cluster # 3903

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Schistosoma mansoni
cluster # 3903 cluster # 3903 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3903#0 length = 809 sequences # 1

consensus_3903#1 length = 421 sequences # 1

consensusID : consensus_3903#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 809
fasta sequence

                              [CTTCCCTGTGTATTTATGTGCTCCAATCCTATTATTAGCCTATGCCTTGCCTAGTTGCGGCTTATTCGATTTGACTGTAAATTTGCCTCGGTATTTGCTCGCATACATATTCACCTCTCTGTTTCAAATTCGCTCGATGTGCTTATAGCCTTGTGATCTGTGCTGTCCTCTAATAAACTGCAGTTGCCACTTTTCATTGCCTTCTGATTTCAAACACTATAGGATTTATATAACAACATTTATCAAGGTGATTGACTAACGAAGCTAAGTCACCACAATTGAAATAGTAAAGCGTCATTGAGATCATTCATTTGCTACTCTGATCAGTGGCTTGTNGGAGTGGGAATGGGTATGACCTATCACTCATGTGACANAAGAAAGGAGGNGTTTACTGTTTATTATTACTCCTAATCTGGCCATTATATTCTACAAACTAACCCGGAAAAAAACCCAGGGACCAACCCCCTTTATGGTTCCAAAACCGGAAGAACTTATGGCCGGGCCATGGGAATAAACCCCAAACCTTTGCCCAAAAAAACTTTTATATTTTTCCCTTCCCCCAAATTTATGGGCCCCTTTTTTTTAACCCCCCATTTACCACTAAAATTTTCCCACCCCTTAAAAAAAGGGGAGGTGCCCCCCGGATATTAAAACGCCCCCCCCCCCAATTACACCCTGTGTTTTCTCTGGGGAGAGGGGGCCAAAAACGCGGGTTTTATAAAAAATGGCGCCCCCCCTTTTGCGAGAAAATAATTTTTTTCCCCCGGAAAAAAAAAGAAAGGGCCCCCCCCCCCCCGCTTGTTTTTTTN]

[+] EMBL CD079330             [CTTCCCTGTGTATTTATGTGCTCCAATCCTATTATTAGCCTATGCCTTGCCTAGTTGCGGCTTATTCGATTTGACTGTAAATTTGCCTCGGTATTTGCTCGCATACATATTCACCTCTCTGTTTCAAATTCGCTCGATGTGCTTATAGCCTTGTGATCTGTGCTGTCCTCTAATAAACTGCAGTTGCCACTTTTCATTGCCTTCTGATTTCAAACACTATAGGATTTATATAACAACATTTATCAAGGTGATTGACTAACGAAGCTAAGTCACCACAATTGAAATAGTAAAGCGTCATTGAGATCATTCATTTGCTACTCTGATCAGTGGCTTGTNGGAGTGGGAATGGGTATGACCTATCACTCATGTGACANAAGAAAGGAGGNGTTTACTGTTTATTATTACTCCTAATCTGGCCATTATATTCTACAAACTAACCCGGAAAAAAACCCAGGGACCAACCCCCTTTATGGTTCCAAAACCGGAAGAACTTATGGCCGGGCCATGGGAATAAACCCCAAACCTTTGCCCAAAAAAACTTTTATATTTTTCCCTTCCCCCAAATTTATGGGCCCCTTTTTTTTAACCCCCCATTTACCACTAAAATTTTCCCACCCCTTAAAAAAAGGGGAGGTGCCCCCCGGATATTAAAACGCCCCCCCCCCCAATTACACCCTGTGTTTTCTCTGGGGAGAGGGGGCCAAAAACGCGGGTTTTATAAAAAATGGCGCCCCCCCTTTTGCGAGAAAATAATTTTTTTCCCCCGGAAAAAAAAAGAAAGGGCCCCCCCCCCCCCGCTTGTTTTTTTN]




>consensus_3903#0
CTTCCCTGTGTATTTATGTGCTCCAATCCTATTATTAGCCTATGCCTTGCCTAGTTGCGG
CTTATTCGATTTGACTGTAAATTTGCCTCGGTATTTGCTCGCATACATATTCACCTCTCT
GTTTCAAATTCGCTCGATGTGCTTATAGCCTTGTGATCTGTGCTGTCCTCTAATAAACTG
CAGTTGCCACTTTTCATTGCCTTCTGATTTCAAACACTATAGGATTTATATAACAACATT
TATCAAGGTGATTGACTAACGAAGCTAAGTCACCACAATTGAAATAGTAAAGCGTCATTG
AGATCATTCATTTGCTACTCTGATCAGTGGCTTGTNGGAGTGGGAATGGGTATGACCTAT
CACTCATGTGACANAAGAAAGGAGGNGTTTACTGTTTATTATTACTCCTAATCTGGCCAT
TATATTCTACAAACTAACCCGGAAAAAAACCCAGGGACCAACCCCCTTTATGGTTCCAAA
ACCGGAAGAACTTATGGCCGGGCCATGGGAATAAACCCCAAACCTTTGCCCAAAAAAACT
TTTATATTTTTCCCTTCCCCCAAATTTATGGGCCCCTTTTTTTTAACCCCCCATTTACCA
CTAAAATTTTCCCACCCCTTAAAAAAAGGGGAGGTGCCCCCCGGATATTAAAACGCCCCC
CCCCCCAATTACACCCTGTGTTTTCTCTGGGGAGAGGGGGCCAAAAACGCGGGTTTTATA
AAAAATGGCGCCCCCCCTTTTGCGAGAAAATAATTTTTTTCCCCCGGAAAAAAAAAGAAA
GGGCCCCCCCCCCCCCGCTTGTTTTTTTN

consensusID : consensus_3903#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 421
fasta sequence

                              [TCACCACAATTGAAATAGTAAAGCGTCATTGAGATCATTCATTTGCTACTCTGATCAGTGGCTTGTGGGAGTGGGAATGGGTATGACCTATCACTCATGTGACAAAAGAAAGGAGGGGTTTACTGTTTATTATTACTCCTAATCTGGTCATTATAATCTACAAACTAAACAAGAAAAAAACAAGGGACCAACCCATCATTTTCTGTCGGAAAAATCATGCGGTCAATGAATAGACAAACTATGCGAAAAACTTTATTTTCCATCCCAACTATCGTCCTTTTTTAACCACATCTACATCAATTCCAACCTTAATAATGATGTTCCTGATATAAAGCATACATAATTAGCTTGTTTTCTGTGATTGGCAATACTGTTTATAGATTGCAGACATATGAAAATAATTAGCGAAATAAATGAACTC]

[-] EMBL CD073607             [TCACCACAATTGAAATAGTAAAGCGTCATTGAGATCATTCATTTGCTACTCTGATCAGTGGCTTGTGGGAGTGGGAATGGGTATGACCTATCACTCATGTGACAAAAGAAAGGAGGGGTTTACTGTTTATTATTACTCCTAATCTGGTCATTATAATCTACAAACTAAACAAGAAAAAAACAAGGGACCAACCCATCATTTTCTGTCGGAAAAATCATGCGGTCAATGAATAGACAAACTATGCGAAAAACTTTATTTTCCATCCCAACTATCGTCCTTTTTTAACCACATCTACATCAATTCCAACCTTAATAATGATGTTCCTGATATAAAGCATACATAATTAGCTTGTTTTCTGTGATTGGCAATACTGTTTATAGATTGCAGACATATGAAAATAATTAGCGAAATAAATGAACTC]




>consensus_3903#1
TCACCACAATTGAAATAGTAAAGCGTCATTGAGATCATTCATTTGCTACTCTGATCAGTG
GCTTGTGGGAGTGGGAATGGGTATGACCTATCACTCATGTGACAAAAGAAAGGAGGGGTT
TACTGTTTATTATTACTCCTAATCTGGTCATTATAATCTACAAACTAAACAAGAAAAAAA
CAAGGGACCAACCCATCATTTTCTGTCGGAAAAATCATGCGGTCAATGAATAGACAAACT
ATGCGAAAAACTTTATTTTCCATCCCAACTATCGTCCTTTTTTAACCACATCTACATCAA
TTCCAACCTTAATAATGATGTTCCTGATATAAAGCATACATAATTAGCTTGTTTTCTGTG
ATTGGCAATACTGTTTATAGATTGCAGACATATGAAAATAATTAGCGAAATAAATGAACT
C

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3903#0      CTTCCCTGTGTATTTATGTGCTCCAATCCTATTATTAGCCTATGCCTTGCCTAGTTGCGG 60
consensus_3903#1      ------------------------------------------------------------
                                                                                  

consensus_3903#0      CTTATTCGATTTGACTGTAAATTTGCCTCGGTATTTGCTCGCATACATATTCACCTCTCT 120
consensus_3903#1      ------------------------------------------------------------
                                                                                  

consensus_3903#0      GTTTCAAATTCGCTCGATGTGCTTATAGCCTTGTGATCTGTGCTGTCCTCTAATAAACTG 180
consensus_3903#1      ------------------------------------------------------------
                                                                                  

consensus_3903#0      CAGTTGCCACTTTTCATTGCCTTCTGATTTCAAACACTATAGGATTTATATAACAACATT 240
consensus_3903#1      ------------------------------------------------------------
                                                                                  

consensus_3903#0      TATCAAGGTGATTGACTAACGAAGCTAAGTCACCACAATTGAAATAGTAAAGCGTCATTG 300
consensus_3903#1      -----------------------------TCACCACAATTGAAATAGTAAAGCGTCATTG 31
                                                   *******************************

consensus_3903#0      AGATCATTCATTTGCTACTCTGATCAGTGGCTTGTNGGAGTGGGAATGGGTATGACCTAT 360
consensus_3903#1      AGATCATTCATTTGCTACTCTGATCAGTGGCTTGTGGGAGTGGGAATGGGTATGACCTAT 91
                      *********************************** ************************

consensus_3903#0      CACTCATGTGACANAAGAAAGGAGGNGTTTACTGTTTATTATTACTCCTAATCTGGCCAT 420
consensus_3903#1      CACTCATGTGACAAAAGAAAGGAGGGGTTTACTGTTTATTATTACTCCTAATCTGGTCAT 151
                      ************* *********** ****************************** ***

consensus_3903#0      TATATTCTACAAACTAACCCGGAAAAAAACCCAGGGACCAACCCCCTTTATGGTTCCAAA 480
consensus_3903#1      TATAATCTACAAACTAAACAAGAAAAAAACA-AGGGACCAACCCATCATTTTCT------ 204
                      **** ************ *  *********  ************    * *  *      

consensus_3903#0      ACCGGAAGAACTTATGGCCGGGCCATGGGAATAAACCCCAAACCTTTGCCCAAAAAAACT 540
consensus_3903#1      GTCGGAAAAA-TCATG--CGGTCAATG--AATAGAC----AAACTATGC---GAAAAACT 252
                        ***** ** * ***  *** * ***  **** **    ** ** ***    *******

consensus_3903#0      TTTATATTTTTCCCTTCCCCCAAATTTATGGGCCCCTTTTTTTTAACCCCCCAT---TTA 597
consensus_3903#1      TTA-----TTTTCCATCCC----AACTATCGTCCTTTTTTAACCACATCTACATCAATTC 303
                      **      *** ** ****    *  *** * **  ****    *   *  ***   ** 

consensus_3903#0      CCACTAAAATTTTCCCACCCCTTAAAAAAAGGGGAGGTGCCCCCCGGATATTAAAACGCC 657
consensus_3903#1      CAACCTTAATAATGATGTTCCTGATATAAAGCATACATAATTAGCTTGTTTTCTGTGATT 363
                      * **   ***  *      *** * * ****   *  *      *   * **        

consensus_3903#0      CCCCCCCCCAATTACACCCTGTGTTTTCTCTGGGGAGAGGGGGCCAAAAACGCGGGTTTT 717
consensus_3903#1      GGCAATACTGTTTATAGATTGCAGACA-TATGAAAATAATTAGCGAAATAAATGAACTC- 421
                        *    *   *** *   **       * **   * *    ** *** *   *   *  

consensus_3903#0      ATAAAAAATGGCGCCCCCCCTTTTGCGAGAAAATAATTTTTTTCCCCCGGAAAAAAAAAG 777
consensus_3903#1      ------------------------------------------------------------
                                                                                  

consensus_3903#0      AAAGGGCCCCCCCCCCCCCGCTTGTTTTTTTN 809
consensus_3903#1      --------------------------------