCACCGG
CTACCATGGGACTACATCTCCTCACGATACGCCACTGCCTTGTGGATCAAACCTTTAGGT
TGAAAGCTCCCGGTGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_380#0      ACGTTTATTATGAAATAATAGTTTTATTAATTACAAGTGATCAAAGAATACTGGGATAAG 60
consensus_380#1      ------------------------------------------------------------
                                                                                 

consensus_380#0      AATTCTGTATACATGATAGATTCTTTTTTTGAAGAAAAATAACTTTTATGAAAATAATAT 120
consensus_380#1      ------------------------------------------------------------
                                                                                 

consensus_380#0      ATAAATTAGAATGATAAGGTAATTAGCAGTTATTTAAAGAAAATAATAATAATAATTCAA 180
consensus_380#1      ------------------------------------------------------------
                                                                                 

consensus_380#0      TATTTGGGTATTTCGGTTGATTAAGGTTCAGTATATTGTTTGTTG-GTGTTGTTGATTGG 239
consensus_380#1      --------TTTTTTTTTTTTTTTTGTATCGGAATACTGTTTTCAGCACTTCATTTTATAA 52
                             * ***   **  **  *  ** * *** *****   *    *  **   *  

consensus_380#0      ATACTTGATAACTAGGTTTTAGATAGATGAATTGGAGTATATAATGTTACTGATGCTATA 299
consensus_380#1      TTACACAATTCCATACTTCCTTCTGAACTACCTTCATT-TATACAGTTCCTTGT-CCACT 110
                      ***   **  *    **     *  *  *  *  * * ****  *** **  * * *  

consensus_380#0      CATTCACTACTTGGAATAATCTACATATATATGTAGAAAAAAAATTCATAAGATGATAAT 359
consensus_380#1      CATACCTTGCCCGCACTTATTTTTCTTTA---ACACATTAGGATGTTCTTACCTGATAAA 167
                     *** *  * *  * * * ** *   * **     * *  *  *  *  * *  ****** 

consensus_380#0      TATTTAATGAGTATCAAAGAAAATATATAATATCTGAATTTACAGTGATGAAAGGCAAAC 419
consensus_380#1      TACTTAACTATTCCTCCATGAA-TATTGTGTGCTCTGCTTTTCGTCCTTTTTTCTTACAC 226
                     ** ****  * *     *  ** ***    *       *** *     *       * **

consensus_380#0      ATTCTCAAGTACAGATCTATATAGTCGGTCTCAAATTCTACTGTGTGTAACACTGTTGTA 479
consensus_380#1      CTTTTT-----CAGCCTCCTGCAGATACTCCAGTATCTTGAGGGGACAAACGGCGTATGA 281
                      ** *      ***     *  **    **    **  *   * *   ***   **   *

consensus_380#0      TCCCGTGGAGAATTATGAATGGTAACTTTGAGGACTATTTATGGACCAATATGATATGTT 539
consensus_380#1      GTCAATCGTCGGTCAC---CGGCTACCATG-GGACTACATCT----CCTCACGATACGCC 333
                       *  * *    * *     **  **  ** ******  * *    *   * **** *  

consensus_380#0      ATATTTCCTATTGTATAATTGTTAAGTAACTAAACTATTCGTATTCGTCTCCCTCTTATC 599
consensus_380#1      AC-TGCCTTGTGGATCAAACCTTTAGGTTGAAAGCTCCCGGTGTGG-------------- 378
                     *  *  * * * *   **   ** **     ** **    ** *                

consensus_380#0      ATAGGCTTTA 609
consensus_380#1      ----------