These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3913#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence [AAACTCACCTTGTTAGCAAAAGTCCCTGTAATTTAAACTAACTATCCTTCCAAATCCATCTATCTAACCTTATTATGTAGGTACCCAGACTGAGATAGTAAGTTTGGTCTTATATTCACCATCTTTCATTATATATACTTTTATGATCCACATTTTGATAGATTTTTGATTCATAGGTAGCACAAAAAAAACCTGTTCACTATCTCGCCTACTTTCGTTTAAACAAATGGGCACCACCAGTAATCCTTAAAATGATAACTAAAAGGTAAGTATATAAGCTTGTACTTAGGCATCTGAGCCTGAATGAAACAAACTGTATTGATGTCGCGATTGGCAATATATATGAGCATTAATCATGGGTATTTGTCACTTAAACTAATGGGTTCTGGTTCTTTATATATTGCACTCATGCTCGTACAATTTGAAACCCGTCAGCAGGGTAGCAGATAAGGCATTCAATTTATCGTCTGTGCTCTTCAGCGTCCCTCTGTTGTTATTCCCATTTGGCTTATTACTGGTTGATGCTTTGAA] [+] EMBL CD180603 [AAACTCACCTTGTTAGCAAAAGTCCCTGTAATTTAAACTAACTATCCTTCCAAATCCATCTATCTAACCTTATTATGTAGGTACCCAGACTGAGATAGTAAGTTTGGTCTTATATTCACCATCTTTCATTATATATACTTTTATGATCCACATTTTGATAGATTTTTGATTCATAGGTAGCACAAAAAAAACCTGTTCACTATCTCGCCTACTTTCGTTTAAACAAATGGGCACCACCAGTAATCCTTAAAATGATAACTAAAAGGTAAGTATATAAGCTTGTACTTAGGCATCTGAGCCTGAATGAAACAAACTGTATTGATGTCGCGATTGGCAATATATATGAGCATTAATCATGGGTATTTGTCACTTAAACTAATGGGTTCTGGTTCTTTATATATTGCACTCATGCTCGTACAATTTGAAACCCGTCAGCAGGGTAGCAGATAAGGCATTCAATTTATCGTCTGTGCTCTTCAGCGTCCCTCTGTTGTTATTCCCATTTGGCTTATTACTGGTTGATGCTTTGAA] consensusID : consensus_3913#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence [TTAAATTACAGGGACTTTTGCTAACAAGGTGAGTTTTGAACTTGAGTCACAAGCCAAACACATTATTCATCTAAAATGCTTATCGAGAACCTAATTAGATACGAAAGAATTATTGGTTCAGACATGCCAAGTAGAACAGGATTTCTGGTGAGGGCATGTAAGCGTGGAACAACAAGTCTCCACATTTGCCTAGAAGATTCTCTTCACATAAAGATAATTTCTTAACTAGAGAGTCCAGCGCATAAAACTGAGCTTCGTTCTTGAGTGAATTAATGTCTACGCCATTAAGATTGACCTCACTAGTTCGTAGGTAGTTGAGAATGACGCTGAACATATCTGGATCTCTGTCTAT] [+] EMBL CD178680 [TTAAATTACAGGGACTTTTGCTAACAAGGTGAGTTTTGAACTTGAGTCACAAGCCAAACACATTATTCATCTAAAATGCTTATCGAGAACCTAATTAGATACGAAAGAATTATTGGTTCAGACATGCCAAGTAGAACAGGATTTCTGGTGAGGGCATGTAAGCGTGGAACAACAAGTCTCCACATTTGCCTAGAAGATTCTCTTCACATAAAGATAATTTCTTAACTAGAGAGTCCAGCGCATAAAACTGAGCTTCGTTCTTGAGTGAATTAATGTCTACGCCATTAAGATTGACCTCACTAGTTCGTAGGTAGTTGAGAATGACGCTGAACATATCTGGATCTCTGTCTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3913#0 AAACTCACCTTGTTAGCAAAAGTCCCTGTAATTTAAACTAACTATCCTTCCAAATCCATC 60 consensus_3913#1 ------------------------------------------------TTAAATTACAGG 12 * ** * ** consensus_3913#0 TATCTAACCTTATTATGTAGGTACCCAGACTGAGATAGTAAGTTTGGTCTTATATTCACC 120 consensus_3913#1 GACTTTTGCTAACAAGGTGAGT-TTTGAACTTGAGTCACAAGCCAAACACATTATTCATC 71 * * ** * * ** ** *** * *** ****** * consensus_3913#0 ATCTTTCATTATATATACTTTTATGATCCACATTTTGATAGATTTTTGATTCATAGGTAG 180 consensus_3913#1 TAAAATGCTTATCGAGAACCTAAT----TAGATACGAAAGAATTATTGGTTCAGACATGC 127 * **** * * * ** * ** * *** *** **** * * consensus_3913#0 CACAAAAAAAACCTGTTCACTATCTCGCCTACTTTCGTTTAAACAAATGGGCACCACCAG 240 consensus_3913#1 C--AAGTAGAACAGGATTTCTGGTGAGGGCATGTAAGCGTGGAACAACAAGTCTCCACAT 185 * ** * *** * * ** * * * * * * ** * * ** consensus_3913#0 TAATCCTTAAAATGATAACTA---AAAGGTAAGTATATAAGCTTGTACTTAGGCATCTGA 297 consensus_3913#1 TTGCCTAGAAGATTCTCTTCACATAAAGATAATTTCTTAACTAGAGAGTCCAGCGCATAA 245 * * ** ** * * **** *** * *** * * ** * * consensus_3913#0 GCCTGAAT---GAAACAAACTGTATTGATGTCGCGATTGGCAATATATATGAGCATTAAT 354 consensus_3913#1 AACTGAGCTTCGTTCTTGAGTGAATTAATGTCTACGCCATTAAGATTGACCTCACTAGTT 305 **** * * ** *** ***** ** ** * * * consensus_3913#0 CATGGGTATTTGTCACTTAAACTAATGGGTTCTGGTTCTTTATATATTGCACTCATGCTC 414 consensus_3913#1 CGTAGGTAGTTGAGAATGACGCTGAACATATCTGGATCTCTGTCTAT------------- 352 * * **** *** * * * ** * ***** *** * * *** consensus_3913#0 GTACAATTTGAAACCCGTCAGCAGGGTAGCAGATAAGGCATTCAATTTATCGTCTGTGCT 474 consensus_3913#1 ------------------------------------------------------------ consensus_3913#0 CTTCAGCGTCCCTCTGTTGTTATTCCCATTTGGCTTATTACTGGTTGATGCTTTGAA 531 consensus_3913#1 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||