These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3920#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [ATGCTGAAGCAGTACGTACAGGATTGGAACCATCTGATTCAATAAGTTTAGACAACATATTCAACTGTGATCTAAGCTGTTGTACTTCATTCATTGAATCAACTATTTGTGGTAACTCATTTGTTGAACGTCCAATTCTTGTTGTATATACATTTTTATCAGGATAATTAGTTGACTGTATTGGTTGTGATGGATTAGTTTGATGATAATAACCTCTAGAGCCGGAATTCAAATTTGGTAAAGCTGATCTAATATTTATTGGTGTTTAGTGTATTAAGACGTTTGAATGTGAAAATCAATAACATTCAACCTGAAGATATAATGAAAGGGGATAAGGATACTGTACTTGAATTATTGATTGCAATTAATGATTATTTTTTACCTAAACACAATATGAAAACCCCTAAGAAATTCAATGCAAATAATCATAACAGCAATTATTATGATGTTGATTACAAAATGGAATCAAATGGTCGTTCATCAGCATGGAGTACTTTAAGTGGTTCAACTAGAAGAACACCAATAAATCGATCAGAAACAGCACCACATTTAAATGGTAATCATGANAATGGAATATTATCAACAAATAATCATCATTTACAA] [+] EMBL CD153423 [ATGCTGAAGCAGTACGTACAGGATTGGAACCATCTGATTCAATAAGTTTAGACAACATATTCAACTGTGATCTAAGCTGTTGTACTTCATTCATTGAATCAACTATTTGTGGTAACTCATTTGTTGAACGTCCAATTCTTGTTGTATATACATTTTTATCAGGATAATTAGTTGACTGTATTGGTTGTGATGGATTAGTTTGATGATAATAACCTCTAGAGCCGGAATTCAAATTTGGTAAAGCTGATCTAATATTTATTGGTGTTTAGTGTATTAAGACGTTTGAATGTGAAAATCAATAACATTCAACCTGAAGATATAATGAAAGGGGATAAGGATACTGTACTTGAATTATTGATTGCAATTAATGATTATTTTTTACCTAAACACAATATGAAAACCCCTAAGAAATTCAATGCAAATAATCATAACAGCAATTATTATGATGTTGATTACAAAATGGAATCAAATGGTCGTTCATCAGCATGGAGTACTTTAAGTGGTTCAACTAGAAGAACACCAATAAATCGATCAGAAACAGCACCACATTTAAATGGTAATCATGANAATGGAATATTATCAACAAATAATCATCATTTACAA] consensusID : consensus_3920#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence [CGCTGCTGTTTGACGTAATGCTGAAGCAGTACGTACAGGATTGGAACCATCTGATTCAATAAGTTTAGACAACATATTCAACTGTGATCTAAGCTGTTGTACTTCATTCATTGAATCAACTATTTGTGGTAACTCATTTGTTGAACGTCCAATTCTTGTTGTATATACATTTTTATCAGGATAATTAGTTGACTGTATTGGTTGTGATGGATTAGTTTGATGATAATAACCTCTAGAGCCGGAATTCAAATTTGGTAAAGCTGATCTAATATTTATTGGTGCTGTTGATATTGAGGCTTCTCTTCTACCATGTATAGATCTAGGTGATAATGGATCTGAACGAACTCTATACACTGTACTTTTTGATCGTGGACTTGTAGAATTAGTTAATTCTGATGGAGTTGGTGTTGGTGCTAATGAATGATGAGAAGATGAATAAAGTTGTCGATTATTAGTATTATCTGTAAAACGATCTATAGAATTTGACCATGGTAAATCAATTGTAGGA] [-] EMBL CD169300 [CGCTGCTGTTTGACGTAATGCTGAAGCAGTACGTACAGGATTGGAACCATCTGATTCAATAAGTTTAGACAACATATTCAACTGTGATCTAAGCTGTTGTACTTCATTCATTGAATCAACTATTTGTGGTAACTCATTTGTTGAACGTCCAATTCTTGTTGTATATACATTTTTATCAGGATAATTAGTTGACTGTATTGGTTGTGATGGATTAGTTTGATGATAATAACCTCTAGAGCCGGAATTCAAATTTGGTAAAGCTGATCTAATATTTATTGGTGCTGTTGATATTGAGGCTTCTCTTCTACCATGTATAGATCTAGGTGATAATGGATCTGAACGAACTCTATACACTGTACTTTTTGATCGTGGACTTGTAGAATTAGTTAATTCTGATGGAGTTGGTGTTGGTGCTAATGAATGATGAGAAGATGAATAAAGTTGTCGATTATTAGTATTATCTGTAAAACGATCTATAGAATTTGACCATGGTAAATCAATTGTAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3920#0 -----------------ATGCTGAAGCAGTACGTACAGGATTGGAACCATCTGATTCAAT 43 consensus_3920#1 CGCTGCTGTTTGACGTAATGCTGAAGCAGTACGTACAGGATTGGAACCATCTGATTCAAT 60 ******************************************* consensus_3920#0 AAGTTTAGACAACATATTCAACTGTGATCTAAGCTGTTGTACTTCATTCATTGAATCAAC 103 consensus_3920#1 AAGTTTAGACAACATATTCAACTGTGATCTAAGCTGTTGTACTTCATTCATTGAATCAAC 120 ************************************************************ consensus_3920#0 TATTTGTGGTAACTCATTTGTTGAACGTCCAATTCTTGTTGTATATACATTTTTATCAGG 163 consensus_3920#1 TATTTGTGGTAACTCATTTGTTGAACGTCCAATTCTTGTTGTATATACATTTTTATCAGG 180 ************************************************************ consensus_3920#0 ATAATTAGTTGACTGTATTGGTTGTGATGGATTAGTTTGATGATAATAACCTCTAGAGCC 223 consensus_3920#1 ATAATTAGTTGACTGTATTGGTTGTGATGGATTAGTTTGATGATAATAACCTCTAGAGCC 240 ************************************************************ consensus_3920#0 GGAATTCAAATTTGGTAAAGCTGATCTAATATTTATTGGTGTTTAGTGTATTAAGACGTT 283 consensus_3920#1 GGAATTCAAATTTGGTAAAGCTGATCTAATATTTATTGGTGCTGTTGATATTGAGGCTTC 300 ***************************************** * **** ** * * consensus_3920#0 TGAATGTGAAAATCAATAACATTCAACCTGAAGATATAATGAAAGGGGATAAGGATACTG 343 consensus_3920#1 T--CTTCTACCATGTATAGA--TCTAGGTGATAATGGATCTGAACGAACTCTATACACTG 356 * * * ** *** ** * *** ** * ** * * * **** consensus_3920#0 TACTTG--AATTATTGATTGCAATTAATGATTATTTTTTACCTAAACACAATATGAAAAC 401 consensus_3920#1 TACTTTTTGATCGTGGACTTGTAGAATTAGTTAATTCTGA--TGGAGTTGGTGTTGGTGC 414 ***** ** * ** * * * * *** ** * * * * * * * consensus_3920#0 CCCTAAGAAATTCAATG-CAAATAATCATAACAGCAATTATTATGATGTTGATTACAAA- 459 consensus_3920#1 TAATGAATGATGAGAAGATGAATAAAGTTGTCGATTATTAGTATTATCTGTAAAACGATC 474 * * ** * * ***** * * **** *** ** * * ** * consensus_3920#0 -ATGGAATCAAATGGTCGTTCATCAGCATGGAGTACTTTAAGTGGTTCAACTAGAAGAAC 518 consensus_3920#1 TATAGAATTTGACCATGGTAAATCAAT-TGTAGGA------------------------- 508 ** **** * * ** **** ** ** * consensus_3920#0 ACCAATAAATCGATCAGAAACAGCACCACATTTAAATGGTAATCATGANAATGGAATATT 578 consensus_3920#1 ------------------------------------------------------------ consensus_3920#0 ATCAACAAATAATCATCATTTACAA 603 consensus_3920#1 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||