These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_382#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence [AAACTGCTTCCTGCTGGAAGGGGGCACTGTTCATACCATGGGGATCATGACAAAACTCAGAAACCTGTATAAGTCCGTATTTTTGGGGTCTGTAAAGCTGCATCATCTTAGCTGTCTCAATAGTTGGAACACCTGGTCCACTGCTTCCGGGGGTCTTGGTTCGTCAAACCACAGAAGCCTGGAAGAATCCTCAGCTTTTCATTTTCTGTGGAACATAAACTAAAACTCCTTTTCCAAGTAACATATCCTTATACTTAAATTTTGAAGTCAAGGCATTTTCAAAAGATATAAGTTGAATTAATTCAGCAGCATTTATAATCAAGTGTACTTCAGTAGCTGTTCCTTCCTTAGCAATGAAAAACTGAAAAACATAATAGTGTACAGTGTCCAGACTCTCTGTGTATTTCCATCTTAACGTGGCTAATAATTAAAATATAATACTTATTATTTAATTTATTATTTTCCCGAGACGGGTTTCTCTTAAAATATACGTGACTTGAGAAGAAATGAATGGCAAG] [+] EMBL BE431213 [AAACTGCTTCCTGCTGGAAGGGGGCACTGTTCATACCATGGGGATCATGACAAAACTCAGAAACCTGTATAAGTCCGTATTTTTGGGGTCTGTAAAGCTGCATCATCTTAGCTGTCTCAATAGTTGGAACACCTGGTCCACTGCTTCCGGGGGTCTTGGTTCGTCAAACCACAGAAGCCTGGAAGAATCCTCAGCTTTTCATTTTCTGTGGAACATAAACTAAAACTCCTTTTCCAAGTAACATATCCTTATACTTAAATTTTGAAGTCAAGGCATTTTCAAAAGATATAAGTTGAATTAATTCAGCAGCATTTATAATCAAGTGTACTTCAGTAGCTGTTCCTTCCTTAGCAATGAAAAACTGAAAAACATAATAGTGTACAGTGTCCAGACTCTCTGTGTATTTCCATCTTAACGTGGCTAATAATTAAAATATAATACTTATTATTTAATTTATTATTTTCCCGAGACGGGTTTCTCTTAAAATATACGTGACTTGAGAAGAAATGAATGGCAAG] consensusID : consensus_382#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence [AGATTTATAAACAATATGGGGATTTGGACATCACTCATTCCAAACTGCTTCCTGCTGGATGGGGGCACTGTTCATACCATGGGGATCATGACGAAACTCAAAAACCAAGTTATTATTTTTGGGGTCTGTAAGGCTGCATCATCCCGGCTGTTTCAGATGCTGGACTGCCTGGGACAGTGCTTCAGGAGGTCTTGCTTCATCAAACCATAAAAGCTTGGAAGCAATTCACAGCCTTTCATTTTCTATGGAAACATAAACAAAATCCTTTTTCCCAAGTAACCTGTACCTATATTTAAACTTAGAAGTCAAAACATTTTCAAAATATATAAGTTGTATTAGTTTAGTAGCATTTGTTTTAGAAGTTATTGCTATTTCCTTAGCAGTCAAACAATTCAAAGACAACACAATAGCAAACAGTATCCTGACTTTCCGGGTATTTTCCCGGCCT] [+] EMBL AI740318 [AGATTTATAAACAATATGGGGATTTGGACATCACTCATTCCAAACTGCTTCCTGCTGGATGGGGGCACTGTTCATACCATGGGGATCATGACGAAACTCAAAAACCAAGTTATTATTTTTGGGGTCTGTAAGGCTGCATCATCCCGGCTGTTTCAGATGCTGGACTGCCTGGGACAGTGCTTCAGGAGGTCTTGCTTCATCAAACCATAAAAGCTTGGAAGCAATTCACAGCCTTTCATTTTCTATGGAAACATAAACAAAATCCTTTTTCCCAAGTAACCTGTACCTATATTTAAACTTAGAAGTCAAAACATTTTCAAAATATATAAGTTGTATTAGTTTAGTAGCATTTGTTTTAGAAGTTATTGCTATTTCCTTAGCAGTCAAACAATTCAAAGACAACACAATAGCAAACAGTATCCTGACTTTCCGGGTATTTTCCCGGCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_382#0 -----------------------------------------AAACTGCTTCCTGCTGGAA 19 consensus_382#1 AGATTTATAAACAATATGGGGATTTGGACATCACTCATTCCAAACTGCTTCCTGCTGGAT 60 ****************** consensus_382#0 GGGGGCACTGTTCATACCATGGGGATCATGACAAAACTCAGAAACCTGTATAAGTCCGTA 79 consensus_382#1 GGGGGCACTGTTCATACCATGGGGATCATGACGAAACTCAAAAACC-----AAGTTATTA 115 ******************************** ******* ***** **** ** consensus_382#0 TTTTTGGGGTCTGTAAAGCTGCATCATCTTAGCTGTCTCAATAGTTGGAACACCTGGTCC 139 consensus_382#1 TTTTTGGGGTCTGTAAGGCTGCATCATCCCGGCTGTTTCAGATGCTGGACTGCCTGGGAC 175 **************** *********** ***** *** * **** ***** * consensus_382#0 ACTGCTTCCGGGGGTCTTGGTTCGTCAAACCACAGAAGCCTGGAAG-AATCCTCAGCTTT 198 consensus_382#1 AGTGCTTCAGGAGGTCTTGCTTCATCAAACCATAAAAGCTTGGAAGCAATTCACAGCCTT 235 * ****** ** ******* *** ******** * **** ****** *** * **** ** consensus_382#0 TCATTTTCTGTGGAA-CATAAACTAAAACTCCTTTTCCAAGTAACATATCCTTATACTTA 257 consensus_382#1 TCATTTTCTATGGAAACATAAACAAAATCCTTTTTCCCAAGTAACCTGTACCTATATTTA 295 ********* ***** ******* *** * *** ********* * * * **** *** consensus_382#0 AATTTTGAAGTCAAGGCATTTTCAAAAGATATAAGTTGAATTAATTCAGCAGCATTTATA 317 consensus_382#1 AACTTAGAAGTCAAAACATTTTCAAAATATATAAGTTGTATTAGTTTAGTAGCATTTGTT 355 ** ** ******** *********** ********** **** ** ** ******* * consensus_382#0 ATCAAGTGTACTTCAGTAGCTGTTCCTTCCTTAGCAATGAAA-AACTGAAA---AACATA 373 consensus_382#1 TTAGA---------AGTTATTGCTATTTCCTTAGCAGTCAAACAATTCAAAGACAACACA 406 * * *** ** * ********** * *** ** * *** **** * consensus_382#0 ATAGTGTACAGTGTCCAGACTCTCTGTGTATTTCCATCTTAACGTGGCTAATAATTAAAA 433 consensus_382#1 ATAGCAAACAGTATCCTGACTTTCCGGGTATTT---TCCCGGCCT--------------- 448 **** ***** *** **** ** * ****** ** * * consensus_382#0 TATAATACTTATTATTTAATTTATTATTTTCCCGAGACGGGTTTCTCTTAAAATATACGT 493 consensus_382#1 ------------------------------------------------------------ consensus_382#0 GACTTGAGAAGAAATGAATGGCAAG 518 consensus_382#1 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||