cluster # 3868

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Schistosoma mansoni
cluster # 3868 cluster # 3868 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3868#0 length = 484 sequences # 1

consensus_3868#1 length = 480 sequences # 1

consensusID : consensus_3868#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 484
fasta sequence

                              [ATGCAGAATTTTAATGCATGATTATGAAATGCGATAAATGCCATATATATATATATATATATATTGAGATCAGAAGCAATTTGCAAAATAAAACAATGGGAAGACAACCCAAATTGGTTCACAGAAATATTTGAGTCGGAAGTGACGTAGGGAATGTGAACAACAGAATTTCAATATGCTTCGAACGGTGGCTGTTTGAAGTTACTCAATGAGTATAGAAGATACGGTAATACAGCCACTTAGAACGCCACAGAGAAAATGAATTGTCGAATTTGAACACATAAACACCAACACCTGGATACTGATGGGTACCACAATAAACTTCTGTATGACAATCCCTTCTATAGATTGGTATAAGTTCATCAATAGGTAAACGCTGTTGTAATGACTTTTTGCCTAATTCCAAATCATGAGATTCTTTATTTTCGTTTTTAGGCGACGTTTGCTCCACAGAATTTCCACTATTAGGTCCTTCTTCATCCTC]

[+] EMBL CD178455             [ATGCAGAATTTTAATGCATGATTATGAAATGCGATAAATGCCATATATATATATATATATATATTGAGATCAGAAGCAATTTGCAAAATAAAACAATGGGAAGACAACCCAAATTGGTTCACAGAAATATTTGAGTCGGAAGTGACGTAGGGAATGTGAACAACAGAATTTCAATATGCTTCGAACGGTGGCTGTTTGAAGTTACTCAATGAGTATAGAAGATACGGTAATACAGCCACTTAGAACGCCACAGAGAAAATGAATTGTCGAATTTGAACACATAAACACCAACACCTGGATACTGATGGGTACCACAATAAACTTCTGTATGACAATCCCTTCTATAGATTGGTATAAGTTCATCAATAGGTAAACGCTGTTGTAATGACTTTTTGCCTAATTCCAAATCATGAGATTCTTTATTTTCGTTTTTAGGCGACGTTTGCTCCACAGAATTTCCACTATTAGGTCCTTCTTCATCCTC]




>consensus_3868#0
ATGCAGAATTTTAATGCATGATTATGAAATGCGATAAATGCCATATATATATATATATAT
ATATTGAGATCAGAAGCAATTTGCAAAATAAAACAATGGGAAGACAACCCAAATTGGTTC
ACAGAAATATTTGAGTCGGAAGTGACGTAGGGAATGTGAACAACAGAATTTCAATATGCT
TCGAACGGTGGCTGTTTGAAGTTACTCAATGAGTATAGAAGATACGGTAATACAGCCACT
TAGAACGCCACAGAGAAAATGAATTGTCGAATTTGAACACATAAACACCAACACCTGGAT
ACTGATGGGTACCACAATAAACTTCTGTATGACAATCCCTTCTATAGATTGGTATAAGTT
CATCAATAGGTAAACGCTGTTGTAATGACTTTTTGCCTAATTCCAAATCATGAGATTCTT
TATTTTCGTTTTTAGGCGACGTTTGCTCCACAGAATTTCCACTATTAGGTCCTTCTTCAT
CCTC

consensusID : consensus_3868#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 480
fasta sequence

                              [ACATTTACTTTTCATGAAGTGTTGACCAGAAAAAAATTCATTATTAGAAAATACCATAAGTGAAATGAATGTTGAAAAAAAAGCAATTTAATTCATCCCAACATAAAATACTTATATGTTGTAAAACAGAACAAGCCAAAATATGAAGGATACTTTAGGTAGAAGGTAATCAATTATGCAGAATTTTAATGCATGATTATGAAATGCGATAAATGCCATATATATATATATATATATATATATATATATATATATATATATATATATATATTGAGATCAGAAGCAATTTGCAAAATAAAACAATGGGAAGGCAACCCAAATTGGTTCACAGAAATATTTGAGTCGGAAGTGACCTACGGAATGTGAACAACAGAATTTCAATATGCTTCGAACGGTGGCTGTTTGAAGTTACTCAATGAGTATAGAAGATACGGTAATACAGCCACTTAGAAAGCCACAGAGAAAATGAATTGTCGAATT]

[+] EMBL AI067228             [ACATTTACTTTTCATGAAGTGTTGACCAGAAAAAAATTCATTATTAGAAAATACCATAAGTGAAATGAATGTTGAAAAAAAAGCAATTTAATTCATCCCAACATAAAATACTTATATGTTGTAAAACAGAACAAGCCAAAATATGAAGGATACTTTAGGTAGAAGGTAATCAATTATGCAGAATTTTAATGCATGATTATGAAATGCGATAAATGCCATATATATATATATATATATATATATATATATATATATATATATATATATATATTGAGATCAGAAGCAATTTGCAAAATAAAACAATGGGAAGGCAACCCAAATTGGTTCACAGAAATATTTGAGTCGGAAGTGACCTACGGAATGTGAACAACAGAATTTCAATATGCTTCGAACGGTGGCTGTTTGAAGTTACTCAATGAGTATAGAAGATACGGTAATACAGCCACTTAGAAAGCCACAGAGAAAATGAATTGTCGAATT]




>consensus_3868#1
ACATTTACTTTTCATGAAGTGTTGACCAGAAAAAAATTCATTATTAGAAAATACCATAAG
TGAAATGAATGTTGAAAAAAAAGCAATTTAATTCATCCCAACATAAAATACTTATATGTT
GTAAAACAGAACAAGCCAAAATATGAAGGATACTTTAGGTAGAAGGTAATCAATTATGCA
GAATTTTAATGCATGATTATGAAATGCGATAAATGCCATATATATATATATATATATATA
TATATATATATATATATATATATATATATATTGAGATCAGAAGCAATTTGCAAAATAAAA
CAATGGGAAGGCAACCCAAATTGGTTCACAGAAATATTTGAGTCGGAAGTGACCTACGGA
ATGTGAACAACAGAATTTCAATATGCTTCGAACGGTGGCTGTTTGAAGTTACTCAATGAG
TATAGAAGATACGGTAATACAGCCACTTAGAAAGCCACAGAGAAAATGAATTGTCGAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3868#0      ------------------------------------------------------------
consensus_3868#1      ACATTTACTTTTCATGAAGTGTTGACCAGAAAAAAATTCATTATTAGAAAATACCATAAG 60
                                                                                  

consensus_3868#0      ------------------------------------------------------------
consensus_3868#1      TGAAATGAATGTTGAAAAAAAAGCAATTTAATTCATCCCAACATAAAATACTTATATGTT 120
                                                                                  

consensus_3868#0      -------------------------------------------------------ATGCA 5
consensus_3868#1      GTAAAACAGAACAAGCCAAAATATGAAGGATACTTTAGGTAGAAGGTAATCAATTATGCA 180
                                                                             *****

consensus_3868#0      GAATTTTAATGCATGATTATGAAATGCGATAAATGCCATATATATATATATATATATAT- 64
consensus_3868#1      GAATTTTAATGCATGATTATGAAATGCGATAAATGCCATATATATATATATATATATATA 240
                      *********************************************************** 

consensus_3868#0      -------------------------------TGAGATCAGAAGCAATTTGCAAAATAAAA 93
consensus_3868#1      TATATATATATATATATATATATATATATATTGAGATCAGAAGCAATTTGCAAAATAAAA 300
                                                     *****************************

consensus_3868#0      CAATGGGAAGACAACCCAAATTGGTTCACAGAAATATTTGAGTCGGAAGTGACGTAGGGA 153
consensus_3868#1      CAATGGGAAGGCAACCCAAATTGGTTCACAGAAATATTTGAGTCGGAAGTGACCTACGGA 360
                      ********** ****************************************** ** ***

consensus_3868#0      ATGTGAACAACAGAATTTCAATATGCTTCGAACGGTGGCTGTTTGAAGTTACTCAATGAG 213
consensus_3868#1      ATGTGAACAACAGAATTTCAATATGCTTCGAACGGTGGCTGTTTGAAGTTACTCAATGAG 420
                      ************************************************************

consensus_3868#0      TATAGAAGATACGGTAATACAGCCACTTAGAACGCCACAGAGAAAATGAATTGTCGAATT 273
consensus_3868#1      TATAGAAGATACGGTAATACAGCCACTTAGAAAGCCACAGAGAAAATGAATTGTCGAATT 480
                      ******************************** ***************************

consensus_3868#0      TGAACACATAAACACCAACACCTGGATACTGATGGGTACCACAATAAACTTCTGTATGAC 333
consensus_3868#1      ------------------------------------------------------------
                                                                                  

consensus_3868#0      AATCCCTTCTATAGATTGGTATAAGTTCATCAATAGGTAAACGCTGTTGTAATGACTTTT 393
consensus_3868#1      ------------------------------------------------------------
                                                                                  

consensus_3868#0      TGCCTAATTCCAAATCATGAGATTCTTTATTTTCGTTTTTAGGCGACGTTTGCTCCACAG 453
consensus_3868#1      ------------------------------------------------------------
                                                                                  

consensus_3868#0      AATTTCCACTATTAGGTCCTTCTTCATCCTC 484
consensus_3868#1      -------------------------------