cluster # 3846

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Schistosoma mansoni
cluster # 3846 cluster # 3846 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3846#0 length = 562 sequences # 1

consensus_3846#1 length = 494 sequences # 1

consensusID : consensus_3846#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 562
fasta sequence

                              [CACTGTGCTTCATGTATCACCAATGGGTGGTCTACACCATTGCCCTGTGAAGATCTTCTTGTAAGCTCATCATATTCCTCTGCATAGCTATAAAGAATGTCGATTGATTTCATTGCTTTGCTACTTAGTCCCGTAACAAATACATCTTCATTTGCGATAGACATAGCACGTGATGCTCTTCTACATGATGTAGGATCAAGTTGTGATAGTCTTCTGGTTTGCCCAGGTACTGCTAAAAGTCCACCTGGAGCCAAAGATGGTCTTACAGAACTTAAACGACGGGTTACTGGAGCTACAGGTAAATTAAGTAGTGCTCTTTCACGATCTTCTTTTTCAAGCTTTTTTTCAGCCCGATATTCAGAAGTTAAGCTTAATATTTTCTCCGCCATGAAAAAGAAATATACACCACCCAAAGCAACCAAGCCTTTCATAATTGCTATACGTTCACTATTTTCTTCCTTAGATGATATCACTTCACCACCATAATCATGACCTTGACCACCGCTTATAGCATGAGGAAGTAAATGTAGCATAGCATCACCAGTTAAAGCTCCAACAGCCA]

[+] EMBL CD178283             [CACTGTGCTTCATGTATCACCAATGGGTGGTCTACACCATTGCCCTGTGAAGATCTTCTTGTAAGCTCATCATATTCCTCTGCATAGCTATAAAGAATGTCGATTGATTTCATTGCTTTGCTACTTAGTCCCGTAACAAATACATCTTCATTTGCGATAGACATAGCACGTGATGCTCTTCTACATGATGTAGGATCAAGTTGTGATAGTCTTCTGGTTTGCCCAGGTACTGCTAAAAGTCCACCTGGAGCCAAAGATGGTCTTACAGAACTTAAACGACGGGTTACTGGAGCTACAGGTAAATTAAGTAGTGCTCTTTCACGATCTTCTTTTTCAAGCTTTTTTTCAGCCCGATATTCAGAAGTTAAGCTTAATATTTTCTCCGCCATGAAAAAGAAATATACACCACCCAAAGCAACCAAGCCTTTCATAATTGCTATACGTTCACTATTTTCTTCCTTAGATGATATCACTTCACCACCATAATCATGACCTTGACCACCGCTTATAGCATGAGGAAGTAAATGTAGCATAGCATCACCAGTTAAAGCTCCAACAGCCA]




>consensus_3846#0
CACTGTGCTTCATGTATCACCAATGGGTGGTCTACACCATTGCCCTGTGAAGATCTTCTT
GTAAGCTCATCATATTCCTCTGCATAGCTATAAAGAATGTCGATTGATTTCATTGCTTTG
CTACTTAGTCCCGTAACAAATACATCTTCATTTGCGATAGACATAGCACGTGATGCTCTT
CTACATGATGTAGGATCAAGTTGTGATAGTCTTCTGGTTTGCCCAGGTACTGCTAAAAGT
CCACCTGGAGCCAAAGATGGTCTTACAGAACTTAAACGACGGGTTACTGGAGCTACAGGT
AAATTAAGTAGTGCTCTTTCACGATCTTCTTTTTCAAGCTTTTTTTCAGCCCGATATTCA
GAAGTTAAGCTTAATATTTTCTCCGCCATGAAAAAGAAATATACACCACCCAAAGCAACC
AAGCCTTTCATAATTGCTATACGTTCACTATTTTCTTCCTTAGATGATATCACTTCACCA
CCATAATCATGACCTTGACCACCGCTTATAGCATGAGGAAGTAAATGTAGCATAGCATCA
CCAGTTAAAGCTCCAACAGCCA

consensusID : consensus_3846#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 494
fasta sequence

                              [CTTCATGTTTTACCAATGGTTGTTCTACACCATTGTCCTGTGAAGATCTTCTTGTAAGCTCATCATATTCCTCTGCATAGCTNTGCTACTTAGTCCCGTAACAAATACATCTTCATNTGCGATAGACATAGCACGTGATGCTCTTCTACATGATGTAGGATCAAGTTGTGATAGTCTTCTGGTTTGCCCAGGTACTGCTAAAAGTCCACCTGGAGCCAAAGATGGTCTTACAGAACTTAAACGACGGGTTACTGGAGCTACAGGTAAATTAAGTAGTGCTCTTTCACGATCTTCTTTTTCAAGCTTTTTTTCAGCCCGATATTCAGAAGTTAAGCTTAATATTTTCTCCGCCATGAAAAAGAAATATACACCACCCAAAGCAACCAAGCCTCTCATAATTGCTATACGTTCACTATTTTCTTCCTTAGATGATATCACTTCACCACCATAATCATGACCTTGACCACCGCTTATAGCATGAGGAAGTAAATGTA]

[-] EMBL CD178890             [CTTCATGTTTTACCAATGGTTGTTCTACACCATTGTCCTGTGAAGATCTTCTTGTAAGCTCATCATATTCCTCTGCATAGCTNTGCTACTTAGTCCCGTAACAAATACATCTTCATNTGCGATAGACATAGCACGTGATGCTCTTCTACATGATGTAGGATCAAGTTGTGATAGTCTTCTGGTTTGCCCAGGTACTGCTAAAAGTCCACCTGGAGCCAAAGATGGTCTTACAGAACTTAAACGACGGGTTACTGGAGCTACAGGTAAATTAAGTAGTGCTCTTTCACGATCTTCTTTTTCAAGCTTTTTTTCAGCCCGATATTCAGAAGTTAAGCTTAATATTTTCTCCGCCATGAAAAAGAAATATACACCACCCAAAGCAACCAAGCCTCTCATAATTGCTATACGTTCACTATTTTCTTCCTTAGATGATATCACTTCACCACCATAATCATGACCTTGACCACCGCTTATAGCATGAGGAAGTAAATGTA]




>consensus_3846#1
CTTCATGTTTTACCAATGGTTGTTCTACACCATTGTCCTGTGAAGATCTTCTTGTAAGCT
CATCATATTCCTCTGCATAGCTNTGCTACTTAGTCCCGTAACAAATACATCTTCATNTGC
GATAGACATAGCACGTGATGCTCTTCTACATGATGTAGGATCAAGTTGTGATAGTCTTCT
GGTTTGCCCAGGTACTGCTAAAAGTCCACCTGGAGCCAAAGATGGTCTTACAGAACTTAA
ACGACGGGTTACTGGAGCTACAGGTAAATTAAGTAGTGCTCTTTCACGATCTTCTTTTTC
AAGCTTTTTTTCAGCCCGATATTCAGAAGTTAAGCTTAATATTTTCTCCGCCATGAAAAA
GAAATATACACCACCCAAAGCAACCAAGCCTCTCATAATTGCTATACGTTCACTATTTTC
TTCCTTAGATGATATCACTTCACCACCATAATCATGACCTTGACCACCGCTTATAGCATG
AGGAAGTAAATGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3846#0      CACTGTGCTTCATGTATCACCAATGGGTGGTCTACACCATTGCCCTGTGAAGATCTTCTT 60
consensus_3846#1      -------CTTCATGTTTTACCAATGGTTGTTCTACACCATTGTCCTGTGAAGATCTTCTT 53
                             ******** * ******** ** ************ *****************

consensus_3846#0      GTAAGCTCATCATATTCCTCTGCATAGCTATAAAGAATGTCGATTGATTTCATTGCTTTG 120
consensus_3846#1      GTAAGCTCATCATATTCCTCTGCATAGCTNT----------------------------G 85
                      ***************************** *                            *

consensus_3846#0      CTACTTAGTCCCGTAACAAATACATCTTCATTTGCGATAGACATAGCACGTGATGCTCTT 180
consensus_3846#1      CTACTTAGTCCCGTAACAAATACATCTTCATNTGCGATAGACATAGCACGTGATGCTCTT 145
                      ******************************* ****************************

consensus_3846#0      CTACATGATGTAGGATCAAGTTGTGATAGTCTTCTGGTTTGCCCAGGTACTGCTAAAAGT 240
consensus_3846#1      CTACATGATGTAGGATCAAGTTGTGATAGTCTTCTGGTTTGCCCAGGTACTGCTAAAAGT 205
                      ************************************************************

consensus_3846#0      CCACCTGGAGCCAAAGATGGTCTTACAGAACTTAAACGACGGGTTACTGGAGCTACAGGT 300
consensus_3846#1      CCACCTGGAGCCAAAGATGGTCTTACAGAACTTAAACGACGGGTTACTGGAGCTACAGGT 265
                      ************************************************************

consensus_3846#0      AAATTAAGTAGTGCTCTTTCACGATCTTCTTTTTCAAGCTTTTTTTCAGCCCGATATTCA 360
consensus_3846#1      AAATTAAGTAGTGCTCTTTCACGATCTTCTTTTTCAAGCTTTTTTTCAGCCCGATATTCA 325
                      ************************************************************

consensus_3846#0      GAAGTTAAGCTTAATATTTTCTCCGCCATGAAAAAGAAATATACACCACCCAAAGCAACC 420
consensus_3846#1      GAAGTTAAGCTTAATATTTTCTCCGCCATGAAAAAGAAATATACACCACCCAAAGCAACC 385
                      ************************************************************

consensus_3846#0      AAGCCTTTCATAATTGCTATACGTTCACTATTTTCTTCCTTAGATGATATCACTTCACCA 480
consensus_3846#1      AAGCCTCTCATAATTGCTATACGTTCACTATTTTCTTCCTTAGATGATATCACTTCACCA 445
                      ****** *****************************************************

consensus_3846#0      CCATAATCATGACCTTGACCACCGCTTATAGCATGAGGAAGTAAATGTAGCATAGCATCA 540
consensus_3846#1      CCATAATCATGACCTTGACCACCGCTTATAGCATGAGGAAGTAAATGTA----------- 494
                      *************************************************           

consensus_3846#0      CCAGTTAAAGCTCCAACAGCCA 562
consensus_3846#1      ----------------------