cluster # 394

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Schistosoma mansoni
cluster # 394 cluster # 394 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_394#0 length = 626 sequences # 1

consensus_394#1 length = 513 sequences # 1

consensusID : consensus_394#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 626
fasta sequence

                              [ACATCCAGTGCTTCCATAGAGGTCTAGCTTCAATTAACTCACGAATTCAGACACTTAAGTGACTATAATAGCCACAAAACTATTCTTCGGATAAGAATATCAATTGTTGACAAATACACACACACACACATAGAGACAGATAGAATATACTCTGACGACAGTTAGCGAGGATTTAGTAAATAATTATGAATGAAGGGGATGCATGCGAAAAAGGTTTCAAATGAGCTAGTTCGACTTATCTTGGTTTTAACAACAAAACGTTGCTCTAAGGAATAAAGAAGCCCTTCGGAACGTTTTTTTTCCATTTCACATAACCATGCTACTATCTGACCGATTGACATGATTTTGCTATTGATTCACGCTAGATTGATGACATGGAAATTCCTATAATGGGAGTTGAAATGCCCTTGTAACCAGAGAGTGAGTAAATATACCAAGATAAAAGAAGACTAACAATAGCTAAGATAAGCAAAGATGGATAGTGGCTAGCAATGGAGTCCAGTTTGACGTGCGTTTCGTCCTATTTGGGACTCGTCAGCTGGATATACCTGCATCTCAGAGTTGATGTTCACTCTGGGACTCGAACCCAGTTTCTTTCGCTTCAAACGCCATCGCGTTATCCACTC]

[+] EMBL CD168021             [ACATCCAGTGCTTCCATAGAGGTCTAGCTTCAATTAACTCACGAATTCAGACACTTAAGTGACTATAATAGCCACAAAACTATTCTTCGGATAAGAATATCAATTGTTGACAAATACACACACACACACATAGAGACAGATAGAATATACTCTGACGACAGTTAGCGAGGATTTAGTAAATAATTATGAATGAAGGGGATGCATGCGAAAAAGGTTTCAAATGAGCTAGTTCGACTTATCTTGGTTTTAACAACAAAACGTTGCTCTAAGGAATAAAGAAGCCCTTCGGAACGTTTTTTTTCCATTTCACATAACCATGCTACTATCTGACCGATTGACATGATTTTGCTATTGATTCACGCTAGATTGATGACATGGAAATTCCTATAATGGGAGTTGAAATGCCCTTGTAACCAGAGAGTGAGTAAATATACCAAGATAAAAGAAGACTAACAATAGCTAAGATAAGCAAAGATGGATAGTGGCTAGCAATGGAGTCCAGTTTGACGTGCGTTTCGTCCTATTTGGGACTCGTCAGCTGGATATACCTGCATCTCAGAGTTGATGTTCACTCTGGGACTCGAACCCAGTTTCTTTCGCTTCAAACGCCATCGCGTTATCCACTC]




>consensus_394#0
ACATCCAGTGCTTCCATAGAGGTCTAGCTTCAATTAACTCACGAATTCAGACACTTAAGT
GACTATAATAGCCACAAAACTATTCTTCGGATAAGAATATCAATTGTTGACAAATACACA
CACACACACATAGAGACAGATAGAATATACTCTGACGACAGTTAGCGAGGATTTAGTAAA
TAATTATGAATGAAGGGGATGCATGCGAAAAAGGTTTCAAATGAGCTAGTTCGACTTATC
TTGGTTTTAACAACAAAACGTTGCTCTAAGGAATAAAGAAGCCCTTCGGAACGTTTTTTT
TCCATTTCACATAACCATGCTACTATCTGACCGATTGACATGATTTTGCTATTGATTCAC
GCTAGATTGATGACATGGAAATTCCTATAATGGGAGTTGAAATGCCCTTGTAACCAGAGA
GTGAGTAAATATACCAAGATAAAAGAAGACTAACAATAGCTAAGATAAGCAAAGATGGAT
AGTGGCTAGCAATGGAGTCCAGTTTGACGTGCGTTTCGTCCTATTTGGGACTCGTCAGCT
GGATATACCTGCATCTCAGAGTTGATGTTCACTCTGGGACTCGAACCCAGTTTCTTTCGC
TTCAAACGCCATCGCGTTATCCACTC

consensusID : consensus_394#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 513
fasta sequence

                              [CGCGTCACTTCGTCCTATTTGGGACTCATCAGCTGGATGTAATTGCATCTCAGGGTTGATGTTCACTCTGGGAATCGAACCCAGTACCTTTCGCTTCAAACGCCATCGCCAATTAGAGACTGACCAGTTGCGGTCCTATAAACATCAATGGGAAGATCCAAACAAACAATACTAAGTAAATGGGATAGTTTAGAAATGAGTATACTTCATTTGCTATGATTCAGACAGAACGTATAGAATGAGTAATGAATCTAATTTGCTATGGTCAAAAACACTAAGGTGATGTATCCATCAGAAGTTCACTTAGAGAGAGAAAGAGAGAGGGGGAACCAGAAAGGAATTTTTATATCAATCTGTAGATAATATACATCACAGAATTATCCTATTTGGAGTATCATTGAGAAATATGAGTTACTAAAGAGCTATTTGATCCTAACATATGACCCTTCAACAGTTTATACTCACAACTAAAACAGGGATCGAACCCAAGAATTTAAGATCCATCAAGGAACT]

[+] EMBL CD088258             [CGCGTCACTTCGTCCTATTTGGGACTCATCAGCTGGATGTAATTGCATCTCAGGGTTGATGTTCACTCTGGGAATCGAACCCAGTACCTTTCGCTTCAAACGCCATCGCCAATTAGAGACTGACCAGTTGCGGTCCTATAAACATCAATGGGAAGATCCAAACAAACAATACTAAGTAAATGGGATAGTTTAGAAATGAGTATACTTCATTTGCTATGATTCAGACAGAACGTATAGAATGAGTAATGAATCTAATTTGCTATGGTCAAAAACACTAAGGTGATGTATCCATCAGAAGTTCACTTAGAGAGAGAAAGAGAGAGGGGGAACCAGAAAGGAATTTTTATATCAATCTGTAGATAATATACATCACAGAATTATCCTATTTGGAGTATCATTGAGAAATATGAGTTACTAAAGAGCTATTTGATCCTAACATATGACCCTTCAACAGTTTATACTCACAACTAAAACAGGGATCGAACCCAAGAATTTAAGATCCATCAAGGAACT]




>consensus_394#1
CGCGTCACTTCGTCCTATTTGGGACTCATCAGCTGGATGTAATTGCATCTCAGGGTTGAT
GTTCACTCTGGGAATCGAACCCAGTACCTTTCGCTTCAAACGCCATCGCCAATTAGAGAC
TGACCAGTTGCGGTCCTATAAACATCAATGGGAAGATCCAAACAAACAATACTAAGTAAA
TGGGATAGTTTAGAAATGAGTATACTTCATTTGCTATGATTCAGACAGAACGTATAGAAT
GAGTAATGAATCTAATTTGCTATGGTCAAAAACACTAAGGTGATGTATCCATCAGAAGTT
CACTTAGAGAGAGAAAGAGAGAGGGGGAACCAGAAAGGAATTTTTATATCAATCTGTAGA
TAATATACATCACAGAATTATCCTATTTGGAGTATCATTGAGAAATATGAGTTACTAAAG
AGCTATTTGATCCTAACATATGACCCTTCAACAGTTTATACTCACAACTAAAACAGGGAT
CGAACCCAAGAATTTAAGATCCATCAAGGAACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_394#0      ACATCCAGTGCTTCCATAGAGGTCTAGCTTCAATTAACTCACGAAT--TCAGAC--ACTT 56
consensus_394#1      --------------------CGCGTCACTTCGTCCTATTTGGGACTCATCAGCTGGATGT 40
                                          *  *  ****     * *   ** *  ****    *  *

consensus_394#0      AAGTGACTATAATAGCCACAAAACTATTCTTCGGATAAGAAT-ATCAATTGTTGACAAAT 115
consensus_394#1      AATTGCATCTCAGGGTTG-ATGTTCACTCTGGGAATCGAACCCAGTACCTTTCGCTTCAA 99
                     ** **  * * *  *    *     * ***  * **   *   *  *  * * *    * 

consensus_394#0      ACACACACACACACATAGAGACAGATAGAATATACTCTGACGACAGTTAGCGAGGATTT- 174
consensus_394#1      ACGC-CATCGCCAATTAGAGACTGACCAGTTGCGGTCCTATAAACATCAATGGGAAGATC 158
                     ** * **    **  ******* **     *    **  *  *   * *  * * *  * 

consensus_394#0      --AGTAAATAATTATGAATGAAGGGGATGCATGCGAAAAAGGTTTCAAATGAGCTAGTTC 232
consensus_394#1      CAAACAAACAATACTAAGTAAATGGGAT-----------AGTTTAGAAATGAGTATACTT 207
                       *  *** ***  * * * ** *****           ** **  *******     * 

consensus_394#0      GACTTATCTTGGTTTTAACAACAAAACGTTGCTCTAAGGAATAAAGAAGCCCTTCGGAAC 292
consensus_394#1      CATTTGCTATGATTCAGACAG---AACGT--ATAGAATGAGTAATGAA------------ 250
                      * **    ** **   ***    *****   *  ** ** *** ***            

consensus_394#0      GTTTTTTTTCCATTTCACATAACCATGCTACTATCTGACCGATTGACATGATTTTGCTAT 352
consensus_394#1      --------TCTAATT----------TGCTATGGTCAAAAACACTAAGGTGATGTATCCAT 292
                             ** * **          *****   **  *   * * *  **** *  * **

consensus_394#0      TGATTCACGCTAGATTGATGACATGGAAATTCCTATAATGGGAGTT-GAAATGCCCTTGT 411
consensus_394#1      CAG---AAGTTCACTTAGAGAGAGAAAGAG----AGAGGGGGAACCAGAAAGGAATTTTT 345
                           * * *   **   ** *   * *     * *  ****    **** *   ** *

consensus_394#0      A-ACCAGAGAGTGAGTAAATATACCAAGATAAAAGAAGACTAACAATAGCTAAGATAAGC 470
consensus_394#1      ATATCAATCTGTAGATAA-TATAC-ATCACAGAATTATCCTATTTGGAG-TATCATTGAG 402
                     * * **    **   *** ***** *  * * **  *  ***     ** **  **    

consensus_394#0      AAAGATGGATAGTGGCTAGCAATGGAGTCCAGTTTGACGTGCGTTTCGTCC-TATTTGGG 529
consensus_394#1      AAATATG---AGTTACTAAAGAGCTATTTGATCCTAACATATGACCCTTCAACAGTTTAT 459
                     *** ***   ***  ***   *   * *  *   * ** *  *   * **   * **   

consensus_394#0      ACTCGTCAGCTGGATATACCT-GCATCTCAGAGTTGATGTTCACTCTGGGACTCGAACCC 588
consensus_394#1      ACTCACAACTAAAACAGGGATCGAACCCAAGAATTTAAGATCCATCAAGGAACT------ 513
                     ****   *     * *    * * * *  *** ** * * **  **  ***         

consensus_394#0      AGTTTCTTTCGCTTCAAACGCCATCGCGTTATCCACTC 626
consensus_394#1      --------------------------------------