cluster # 382

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Schistosoma mansoni
cluster # 382 cluster # 382 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_382#0 length = 518 sequences # 1

consensus_382#1 length = 448 sequences # 1

consensusID : consensus_382#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 518
fasta sequence

                              [AAACTGCTTCCTGCTGGAAGGGGGCACTGTTCATACCATGGGGATCATGACAAAACTCAGAAACCTGTATAAGTCCGTATTTTTGGGGTCTGTAAAGCTGCATCATCTTAGCTGTCTCAATAGTTGGAACACCTGGTCCACTGCTTCCGGGGGTCTTGGTTCGTCAAACCACAGAAGCCTGGAAGAATCCTCAGCTTTTCATTTTCTGTGGAACATAAACTAAAACTCCTTTTCCAAGTAACATATCCTTATACTTAAATTTTGAAGTCAAGGCATTTTCAAAAGATATAAGTTGAATTAATTCAGCAGCATTTATAATCAAGTGTACTTCAGTAGCTGTTCCTTCCTTAGCAATGAAAAACTGAAAAACATAATAGTGTACAGTGTCCAGACTCTCTGTGTATTTCCATCTTAACGTGGCTAATAATTAAAATATAATACTTATTATTTAATTTATTATTTTCCCGAGACGGGTTTCTCTTAAAATATACGTGACTTGAGAAGAAATGAATGGCAAG]

[+] EMBL BE431213             [AAACTGCTTCCTGCTGGAAGGGGGCACTGTTCATACCATGGGGATCATGACAAAACTCAGAAACCTGTATAAGTCCGTATTTTTGGGGTCTGTAAAGCTGCATCATCTTAGCTGTCTCAATAGTTGGAACACCTGGTCCACTGCTTCCGGGGGTCTTGGTTCGTCAAACCACAGAAGCCTGGAAGAATCCTCAGCTTTTCATTTTCTGTGGAACATAAACTAAAACTCCTTTTCCAAGTAACATATCCTTATACTTAAATTTTGAAGTCAAGGCATTTTCAAAAGATATAAGTTGAATTAATTCAGCAGCATTTATAATCAAGTGTACTTCAGTAGCTGTTCCTTCCTTAGCAATGAAAAACTGAAAAACATAATAGTGTACAGTGTCCAGACTCTCTGTGTATTTCCATCTTAACGTGGCTAATAATTAAAATATAATACTTATTATTTAATTTATTATTTTCCCGAGACGGGTTTCTCTTAAAATATACGTGACTTGAGAAGAAATGAATGGCAAG]




>consensus_382#0
AAACTGCTTCCTGCTGGAAGGGGGCACTGTTCATACCATGGGGATCATGACAAAACTCAG
AAACCTGTATAAGTCCGTATTTTTGGGGTCTGTAAAGCTGCATCATCTTAGCTGTCTCAA
TAGTTGGAACACCTGGTCCACTGCTTCCGGGGGTCTTGGTTCGTCAAACCACAGAAGCCT
GGAAGAATCCTCAGCTTTTCATTTTCTGTGGAACATAAACTAAAACTCCTTTTCCAAGTA
ACATATCCTTATACTTAAATTTTGAAGTCAAGGCATTTTCAAAAGATATAAGTTGAATTA
ATTCAGCAGCATTTATAATCAAGTGTACTTCAGTAGCTGTTCCTTCCTTAGCAATGAAAA
ACTGAAAAACATAATAGTGTACAGTGTCCAGACTCTCTGTGTATTTCCATCTTAACGTGG
CTAATAATTAAAATATAATACTTATTATTTAATTTATTATTTTCCCGAGACGGGTTTCTC
TTAAAATATACGTGACTTGAGAAGAAATGAATGGCAAG

consensusID : consensus_382#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 448
fasta sequence

                              [AGATTTATAAACAATATGGGGATTTGGACATCACTCATTCCAAACTGCTTCCTGCTGGATGGGGGCACTGTTCATACCATGGGGATCATGACGAAACTCAAAAACCAAGTTATTATTTTTGGGGTCTGTAAGGCTGCATCATCCCGGCTGTTTCAGATGCTGGACTGCCTGGGACAGTGCTTCAGGAGGTCTTGCTTCATCAAACCATAAAAGCTTGGAAGCAATTCACAGCCTTTCATTTTCTATGGAAACATAAACAAAATCCTTTTTCCCAAGTAACCTGTACCTATATTTAAACTTAGAAGTCAAAACATTTTCAAAATATATAAGTTGTATTAGTTTAGTAGCATTTGTTTTAGAAGTTATTGCTATTTCCTTAGCAGTCAAACAATTCAAAGACAACACAATAGCAAACAGTATCCTGACTTTCCGGGTATTTTCCCGGCCT]

[+] EMBL AI740318             [AGATTTATAAACAATATGGGGATTTGGACATCACTCATTCCAAACTGCTTCCTGCTGGATGGGGGCACTGTTCATACCATGGGGATCATGACGAAACTCAAAAACCAAGTTATTATTTTTGGGGTCTGTAAGGCTGCATCATCCCGGCTGTTTCAGATGCTGGACTGCCTGGGACAGTGCTTCAGGAGGTCTTGCTTCATCAAACCATAAAAGCTTGGAAGCAATTCACAGCCTTTCATTTTCTATGGAAACATAAACAAAATCCTTTTTCCCAAGTAACCTGTACCTATATTTAAACTTAGAAGTCAAAACATTTTCAAAATATATAAGTTGTATTAGTTTAGTAGCATTTGTTTTAGAAGTTATTGCTATTTCCTTAGCAGTCAAACAATTCAAAGACAACACAATAGCAAACAGTATCCTGACTTTCCGGGTATTTTCCCGGCCT]




>consensus_382#1
AGATTTATAAACAATATGGGGATTTGGACATCACTCATTCCAAACTGCTTCCTGCTGGAT
GGGGGCACTGTTCATACCATGGGGATCATGACGAAACTCAAAAACCAAGTTATTATTTTT
GGGGTCTGTAAGGCTGCATCATCCCGGCTGTTTCAGATGCTGGACTGCCTGGGACAGTGC
TTCAGGAGGTCTTGCTTCATCAAACCATAAAAGCTTGGAAGCAATTCACAGCCTTTCATT
TTCTATGGAAACATAAACAAAATCCTTTTTCCCAAGTAACCTGTACCTATATTTAAACTT
AGAAGTCAAAACATTTTCAAAATATATAAGTTGTATTAGTTTAGTAGCATTTGTTTTAGA
AGTTATTGCTATTTCCTTAGCAGTCAAACAATTCAAAGACAACACAATAGCAAACAGTAT
CCTGACTTTCCGGGTATTTTCCCGGCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_382#0      -----------------------------------------AAACTGCTTCCTGCTGGAA 19
consensus_382#1      AGATTTATAAACAATATGGGGATTTGGACATCACTCATTCCAAACTGCTTCCTGCTGGAT 60
                                                              ****************** 

consensus_382#0      GGGGGCACTGTTCATACCATGGGGATCATGACAAAACTCAGAAACCTGTATAAGTCCGTA 79
consensus_382#1      GGGGGCACTGTTCATACCATGGGGATCATGACGAAACTCAAAAACC-----AAGTTATTA 115
                     ******************************** ******* *****     ****   **

consensus_382#0      TTTTTGGGGTCTGTAAAGCTGCATCATCTTAGCTGTCTCAATAGTTGGAACACCTGGTCC 139
consensus_382#1      TTTTTGGGGTCTGTAAGGCTGCATCATCCCGGCTGTTTCAGATGCTGGACTGCCTGGGAC 175
                     **************** ***********   ***** ***   * ****   *****  *

consensus_382#0      ACTGCTTCCGGGGGTCTTGGTTCGTCAAACCACAGAAGCCTGGAAG-AATCCTCAGCTTT 198
consensus_382#1      AGTGCTTCAGGAGGTCTTGCTTCATCAAACCATAAAAGCTTGGAAGCAATTCACAGCCTT 235
                     * ****** ** ******* *** ******** * **** ****** *** * **** **

consensus_382#0      TCATTTTCTGTGGAA-CATAAACTAAAACTCCTTTTCCAAGTAACATATCCTTATACTTA 257
consensus_382#1      TCATTTTCTATGGAAACATAAACAAAATCCTTTTTCCCAAGTAACCTGTACCTATATTTA 295
                     ********* ***** ******* *** *   *** ********* * * * **** ***

consensus_382#0      AATTTTGAAGTCAAGGCATTTTCAAAAGATATAAGTTGAATTAATTCAGCAGCATTTATA 317
consensus_382#1      AACTTAGAAGTCAAAACATTTTCAAAATATATAAGTTGTATTAGTTTAGTAGCATTTGTT 355
                     ** ** ********  *********** ********** **** ** ** ******* * 

consensus_382#0      ATCAAGTGTACTTCAGTAGCTGTTCCTTCCTTAGCAATGAAA-AACTGAAA---AACATA 373
consensus_382#1      TTAGA---------AGTTATTGCTATTTCCTTAGCAGTCAAACAATTCAAAGACAACACA 406
                      *  *         ***   ** *  ********** * *** ** * ***   **** *

consensus_382#0      ATAGTGTACAGTGTCCAGACTCTCTGTGTATTTCCATCTTAACGTGGCTAATAATTAAAA 433
consensus_382#1      ATAGCAAACAGTATCCTGACTTTCCGGGTATTT---TCCCGGCCT--------------- 448
                     ****   ***** *** **** ** * ******   **    * *               

consensus_382#0      TATAATACTTATTATTTAATTTATTATTTTCCCGAGACGGGTTTCTCTTAAAATATACGT 493
consensus_382#1      ------------------------------------------------------------
                                                                                 

consensus_382#0      GACTTGAGAAGAAATGAATGGCAAG 518
consensus_382#1      -------------------------