cluster # 3931

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Schistosoma mansoni
cluster # 3931 cluster # 3931 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3931#0 length = 177 sequences # 1

consensus_3931#1 length = 166 sequences # 1

consensusID : consensus_3931#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 177
fasta sequence

                              [AAAGGAATTAGTGAATGTACATGTCATATATTTTCTGAATGTGATCCAGTTCATTCAGCTGAATCTATTGTGAATTATATACGAACTATATATCCTCATTTGAAGAGTTAATTCTAAAATTAAAATTAAAATCATCAGTCAAAAAAAATCTATTATTGAAATGTTATTATTATATTA]

[+] EMBL AA958277             [AAAGGAATTAGTGAATGTACATGTCATATATTTTCTGAATGTGATCCAGTTCATTCAGCTGAATCTATTGTGAATTATATACGAACTATATATCCTCATTTGAAGAGTTAATTCTAAAATTAAAATTAAAATCATCAGTCAAAAAAAATCTATTATTGAAATGTTATTATTATATTA]




>consensus_3931#0
AAAGGAATTAGTGAATGTACATGTCATATATTTTCTGAATGTGATCCAGTTCATTCAGCT
GAATCTATTGTGAATTATATACGAACTATATATCCTCATTTGAAGAGTTAATTCTAAAAT
TAAAATTAAAATCATCAGTCAAAAAAAATCTATTATTGAAATGTTATTATTATATTA

consensusID : consensus_3931#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 166
fasta sequence

                              [ATAGGAAATAGTGAATGTACATGTCATATATTTTCTGAATGTGATCCAGTTCATTCAGCTGAATCTATTGTGAATATAACGACTATAATCCACTTGAGAGTAATCCAAATTATATTATATCACAGCAATATAACTATATGTATGTAATATATATTAGCATGACGAG]

[+] EMBL SMAA25570            [ATAGGAAATAGTGAATGTACATGTCATATATTTTCTGAATGTGATCCAGTTCATTCAGCTGAATCTATTGTGAATATAACGACTATAATCCACTTGAGAGTAATCCAAATTATATTATATCACAGCAATATAACTATATGTATGTAATATATATTAGCATGACGAG]




>consensus_3931#1
ATAGGAAATAGTGAATGTACATGTCATATATTTTCTGAATGTGATCCAGTTCATTCAGCT
GAATCTATTGTGAATATAACGACTATAATCCACTTGAGAGTAATCCAAATTATATTATAT
CACAGCAATATAACTATATGTATGTAATATATATTAGCATGACGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3931#0      AAAGGAATTAGTGAATGTACATGTCATATATTTTCTGAATGTGATCCAGTTCATTCAGCT 60
consensus_3931#1      ATAGGAAATAGTGAATGTACATGTCATATATTTTCTGAATGTGATCCAGTTCATTCAGCT 60
                      * ***** ****************************************************

consensus_3931#0      GAATCTATTGTGAATTATATACGAACTATATATCCTCATTTGAAGAGTTAATTCTAAAAT 120
consensus_3931#1      GAATCTATTGTGAA---TATAACGACTATA-ATC--CACTTGAGAG--TAATCC--AAAT 110
                      **************   ****   ****** ***  ** ****     **** *  ****

consensus_3931#0      TAAAATTAAAATCATCAGTCAAAAAAAATCTATTATTGAAATGTTATTATTATATTA 177
consensus_3931#1      TATATTATATCACAGCAATATAACTATATGTATGTAATATATATTAGCATGACGAG- 166
                      ** * *  *   ** ** *  **  * ** ***     * ** ***  ** *