cluster # 3917

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 3917 cluster # 3917 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3917#0 length = 545 sequences # 1

consensus_3917#1 length = 541 sequences # 1

consensusID : consensus_3917#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 545
fasta sequence

                              [ATCTTAATATTTCACAAGATATATCAAAGGGTACAACAATCAATGTATCAATGAATGTTAAACAACTTTTAGATCAATCCCTACAATGTCCAGTGAAATCTGCTTATGATCGTATTATTGTTCGAATTTATCGATTATGGAAGGATGTCAGTGGTTTAGCTTGGTTAGAAGGTGGTTTATTTCTCCGTCCATATGATTTACCTCCAATATCGGCAATAACTGATTCATCAAAGTGTCCACAATTTTGGCATCTTGATGAAGTTGTCTACGATGAGGCTAGACGTGTTATTCTTCCATTGGACGCTTGGATTGGTAGATGTATGGTGTTATGCCCTTCAGCATAAAGAGTTGGCAGACCTGCTGATTTACTATACACAGCACATATAAAAGAATTTATGCCATCACTGAAAAATTACAATCTGAATGATTCCAATCCTACTACAAATCAGTTTCAATATTTCTTTGTTTGTGAAAAATTATTTGAACAATCATCAGTTGATAATCATACTTGTAGATTTGATGAAATATCTCCTGGTTACTTAAAA]

[+] EMBL CD190834             [ATCTTAATATTTCACAAGATATATCAAAGGGTACAACAATCAATGTATCAATGAATGTTAAACAACTTTTAGATCAATCCCTACAATGTCCAGTGAAATCTGCTTATGATCGTATTATTGTTCGAATTTATCGATTATGGAAGGATGTCAGTGGTTTAGCTTGGTTAGAAGGTGGTTTATTTCTCCGTCCATATGATTTACCTCCAATATCGGCAATAACTGATTCATCAAAGTGTCCACAATTTTGGCATCTTGATGAAGTTGTCTACGATGAGGCTAGACGTGTTATTCTTCCATTGGACGCTTGGATTGGTAGATGTATGGTGTTATGCCCTTCAGCATAAAGAGTTGGCAGACCTGCTGATTTACTATACACAGCACATATAAAAGAATTTATGCCATCACTGAAAAATTACAATCTGAATGATTCCAATCCTACTACAAATCAGTTTCAATATTTCTTTGTTTGTGAAAAATTATTTGAACAATCATCAGTTGATAATCATACTTGTAGATTTGATGAAATATCTCCTGGTTACTTAAAA]




>consensus_3917#0
ATCTTAATATTTCACAAGATATATCAAAGGGTACAACAATCAATGTATCAATGAATGTTA
AACAACTTTTAGATCAATCCCTACAATGTCCAGTGAAATCTGCTTATGATCGTATTATTG
TTCGAATTTATCGATTATGGAAGGATGTCAGTGGTTTAGCTTGGTTAGAAGGTGGTTTAT
TTCTCCGTCCATATGATTTACCTCCAATATCGGCAATAACTGATTCATCAAAGTGTCCAC
AATTTTGGCATCTTGATGAAGTTGTCTACGATGAGGCTAGACGTGTTATTCTTCCATTGG
ACGCTTGGATTGGTAGATGTATGGTGTTATGCCCTTCAGCATAAAGAGTTGGCAGACCTG
CTGATTTACTATACACAGCACATATAAAAGAATTTATGCCATCACTGAAAAATTACAATC
TGAATGATTCCAATCCTACTACAAATCAGTTTCAATATTTCTTTGTTTGTGAAAAATTAT
TTGAACAATCATCAGTTGATAATCATACTTGTAGATTTGATGAAATATCTCCTGGTTACT
TAAAA

consensusID : consensus_3917#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 541
fasta sequence

                              [GGTGGAGGTAATACAGGCGAGGTAGATGTGAAAGGTGAAGATGATCGAGAAGTTGATGCTCCTTATATATGTCCAGTGTGCTTGAAGTTGGATAATTTAACAAAAGAATATCCTCGTTCATTATCTGCAGCGATGAGTTTAAACGATGTAGATGCTGTATTTGACTTACAAGATACACTAGTGAAAGGTGAACATGAATTTTGGACATTGGGTAGTCCTGATGGAACTTGTCAAATACGTACAGATGATTATGCATTTGTTAATCGTTTCTGGTTAAATCATCTTAATATTTCACAAGATATATCAAAGGGTACAACAATCAATGTATCAATGAATGTTAAACAACTTTTAGATCAATCCCTACAATGTCCAGTGAAATCTGCTTATGATCGTATTATTGTTCGAATTTATCGATTATGGAAGGATGTCAGGTTAAAAGTTTTTTTTTATTGTAGTAGTAGTTTTTGCTTTTTTTGGATTGTTCAAGTGGACAGGAGTTCTCAACAGGACACCGGCCTTGATCAAGTTCTCATGCTCATCA]

[-] EMBL CD127906             [GGTGGAGGTAATACAGGCGAGGTAGATGTGAAAGGTGAAGATGATCGAGAAGTTGATGCTCCTTATATATGTCCAGTGTGCTTGAAGTTGGATAATTTAACAAAAGAATATCCTCGTTCATTATCTGCAGCGATGAGTTTAAACGATGTAGATGCTGTATTTGACTTACAAGATACACTAGTGAAAGGTGAACATGAATTTTGGACATTGGGTAGTCCTGATGGAACTTGTCAAATACGTACAGATGATTATGCATTTGTTAATCGTTTCTGGTTAAATCATCTTAATATTTCACAAGATATATCAAAGGGTACAACAATCAATGTATCAATGAATGTTAAACAACTTTTAGATCAATCCCTACAATGTCCAGTGAAATCTGCTTATGATCGTATTATTGTTCGAATTTATCGATTATGGAAGGATGTCAGGTTAAAAGTTTTTTTTTATTGTAGTAGTAGTTTTTGCTTTTTTTGGATTGTTCAAGTGGACAGGAGTTCTCAACAGGACACCGGCCTTGATCAAGTTCTCATGCTCATCA]




>consensus_3917#1
GGTGGAGGTAATACAGGCGAGGTAGATGTGAAAGGTGAAGATGATCGAGAAGTTGATGCT
CCTTATATATGTCCAGTGTGCTTGAAGTTGGATAATTTAACAAAAGAATATCCTCGTTCA
TTATCTGCAGCGATGAGTTTAAACGATGTAGATGCTGTATTTGACTTACAAGATACACTA
GTGAAAGGTGAACATGAATTTTGGACATTGGGTAGTCCTGATGGAACTTGTCAAATACGT
ACAGATGATTATGCATTTGTTAATCGTTTCTGGTTAAATCATCTTAATATTTCACAAGAT
ATATCAAAGGGTACAACAATCAATGTATCAATGAATGTTAAACAACTTTTAGATCAATCC
CTACAATGTCCAGTGAAATCTGCTTATGATCGTATTATTGTTCGAATTTATCGATTATGG
AAGGATGTCAGGTTAAAAGTTTTTTTTTATTGTAGTAGTAGTTTTTGCTTTTTTTGGATT
GTTCAAGTGGACAGGAGTTCTCAACAGGACACCGGCCTTGATCAAGTTCTCATGCTCATC
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3917#0      -ATCTTAATATTTCA--CAAGATA--TATCAAAGGGTACAACAATCAATGTATCAATGAA 55
consensus_3917#1      GGTGGAGGTAATACAGGCGAGGTAGATGTGAAAGGTGAAGATGATCGAGAAGTTGATGCT 60
                        *     ** * **  * ** **  * * *****  *  *  *** *    *  ***  

consensus_3917#0      TGTTAAACAACTTT--TAGATCAATCCCTACAATGTCCAGTGAAATCTGCTTATGATCGT 113
consensus_3917#1      CCTTATATATGTCCAGTGTGCTTGAAGTTGGATAATTTAACAAAA---GAATATCCTCGT 117
                        *** * *  *    *           *  *   *  *   ***   *  ***  ****

consensus_3917#0      ATTATTGTTCGAATTTATCGATTATGGAAGGATGTCAGTGGTTTAGCTTGGTTAGAAGGT 173
consensus_3917#1      -TCATTATCTGCAGCGATGAGTT--TAAACGATGTAGATGCTGTATTTGACTTACAAGAT 174
                       * *** *  * *   **   **    ** *****   ** * **  *   *** *** *

consensus_3917#0      GGTTTATTTCTCCGTCCATATGATTTACCTCCAATATCGGCAATAACTGATTCATCAAAG 233
consensus_3917#1      ACACTAGTGAAAGGTGAACATGAATT---TTGGACATTGGGTAGTCCTGATGGAACT--- 228
                          ** *     **  * **** **   *   * ** **  *   *****  * *    

consensus_3917#0      TGTCCACAATTTTGGCATCTTGATGAAGTTGTCTACGATGA--GGCTAGA-CGTGTTATT 290
consensus_3917#1      TGTCAAATACGTACAGATGATTATGCATTTGTTAATCGTTTCTGGTTAAATCATCTTAAT 288
                      **** *  *  *    **  * *** * ****  *   *    ** ** * * * *** *

consensus_3917#0      CTTCCATTGGACGCTTGGATTGGTAGATGTATGGTGTTATGCCCTTCAGCAT-AAAGAGT 349
consensus_3917#1      ATTTCACAAGATATATCAAAGGGTACAACAAT--CAATGTATCAATGAATGTTAAACAAC 346
                       ** **   **    *  *  **** *   **     * *  *  * *   * *** *  

consensus_3917#0      TGGCAGACCTGCTGATTTACTATACACAGC-ACATATAAAAGAATTTATGCCATCACTGA 408
consensus_3917#1      TTTTAGATCAATC--CCTACAATGTCCAGTGAAATCTGCTTATGATCGTATTATTGTTCG 404
                      *   *** *        *** **   ***  * ** *        *  *   **   *  

consensus_3917#0      AAAATTACAATCT--GAATGATTCCAATCCTAC--TACAAATCAGTTTCAATATT--TCT 462
consensus_3917#1      AATTTATCGATTATGGAAGGATGTCAGGTTAAAAGTTTTTTTTTATTGTAGTAGTAGTTT 464
                      **  *  * **    *** ***  **     *   *     *   **  * ** *  * *

consensus_3917#0      TTGTTTGTGAAAAATTATTTGAACAATCATCAGTTGATAATCATACTTGTAGATTTGATG 522
consensus_3917#1      TTGCTTTTTTTGGATTGTTCAAGTGGACAGGAGTTCTCAACAGGACAC-CGGCCTTGATC 523
                      *** ** *     *** **  *     **  ****   **    **     *  ***** 

consensus_3917#0      AAATATCTCCTGGTTACTTAAAA 545
consensus_3917#1      AAGT-TCTCATGCTCATCA---- 541
                      ** * **** ** * *