cluster # 3933

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 3933 cluster # 3933 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3933#0 length = 300 sequences # 1

consensus_3933#1 length = 249 sequences # 1

consensusID : consensus_3933#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 300
fasta sequence

                              [GTCCTAAGCTCGTNATGTCTAAGNAACGGTGGAGGGAGCTCCCGAAATGGTTAAAAAGAAGCTGCTATGAGGGAAAAAGCAGAAACAAATTTTGGAAACTGAAAAGATGAGAATTTAGCTCCATGGGCTAAAAGAAGTTCAGAAGAAGAATGCCGGCTTAGCAAGGAAGGGATATCCGATGCCACAAATTCTGAAATTGAAAGTAATTTGAGCTGAAAATACGAATTTGGTGCTTTTTTTCTTTATTACGATAGGTTTGGATATGTTTTTNGNGGAATGAAATGGGTAAACTAGATTATT]

[+] EMBL SM896                [GTCCTAAGCTCGTNATGTCTAAGNAACGGTGGAGGGAGCTCCCGAAATGGTTAAAAAGAAGCTGCTATGAGGGAAAAAGCAGAAACAAATTTTGGAAACTGAAAAGATGAGAATTTAGCTCCATGGGCTAAAAGAAGTTCAGAAGAAGAATGCCGGCTTAGCAAGGAAGGGATATCCGATGCCACAAATTCTGAAATTGAAAGTAATTTGAGCTGAAAATACGAATTTGGTGCTTTTTTTCTTTATTACGATAGGTTTGGATATGTTTTTNGNGGAATGAAATGGGTAAACTAGATTATT]




>consensus_3933#0
GTCCTAAGCTCGTNATGTCTAAGNAACGGTGGAGGGAGCTCCCGAAATGGTTAAAAAGAA
GCTGCTATGAGGGAAAAAGCAGAAACAAATTTTGGAAACTGAAAAGATGAGAATTTAGCT
CCATGGGCTAAAAGAAGTTCAGAAGAAGAATGCCGGCTTAGCAAGGAAGGGATATCCGAT
GCCACAAATTCTGAAATTGAAAGTAATTTGAGCTGAAAATACGAATTTGGTGCTTTTTTT
CTTTATTACGATAGGTTTGGATATGTTTTTNGNGGAATGAAATGGGTAAACTAGATTATT

consensusID : consensus_3933#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 249
fasta sequence

                              [GCCCAAAAAGAACGAGAGAAAGGACGTGGAAAAACGATGGAAGACGTTATGTCTAAGAACGGTGAGGAGCTCCCGAATGGTTAAAAGAAGCTGCTATGAGGAAAAAGCAGAAACAAATTTTGAAACTGAAAGATGAGAATTTAGCTCCATGGCTAAAAGAGTTCAGAAGAAGAATGCCGGCTTAGCAAGAAGGATATCCGGTGCCACAAATTCTGAAATTGAAAGTAATTTGAGCTGAAATACGAATTG]

[+] EMBL AA958298             [GCCCAAAAAGAACGAGAGAAAGGACGTGGAAAAACGATGGAAGACGTTATGTCTAAGAACGGTGAGGAGCTCCCGAATGGTTAAAAGAAGCTGCTATGAGGAAAAAGCAGAAACAAATTTTGAAACTGAAAGATGAGAATTTAGCTCCATGGCTAAAAGAGTTCAGAAGAAGAATGCCGGCTTAGCAAGAAGGATATCCGGTGCCACAAATTCTGAAATTGAAAGTAATTTGAGCTGAAATACGAATTG]




>consensus_3933#1
GCCCAAAAAGAACGAGAGAAAGGACGTGGAAAAACGATGGAAGACGTTATGTCTAAGAAC
GGTGAGGAGCTCCCGAATGGTTAAAAGAAGCTGCTATGAGGAAAAAGCAGAAACAAATTT
TGAAACTGAAAGATGAGAATTTAGCTCCATGGCTAAAAGAGTTCAGAAGAAGAATGCCGG
CTTAGCAAGAAGGATATCCGGTGCCACAAATTCTGAAATTGAAAGTAATTTGAGCTGAAA
TACGAATTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3933#0      -----------------------------------GTCCTAAGCTCGTNATGTCTAAGNA 25
consensus_3933#1      GCCCAAAAAGAACGAGAGAAAGGACGTGGAAAAACGATGGAAGA-CGTTATGTCTAAGAA 59
                                                         *    ***  *** ********* *

consensus_3933#0      ACGGTGGAGGGAGCTCCCGAAATGGTTAAAAAGAAGCTGCTATGAGGGAAAAAGCAGAAA 85
consensus_3933#1      -CGGTGA--GGAGCTCCCGAA-TGGTTAAAA-GAAGCTGCTATGAGG-AAAAAGCAGAAA 113
                       *****   ************ ********* *************** ************

consensus_3933#0      CAAATTTTGGAAACTGAAAAGATGAGAATTTAGCTCCATGGGCTAAAAGAAGTTCAGAAG 145
consensus_3933#1      CAAATTTTG-AAACTGAAA-GATGAGAATTTAGCTCCATGG-CTAAAAGA-GTTCAGAAG 169
                      ********* ********* ********************* ******** *********

consensus_3933#0      AAGAATGCCGGCTTAGCAAGGAAGGGATATCCGATGCCACAAATTCTGAAATTGAAAGTA 205
consensus_3933#1      AAGAATGCCGGCTTAGCAAG--AAGGATATCCGGTGCCACAAATTCTGAAATTGAAAGTA 227
                      ********************  * ********* **************************

consensus_3933#0      ATTTGAGCTGAAAATACGAATTTGGTGCTTTTTTTCTTTATTACGATAGGTTTGGATATG 265
consensus_3933#1      ATTTGAGCTGAAA-TACGAATTG------------------------------------- 249
                      ************* ********                                      

consensus_3933#0      TTTTTNGNGGAATGAAATGGGTAAACTAGATTATT 300
consensus_3933#1      -----------------------------------