cluster # 384

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 384 cluster # 384 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_384#0 length = 487 sequences # 1

consensus_384#1 length = 456 sequences # 1

consensusID : consensus_384#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 487
fasta sequence

                              [AGACGACATGACGAGTAACCCGTAATTCCTAAATGTTTGTAGTCCTTACTTCAGTTACTGAAGTATTATCGCATGAGATAGCTGCTTTTTTAGTAATTAACGAGTAATGTTTGTAATGATTTATGTTCCAGAGACATTTCGGTCGACTTAAGTGAGGCGTTTCGACGCATAATATTGAGCAGGCGTTTTGGAAACTGGATTGAATTCGATGGTGTGTTTAAGGAGTTCCAAAAAACCACCTGTACGCATAACATTCACGGCGAAAGTAAACTGCTGAAGGACATGCGATTTAAATACAGTTTTGTGGTGTTATGAACTAGATGCAGGCACTTGCGAGTGCAATTGTCGAACATTTATGACTTGTCGATATCCTTGTCGTCATATACTACTGACATATGTAAAAAGACCAACTCTTACAGCTCATCACATACTTAGACCATGCAGCCGATGGAAGTTAAATAACACGCATAACTTCCATTANTATACA]

[+] EMBL CD189980             [AGACGACATGACGAGTAACCCGTAATTCCTAAATGTTTGTAGTCCTTACTTCAGTTACTGAAGTATTATCGCATGAGATAGCTGCTTTTTTAGTAATTAACGAGTAATGTTTGTAATGATTTATGTTCCAGAGACATTTCGGTCGACTTAAGTGAGGCGTTTCGACGCATAATATTGAGCAGGCGTTTTGGAAACTGGATTGAATTCGATGGTGTGTTTAAGGAGTTCCAAAAAACCACCTGTACGCATAACATTCACGGCGAAAGTAAACTGCTGAAGGACATGCGATTTAAATACAGTTTTGTGGTGTTATGAACTAGATGCAGGCACTTGCGAGTGCAATTGTCGAACATTTATGACTTGTCGATATCCTTGTCGTCATATACTACTGACATATGTAAAAAGACCAACTCTTACAGCTCATCACATACTTAGACCATGCAGCCGATGGAAGTTAAATAACACGCATAACTTCCATTANTATACA]




>consensus_384#0
AGACGACATGACGAGTAACCCGTAATTCCTAAATGTTTGTAGTCCTTACTTCAGTTACTG
AAGTATTATCGCATGAGATAGCTGCTTTTTTAGTAATTAACGAGTAATGTTTGTAATGAT
TTATGTTCCAGAGACATTTCGGTCGACTTAAGTGAGGCGTTTCGACGCATAATATTGAGC
AGGCGTTTTGGAAACTGGATTGAATTCGATGGTGTGTTTAAGGAGTTCCAAAAAACCACC
TGTACGCATAACATTCACGGCGAAAGTAAACTGCTGAAGGACATGCGATTTAAATACAGT
TTTGTGGTGTTATGAACTAGATGCAGGCACTTGCGAGTGCAATTGTCGAACATTTATGAC
TTGTCGATATCCTTGTCGTCATATACTACTGACATATGTAAAAAGACCAACTCTTACAGC
TCATCACATACTTAGACCATGCAGCCGATGGAAGTTAAATAACACGCATAACTTCCATTA
NTATACA

consensusID : consensus_384#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 456
fasta sequence

                              [ATTAAATATGAACCAGTTTAGCTTGGAAGTGGAAGAATAAAACCGACTATGTCAAGGGATTTTGTTGAGAGTTTGACGTATGACAACATATCTGAAATAAGTTGTTGAGCTGACGATGTTTCCGTTTTACGGCGTTATATGTTTCTAATGATTACCATATTAATTTTAGGGCGCTTTAAAGTGAAGACAGATATGTCCGTTAACCGTACAACGTATGTTGCGGTATTCATGTCTTTAAGAAAGGCGAACTGGCAGTTAGAAACTTACGTGAAATACAATATATAGTGTTTTAGGGGCATAAGCACACCCATTCGGAAGCAAACCCAACTCGACACGGCCAGACGGTCGGNGGTTCCATTGTGGTATCTCATGAGCGTCGTGTTAGGCACCATAGGCATAACAACAGGCTGTGCTAAGAAATCTGTTTGTGTAGCCATGTTCTCTAGTGGTCGAACC]

[+] EMBL CD148514             [ATTAAATATGAACCAGTTTAGCTTGGAAGTGGAAGAATAAAACCGACTATGTCAAGGGATTTTGTTGAGAGTTTGACGTATGACAACATATCTGAAATAAGTTGTTGAGCTGACGATGTTTCCGTTTTACGGCGTTATATGTTTCTAATGATTACCATATTAATTTTAGGGCGCTTTAAAGTGAAGACAGATATGTCCGTTAACCGTACAACGTATGTTGCGGTATTCATGTCTTTAAGAAAGGCGAACTGGCAGTTAGAAACTTACGTGAAATACAATATATAGTGTTTTAGGGGCATAAGCACACCCATTCGGAAGCAAACCCAACTCGACACGGCCAGACGGTCGGNGGTTCCATTGTGGTATCTCATGAGCGTCGTGTTAGGCACCATAGGCATAACAACAGGCTGTGCTAAGAAATCTGTTTGTGTAGCCATGTTCTCTAGTGGTCGAACC]




>consensus_384#1
ATTAAATATGAACCAGTTTAGCTTGGAAGTGGAAGAATAAAACCGACTATGTCAAGGGAT
TTTGTTGAGAGTTTGACGTATGACAACATATCTGAAATAAGTTGTTGAGCTGACGATGTT
TCCGTTTTACGGCGTTATATGTTTCTAATGATTACCATATTAATTTTAGGGCGCTTTAAA
GTGAAGACAGATATGTCCGTTAACCGTACAACGTATGTTGCGGTATTCATGTCTTTAAGA
AAGGCGAACTGGCAGTTAGAAACTTACGTGAAATACAATATATAGTGTTTTAGGGGCATA
AGCACACCCATTCGGAAGCAAACCCAACTCGACACGGCCAGACGGTCGGNGGTTCCATTG
TGGTATCTCATGAGCGTCGTGTTAGGCACCATAGGCATAACAACAGGCTGTGCTAAGAAA
TCTGTTTGTGTAGCCATGTTCTCTAGTGGTCGAACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_384#0      AGACGACATGACGAGTAACCCGTAATTCCTAAATGTTTGTAGTCCTTACTTCAGTTACTG 60
consensus_384#1      ---------------------ATTAAATATGAACCAGTTTAGCTTGGAAGTGGAAGAATA 39
                                           * *    * **    * ***     *  *     * * 

consensus_384#0      AAGT--ATTATCGCATGAGATA--GCTGCTTTTTTAGTAATTAACGAGTAATGTTTGTAA 116
consensus_384#1      AAACCGACTATGTCAAGGGATTTTGTTGAGAGTTTGACGTATGACAA--CATATCTGAAA 97
                     **    * ***  ** * ***   * **    ***      * ** *   ** * ** **

consensus_384#0      TGATTTAT-GTTCCAGAGACATTTCGGTCGACTTAAGTGAGGCGTTTCGACGCATAATAT 175
consensus_384#1      TAAGTTGTTGAGCTGACGATGTTTCCGTTTTACGGCGTTATATGTTTCTAATGATTACCA 157
                     * * ** * *  *    **  **** **        ** *   ***** *   ** *   

consensus_384#0      TGAGCAGGCGTTTTGGAAACTGGATTGAATTCGATGGTGTGTTTAAGGAGTTCCAAAAAA 235
consensus_384#1      T-ATTAATTTTAGGGCGCTTTAAAGTGAAGACAGATATGTCCGTTAACCGTACAACGTAT 216
                     * *  *    *   *     *  * ****  *     ***   * *   ** * *   * 

consensus_384#0      CCACCTGTACGCATAACATTCACGGCGAAAGTAAACTG-CTGAAGGACATGCGATTTAAA 294
consensus_384#1      GTTGCGGTATTCATGTCTTTAAG---AAAGGCGAACTGGCAGTTAGAAACTTACGTGAAA 273
                         * ***  ***  * ** *     ** *  ***** * *   ** *      * ***

consensus_384#0      TACAGTTT-TGTGGTGTTATGAAC-TAGATGCAGGCACTTGCGAGTGCAATTGTCG-AAC 351
consensus_384#1      TACAATATATAGTGTTTTAGGGGCATAAGCACACCCATTCGGAAGCAAACCCAACTCGAC 333
                     **** * * *   ** *** *  * **    **  ** * *  **   *     *   **

consensus_384#0      ATTTATGACTTGTCGATATCCTTGTCGTCATATACTACTGACATATGTAAAAAGACCAAC 411
consensus_384#1      ACGGCCAGACGGTCGGNGGTTCCATTGTGGTATCTCATGAGCGTCGTGTTAGGCACCA-- 391
                     *          ****         * **  ***   *    * *      *   ****  

consensus_384#0      TCTTACAGCTCATCACATACTTAGACCATGCAGCCGATGGAAGTTAAATAACACGCATAA 471
consensus_384#1      ---TAGGCATAACAACAGGCT-GTGCTAAGAAATCTGT-----TTGTGTAGC---CATGT 439
                        **    * *  ***  **    * * * *  *  *     **   ** *   ***  

consensus_384#0      CTTCCATTANTATACA- 487
consensus_384#1      TCTCTAGTGGTCGAACC 456
                       ** * *  *  *