cluster # 3900

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Schistosoma mansoni
cluster # 3900 cluster # 3900 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3900#0 length = 487 sequences # 1

consensus_3900#1 length = 436 sequences # 1

consensusID : consensus_3900#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 487
fasta sequence

                              [GATGAGAATGCCGATGATGATAATCATGGGGAAGATAATGAATTTGACGCGTTTCCTTTAGACGATGTATTATCAGTTAATGTTACAAACCCTGTTACTTTTCAAATGAATCATTTGATGAATAAGCGTATTGTAATGAAACATAAATCTGTTGTCGACAATAATAATAAGAATATTTTGTCTGCCAATCACTTGATTAAATCTCAAGTTTCCTCTTCCACTACTACTACTAATTGTAGTGTTGGTAGTAGTGCAGCTACAAATTCCGTCAATCAAAATAGTAATGACAATGATATTAATGGCAGTAGTAGTAATCGTAATGCGGGAAAGAAGCCGGAATTCTATTTTAGTGTTAGCGCACTTCCAGCTTGGGCACGTAGAAAGGTTTTGAATAGTGAATTTGACGTGAATGGATCAGATTCAGCTAGTCAAACCTCTGTAGGAAGTGGTCCAATATTGCCTGTATCGACTAGATGTTCTGGTTCCC]

[+] EMBL CD127844             [GATGAGAATGCCGATGATGATAATCATGGGGAAGATAATGAATTTGACGCGTTTCCTTTAGACGATGTATTATCAGTTAATGTTACAAACCCTGTTACTTTTCAAATGAATCATTTGATGAATAAGCGTATTGTAATGAAACATAAATCTGTTGTCGACAATAATAATAAGAATATTTTGTCTGCCAATCACTTGATTAAATCTCAAGTTTCCTCTTCCACTACTACTACTAATTGTAGTGTTGGTAGTAGTGCAGCTACAAATTCCGTCAATCAAAATAGTAATGACAATGATATTAATGGCAGTAGTAGTAATCGTAATGCGGGAAAGAAGCCGGAATTCTATTTTAGTGTTAGCGCACTTCCAGCTTGGGCACGTAGAAAGGTTTTGAATAGTGAATTTGACGTGAATGGATCAGATTCAGCTAGTCAAACCTCTGTAGGAAGTGGTCCAATATTGCCTGTATCGACTAGATGTTCTGGTTCCC]




>consensus_3900#0
GATGAGAATGCCGATGATGATAATCATGGGGAAGATAATGAATTTGACGCGTTTCCTTTA
GACGATGTATTATCAGTTAATGTTACAAACCCTGTTACTTTTCAAATGAATCATTTGATG
AATAAGCGTATTGTAATGAAACATAAATCTGTTGTCGACAATAATAATAAGAATATTTTG
TCTGCCAATCACTTGATTAAATCTCAAGTTTCCTCTTCCACTACTACTACTAATTGTAGT
GTTGGTAGTAGTGCAGCTACAAATTCCGTCAATCAAAATAGTAATGACAATGATATTAAT
GGCAGTAGTAGTAATCGTAATGCGGGAAAGAAGCCGGAATTCTATTTTAGTGTTAGCGCA
CTTCCAGCTTGGGCACGTAGAAAGGTTTTGAATAGTGAATTTGACGTGAATGGATCAGAT
TCAGCTAGTCAAACCTCTGTAGGAAGTGGTCCAATATTGCCTGTATCGACTAGATGTTCT
GGTTCCC

consensusID : consensus_3900#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence

                              [ACCCCAACCTCTTTGACACAGGTTTTGAATAGTGAATTTGACGTGAATGGATCAGATTCAGCTAGTCAAACCTCTGTAGGAAGTGGTCCAATATTGCCTGTATCGACTAGATGTTCTGGTTCCCATGAAACAATACCTAACTATGTTTATCCATTGTCATCGTCAGTCACAGCAGCAAACAGAAAATCAAAATTTACTCGTGTTCGTGGCAAAACATCAACTGACGACATTTCTAAAAGAGATATATTAACACCAGTGTTTTGTGCTACCACTACTACTGTTGTATCATCATCTGTTTCACAATCGACAATCTCAACCAATAACCATAATCATACACTTCTTCACAAATGTCTCGATCAGAATACAACACTAGAGAATATTTTCATTTTCATCCGAATGATGAAATCAATTCTAACGAACAAATTACTCATGAAAG]

[+] EMBL CD139335             [ACCCCAACCTCTTTGACACAGGTTTTGAATAGTGAATTTGACGTGAATGGATCAGATTCAGCTAGTCAAACCTCTGTAGGAAGTGGTCCAATATTGCCTGTATCGACTAGATGTTCTGGTTCCCATGAAACAATACCTAACTATGTTTATCCATTGTCATCGTCAGTCACAGCAGCAAACAGAAAATCAAAATTTACTCGTGTTCGTGGCAAAACATCAACTGACGACATTTCTAAAAGAGATATATTAACACCAGTGTTTTGTGCTACCACTACTACTGTTGTATCATCATCTGTTTCACAATCGACAATCTCAACCAATAACCATAATCATACACTTCTTCACAAATGTCTCGATCAGAATACAACACTAGAGAATATTTTCATTTTCATCCGAATGATGAAATCAATTCTAACGAACAAATTACTCATGAAAG]




>consensus_3900#1
ACCCCAACCTCTTTGACACAGGTTTTGAATAGTGAATTTGACGTGAATGGATCAGATTCA
GCTAGTCAAACCTCTGTAGGAAGTGGTCCAATATTGCCTGTATCGACTAGATGTTCTGGT
TCCCATGAAACAATACCTAACTATGTTTATCCATTGTCATCGTCAGTCACAGCAGCAAAC
AGAAAATCAAAATTTACTCGTGTTCGTGGCAAAACATCAACTGACGACATTTCTAAAAGA
GATATATTAACACCAGTGTTTTGTGCTACCACTACTACTGTTGTATCATCATCTGTTTCA
CAATCGACAATCTCAACCAATAACCATAATCATACACTTCTTCACAAATGTCTCGATCAG
AATACAACACTAGAGAATATTTTCATTTTCATCCGAATGATGAAATCAATTCTAACGAAC
AAATTACTCATGAAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3900#0      GATGAGAATGCCGATGATGATAATCATGGGGAAGATAATGAATTTGACGCGTTTCCTTTA 60
consensus_3900#1      -ACCCCAACCTCTTTGACACAGGTTTTGA-----ATAGTGAATTTGACGTGAATGGATCA 54
                       *    **   *  ***      *  **      *** *********** *  *   * *

consensus_3900#0      GACGATGTATTATCAGTTAATGTTACAAACCCTGTTACTTTTCAAATGAATCATTTGATG 120
consensus_3900#1      GATTCAGCTAGTCAAACCTCTGTAGGAAGTGGTCCAATATTGCCTGT-ATCGACTAGATG 113
                      **    *       *     ***   **    *   *  ** *   * *   * * ****

consensus_3900#0      AATAAGCGTAT-TGTAATGAAACATAAATCTGTT-GTCGACAATAATAATAAGAATATTT 178
consensus_3900#1      TTCTGGTTCCCATGAAACAATACCTAACTATGTTTATCCATTGTCATCGTCAG----TCA 169
                           *      ** **  * ** *** * ****  ** *   * **  * **    *  

consensus_3900#0      TGTCTGCCAATCACTTGATTAAATCTCAAGTTTCCTCTTC-CACTACTACTACTAATTGT 237
consensus_3900#1      CAGCAGC-AAACAGAAAATCAAAATTTACTCGTGTTCGTGGCAAAACATCAACTGACGAC 228
                         * ** ** **    ** ***  * *    *  ** *  **  **  * *** *    

consensus_3900#0      AGTGTTGGTAGTAGTGCAGCTACAAATTCCGTCAATCAAAATAGTAATGACAATGATATT 297
consensus_3900#1      ATTTCTAAAAGAGATATATTAACACCAGTGTTTTGTGCTACCACTACT-ACTGTTGTATC 287
                      * *  *   **   *  *   ***       *   *   *  * ** * **  *  *** 

consensus_3900#0      AATGGCAGTAGTAGTAATCGTAATGCGGGAAAGAAGCCGGAATTCTATTTTAGTGTTAGC 357
consensus_3900#1      ATCATCTGTTTCACAATCGACAATCTCAACCAATAACCATAATCATACACT--TCTTCAC 345
                      *    * **   *  *     ***       *  * **  ***  **   *  * **  *

consensus_3900#0      GCACTTCCAGCTTGGG-CACG----TAGAAAGGTTTTGAATAGTGAATTTGACGTGAATG 412
consensus_3900#1      AAATGTCTCGATCAGAATACAACACTAGAGAATATTTTCATT-TTCATCCGA-ATGATGA 403
                        *  **  * *  *   **     **** *   ***  **  *  **  **  ***   

consensus_3900#0      GATCAGATTCAGCTAGTCAAACCTCTGTAGGAAGTGGTCCAATATTGCCTGTATCGACTA 472
consensus_3900#1      AATCAATTCTAACGAA-CAAATTACTCATGAAAG-------------------------- 436
                       ****  *  * * *  ****   **   * ***                          

consensus_3900#0      GATGTTCTGGTTCCC 487
consensus_3900#1      ---------------