cluster # 3801

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Schistosoma mansoni
cluster # 3801 cluster # 3801 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3801#0 length = 516 sequences # 1

consensus_3801#1 length = 209 sequences # 1

consensusID : consensus_3801#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 516
fasta sequence

                              [AAGTTTTATTTATACAAACAAATTATCTTAGAATACATAAATAAATACATATATAATTAGGATAATATTTTATACACATATATCAGTCATTACAACATCTTCCAATGTATTACAGTTTTGTTTTGTTAAAAGATTTCGCATATGCTCAAAGCCAGATTCAATGAGATAATGAAATTGTGGATCTTTGACCAAGTCTGCTAATTCATCACCAACAAACAATTGTTCTGGGCTTGGTAACAGGGAAATTACATCCACACCATTTTTATAAAGATTTGAAACAAGGGCACATATAAAACTTTGTGTACATATTTGAATAGGATCATGAATATCACCAGAAGTAGACCATTCATCCATTCGAATTGCTTGACACCAAATATATAATAATAGCTCATCTCGTACAATCATTGGATTCTGACAATCGTCATCATCATCATAACCACTATTATTTGGTCTTAAATCTAATACATTTTGTAAAATATCAATTAATGTGAAAGCACGTCGAAAATGCATAATCAT]

[+] EMBL CD073401             [AAGTTTTATTTATACAAACAAATTATCTTAGAATACATAAATAAATACATATATAATTAGGATAATATTTTATACACATATATCAGTCATTACAACATCTTCCAATGTATTACAGTTTTGTTTTGTTAAAAGATTTCGCATATGCTCAAAGCCAGATTCAATGAGATAATGAAATTGTGGATCTTTGACCAAGTCTGCTAATTCATCACCAACAAACAATTGTTCTGGGCTTGGTAACAGGGAAATTACATCCACACCATTTTTATAAAGATTTGAAACAAGGGCACATATAAAACTTTGTGTACATATTTGAATAGGATCATGAATATCACCAGAAGTAGACCATTCATCCATTCGAATTGCTTGACACCAAATATATAATAATAGCTCATCTCGTACAATCATTGGATTCTGACAATCGTCATCATCATCATAACCACTATTATTTGGTCTTAAATCTAATACATTTTGTAAAATATCAATTAATGTGAAAGCACGTCGAAAATGCATAATCAT]




>consensus_3801#0
AAGTTTTATTTATACAAACAAATTATCTTAGAATACATAAATAAATACATATATAATTAG
GATAATATTTTATACACATATATCAGTCATTACAACATCTTCCAATGTATTACAGTTTTG
TTTTGTTAAAAGATTTCGCATATGCTCAAAGCCAGATTCAATGAGATAATGAAATTGTGG
ATCTTTGACCAAGTCTGCTAATTCATCACCAACAAACAATTGTTCTGGGCTTGGTAACAG
GGAAATTACATCCACACCATTTTTATAAAGATTTGAAACAAGGGCACATATAAAACTTTG
TGTACATATTTGAATAGGATCATGAATATCACCAGAAGTAGACCATTCATCCATTCGAAT
TGCTTGACACCAAATATATAATAATAGCTCATCTCGTACAATCATTGGATTCTGACAATC
GTCATCATCATCATAACCACTATTATTTGGTCTTAAATCTAATACATTTTGTAAAATATC
AATTAATGTGAAAGCACGTCGAAAATGCATAATCAT

consensusID : consensus_3801#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 209
fasta sequence

                              [AAGTTTTATTTATACAAACAAATTATCTTAGAATACATAAATAAATACATATATGAATTAGGATAATACTTTATACACATATATCAGTCATTACAACATCTTCCAATGTATTACAAATTTGGTTTAGTTAAAAGATTTCGGCATATGCTCAAAGCCAGATTCCAATGAGATAATGAAATTGTGGAATCTTTGAAAAACACCCGGAAAAT]

[+] EMBL AI026175             [AAGTTTTATTTATACAAACAAATTATCTTAGAATACATAAATAAATACATATATGAATTAGGATAATACTTTATACACATATATCAGTCATTACAACATCTTCCAATGTATTACAAATTTGGTTTAGTTAAAAGATTTCGGCATATGCTCAAAGCCAGATTCCAATGAGATAATGAAATTGTGGAATCTTTGAAAAACACCCGGAAAAT]




>consensus_3801#1
AAGTTTTATTTATACAAACAAATTATCTTAGAATACATAAATAAATACATATATGAATTA
GGATAATACTTTATACACATATATCAGTCATTACAACATCTTCCAATGTATTACAAATTT
GGTTTAGTTAAAAGATTTCGGCATATGCTCAAAGCCAGATTCCAATGAGATAATGAAATT
GTGGAATCTTTGAAAAACACCCGGAAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3801#0      AAGTTTTATTTATACAAACAAATTATCTTAGAATACATAAATAAATACATATAT-AATTA 59
consensus_3801#1      AAGTTTTATTTATACAAACAAATTATCTTAGAATACATAAATAAATACATATATGAATTA 60
                      ****************************************************** *****

consensus_3801#0      GGATAATATTTTATACACATATATCAGTCATTACAACATCTTCCAATGTATTACAGTTTT 119
consensus_3801#1      GGATAATACTTTATACACATATATCAGTCATTACAACATCTTCCAATGTATTACAAATTT 120
                      ******** **********************************************  ***

consensus_3801#0      GTTTT-GTTAAAAGATTTCG-CATATGCTCAAAGCCAGATTC-AATGAGATAATGAAATT 176
consensus_3801#1      GGTTTAGTTAAAAGATTTCGGCATATGCTCAAAGCCAGATTCCAATGAGATAATGAAATT 180
                      * *** ************** ********************* *****************

consensus_3801#0      GTGGA-TCTTTGACCAA-GTCTGCTAATTCATCACCAACAAACAATTGTTCTGGGCTTGG 234
consensus_3801#1      GTGGAATCTTTGAAAAACACCCGGAAAAT------------------------------- 209
                      ***** *******  **   * *  ** *                               

consensus_3801#0      TAACAGGGAAATTACATCCACACCATTTTTATAAAGATTTGAAACAAGGGCACATATAAA 294
consensus_3801#1      ------------------------------------------------------------
                                                                                  

consensus_3801#0      ACTTTGTGTACATATTTGAATAGGATCATGAATATCACCAGAAGTAGACCATTCATCCAT 354
consensus_3801#1      ------------------------------------------------------------
                                                                                  

consensus_3801#0      TCGAATTGCTTGACACCAAATATATAATAATAGCTCATCTCGTACAATCATTGGATTCTG 414
consensus_3801#1      ------------------------------------------------------------
                                                                                  

consensus_3801#0      ACAATCGTCATCATCATCATAACCACTATTATTTGGTCTTAAATCTAATACATTTTGTAA 474
consensus_3801#1      ------------------------------------------------------------
                                                                                  

consensus_3801#0      AATATCAATTAATGTGAAAGCACGTCGAAAATGCATAATCAT 516
consensus_3801#1      ------------------------------------------