cluster # 3834

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Schistosoma mansoni
cluster # 3834 cluster # 3834 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3834#0 length = 361 sequences # 1

consensus_3834#1 length = 338 sequences # 1

consensusID : consensus_3834#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 361
fasta sequence

                              [CGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTGACTTGATGAAATACTTTAATGATTATAGTTATTAGGAAAATATGTGTGCAAGTGAATGAGTTGAAACATGACAGTCTATTTCAAAAATAGCAAATACTCAATTTGATAATAGAAACTATCAATTTTATCAGTTCAACTTATCAATTAGGTTGAAAAGTTTGGTATAATCTTTTTGGACGCAATATTGTTGTTGATTTACAGAATTGGTTTTTATGATCAACTTTGGAAGCCAATAATTTTTGACTCGATGAAAACGCTCAGACGGATCAACATTTTGTAAAAGTCGTCTAATCCAGTATAAAAGACGTCCA]

[+] EMBL AI977523             [CGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTGACTTGATGAAATACTTTAATGATTATAGTTATTAGGAAAATATGTGTGCAAGTGAATGAGTTGAAACATGACAGTCTATTTCAAAAATAGCAAATACTCAATTTGATAATAGAAACTATCAATTTTATCAGTTCAACTTATCAATTAGGTTGAAAAGTTTGGTATAATCTTTTTGGACGCAATATTGTTGTTGATTTACAGAATTGGTTTTTATGATCAACTTTGGAAGCCAATAATTTTTGACTCGATGAAAACGCTCAGACGGATCAACATTTTGTAAAAGTCGTCTAATCCAGTATAAAAGACGTCCA]




>consensus_3834#0
CGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTGACTTGATGAA
ATACTTTAATGATTATAGTTATTAGGAAAATATGTGTGCAAGTGAATGAGTTGAAACATG
ACAGTCTATTTCAAAAATAGCAAATACTCAATTTGATAATAGAAACTATCAATTTTATCA
GTTCAACTTATCAATTAGGTTGAAAAGTTTGGTATAATCTTTTTGGACGCAATATTGTTG
TTGATTTACAGAATTGGTTTTTATGATCAACTTTGGAAGCCAATAATTTTTGACTCGATG
AAAACGCTCAGACGGATCAACATTTTGTAAAAGTCGTCTAATCCAGTATAAAAGACGTCC
A

consensusID : consensus_3834#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 338
fasta sequence

                              [TATATTAAAATACGTGGATGATTATGGTTGTTAGAAAAACAGGTGTGCAAGTGAATGAGTTAAAAGTTTAAACAAAAACCATGAATATGCTATGTATGTTTATACAAATTAAATAAAGCAATCATAAACGAAATTCTATCAGAAATAAATACTAGCGTTGATAATAGAAGCTATAAATTTTATCAGTTCAACTTATCAATTAGATTGAAAAGTTTGGTAAAATCTCTTTGGGCGCAGTCCTGTTGTTGACTGATAAAATTGGTTTTTATGAGCAATTTCGGAAGCCAATCATTTATGACTTTATGGAAACGCTCAAACGGATCAATACTTTGTAAAAG]

[+] EMBL CD135701             [TATATTAAAATACGTGGATGATTATGGTTGTTAGAAAAACAGGTGTGCAAGTGAATGAGTTAAAAGTTTAAACAAAAACCATGAATATGCTATGTATGTTTATACAAATTAAATAAAGCAATCATAAACGAAATTCTATCAGAAATAAATACTAGCGTTGATAATAGAAGCTATAAATTTTATCAGTTCAACTTATCAATTAGATTGAAAAGTTTGGTAAAATCTCTTTGGGCGCAGTCCTGTTGTTGACTGATAAAATTGGTTTTTATGAGCAATTTCGGAAGCCAATCATTTATGACTTTATGGAAACGCTCAAACGGATCAATACTTTGTAAAAG]




>consensus_3834#1
TATATTAAAATACGTGGATGATTATGGTTGTTAGAAAAACAGGTGTGCAAGTGAATGAGT
TAAAAGTTTAAACAAAAACCATGAATATGCTATGTATGTTTATACAAATTAAATAAAGCA
ATCATAAACGAAATTCTATCAGAAATAAATACTAGCGTTGATAATAGAAGCTATAAATTT
TATCAGTTCAACTTATCAATTAGATTGAAAAGTTTGGTAAAATCTCTTTGGGCGCAGTCC
TGTTGTTGACTGATAAAATTGGTTTTTATGAGCAATTTCGGAAGCCAATCATTTATGACT
TTATGGAAACGCTCAAACGGATCAATACTTTGTAAAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3834#0      --CGGTAATGCAGCTGCATGGC-ATGTTTTTTTTTTTTTTTTTTTTTTTTTTGACTTGAT 57
consensus_3834#1      TATATTAAAATACGTGGATGATTATGGTTGTTAGAAAAACAGGTGTGCAAGTGAATGAGT 60
                           ***   *  ** ***   *** ** **           * *     *** *   *

consensus_3834#0      GAAATACTTTAATGATTATAGTTATTAGGAAAATATGTGTGCAAGTGAATGAGTTGAAAC 117
consensus_3834#1      TAAAAGTTTAAACAAAAACCATGAATATGCTA-TGTATGTTTATACAAATTAAATAAAGC 119
                       ***   ** **  *  *   * * ** *  * * * ***  *    *** *  * ** *

consensus_3834#0      A-TGACAGTCTA--TTTCAAAAATAGCAAATACTCAATTTGATAATAGAAACTATCAATT 174
consensus_3834#1      AATCATAAACGAAATTCTATCAGAAATAAATACTAGCGTTGATAATAGAAGCTATAAATT 179
                      * * * *  * *  **  *  *  *  *******    ************ **** ****

consensus_3834#0      TTATCAGTTCAACTTATCAATTAGGTTGAAAAGTTTGGTATAATCTTTTTGGACGCAATA 234
consensus_3834#1      TTATCAGTTCAACTTATCAATTAGATTGAAAAGTTTGGTAAAATCTCTTTGGGCGCAGTC 239
                      ************************ *************** ***** ***** **** * 

consensus_3834#0      TTGTTGTTGATTTACAGAATTGGTTTTTATGATCAACTTTGGAAGCCAATAATTTTTGAC 294
consensus_3834#1      CTGTTGTTGACTGATAAAATTGGTTTTTATGAGCAATTTCGGAAGCCAATCATTTATGAC 299
                       ********* * * * *************** *** ** ********** **** ****

consensus_3834#0      TCGATGAAAACGCTCAGACGGATCAACATTTTGTAAAAGTCGTCTAATCCAGTATAAAAG 354
consensus_3834#1      TTTATGGAAACGCTCAAACGGATCAATACTTTGTAAAAG--------------------- 338
                      *  *** ********* ********* * **********                     

consensus_3834#0      ACGTCCA 361
consensus_3834#1      -------