These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_394#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence [ACATCCAGTGCTTCCATAGAGGTCTAGCTTCAATTAACTCACGAATTCAGACACTTAAGTGACTATAATAGCCACAAAACTATTCTTCGGATAAGAATATCAATTGTTGACAAATACACACACACACACATAGAGACAGATAGAATATACTCTGACGACAGTTAGCGAGGATTTAGTAAATAATTATGAATGAAGGGGATGCATGCGAAAAAGGTTTCAAATGAGCTAGTTCGACTTATCTTGGTTTTAACAACAAAACGTTGCTCTAAGGAATAAAGAAGCCCTTCGGAACGTTTTTTTTCCATTTCACATAACCATGCTACTATCTGACCGATTGACATGATTTTGCTATTGATTCACGCTAGATTGATGACATGGAAATTCCTATAATGGGAGTTGAAATGCCCTTGTAACCAGAGAGTGAGTAAATATACCAAGATAAAAGAAGACTAACAATAGCTAAGATAAGCAAAGATGGATAGTGGCTAGCAATGGAGTCCAGTTTGACGTGCGTTTCGTCCTATTTGGGACTCGTCAGCTGGATATACCTGCATCTCAGAGTTGATGTTCACTCTGGGACTCGAACCCAGTTTCTTTCGCTTCAAACGCCATCGCGTTATCCACTC] [+] EMBL CD168021 [ACATCCAGTGCTTCCATAGAGGTCTAGCTTCAATTAACTCACGAATTCAGACACTTAAGTGACTATAATAGCCACAAAACTATTCTTCGGATAAGAATATCAATTGTTGACAAATACACACACACACACATAGAGACAGATAGAATATACTCTGACGACAGTTAGCGAGGATTTAGTAAATAATTATGAATGAAGGGGATGCATGCGAAAAAGGTTTCAAATGAGCTAGTTCGACTTATCTTGGTTTTAACAACAAAACGTTGCTCTAAGGAATAAAGAAGCCCTTCGGAACGTTTTTTTTCCATTTCACATAACCATGCTACTATCTGACCGATTGACATGATTTTGCTATTGATTCACGCTAGATTGATGACATGGAAATTCCTATAATGGGAGTTGAAATGCCCTTGTAACCAGAGAGTGAGTAAATATACCAAGATAAAAGAAGACTAACAATAGCTAAGATAAGCAAAGATGGATAGTGGCTAGCAATGGAGTCCAGTTTGACGTGCGTTTCGTCCTATTTGGGACTCGTCAGCTGGATATACCTGCATCTCAGAGTTGATGTTCACTCTGGGACTCGAACCCAGTTTCTTTCGCTTCAAACGCCATCGCGTTATCCACTC] consensusID : consensus_394#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence [CGCGTCACTTCGTCCTATTTGGGACTCATCAGCTGGATGTAATTGCATCTCAGGGTTGATGTTCACTCTGGGAATCGAACCCAGTACCTTTCGCTTCAAACGCCATCGCCAATTAGAGACTGACCAGTTGCGGTCCTATAAACATCAATGGGAAGATCCAAACAAACAATACTAAGTAAATGGGATAGTTTAGAAATGAGTATACTTCATTTGCTATGATTCAGACAGAACGTATAGAATGAGTAATGAATCTAATTTGCTATGGTCAAAAACACTAAGGTGATGTATCCATCAGAAGTTCACTTAGAGAGAGAAAGAGAGAGGGGGAACCAGAAAGGAATTTTTATATCAATCTGTAGATAATATACATCACAGAATTATCCTATTTGGAGTATCATTGAGAAATATGAGTTACTAAAGAGCTATTTGATCCTAACATATGACCCTTCAACAGTTTATACTCACAACTAAAACAGGGATCGAACCCAAGAATTTAAGATCCATCAAGGAACT] [+] EMBL CD088258 [CGCGTCACTTCGTCCTATTTGGGACTCATCAGCTGGATGTAATTGCATCTCAGGGTTGATGTTCACTCTGGGAATCGAACCCAGTACCTTTCGCTTCAAACGCCATCGCCAATTAGAGACTGACCAGTTGCGGTCCTATAAACATCAATGGGAAGATCCAAACAAACAATACTAAGTAAATGGGATAGTTTAGAAATGAGTATACTTCATTTGCTATGATTCAGACAGAACGTATAGAATGAGTAATGAATCTAATTTGCTATGGTCAAAAACACTAAGGTGATGTATCCATCAGAAGTTCACTTAGAGAGAGAAAGAGAGAGGGGGAACCAGAAAGGAATTTTTATATCAATCTGTAGATAATATACATCACAGAATTATCCTATTTGGAGTATCATTGAGAAATATGAGTTACTAAAGAGCTATTTGATCCTAACATATGACCCTTCAACAGTTTATACTCACAACTAAAACAGGGATCGAACCCAAGAATTTAAGATCCATCAAGGAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_394#0 ACATCCAGTGCTTCCATAGAGGTCTAGCTTCAATTAACTCACGAAT--TCAGAC--ACTT 56 consensus_394#1 --------------------CGCGTCACTTCGTCCTATTTGGGACTCATCAGCTGGATGT 40 * * **** * * ** * **** * * consensus_394#0 AAGTGACTATAATAGCCACAAAACTATTCTTCGGATAAGAAT-ATCAATTGTTGACAAAT 115 consensus_394#1 AATTGCATCTCAGGGTTG-ATGTTCACTCTGGGAATCGAACCCAGTACCTTTCGCTTCAA 99 ** ** * * * * * * *** * ** * * * * * * * consensus_394#0 ACACACACACACACATAGAGACAGATAGAATATACTCTGACGACAGTTAGCGAGGATTT- 174 consensus_394#1 ACGC-CATCGCCAATTAGAGACTGACCAGTTGCGGTCCTATAAACATCAATGGGAAGATC 158 ** * ** ** ******* ** * ** * * * * * * * * consensus_394#0 --AGTAAATAATTATGAATGAAGGGGATGCATGCGAAAAAGGTTTCAAATGAGCTAGTTC 232 consensus_394#1 CAAACAAACAATACTAAGTAAATGGGAT-----------AGTTTAGAAATGAGTATACTT 207 * *** *** * * * ** ***** ** ** ******* * consensus_394#0 GACTTATCTTGGTTTTAACAACAAAACGTTGCTCTAAGGAATAAAGAAGCCCTTCGGAAC 292 consensus_394#1 CATTTGCTATGATTCAGACAG---AACGT--ATAGAATGAGTAATGAA------------ 250 * ** ** ** *** ***** * ** ** *** *** consensus_394#0 GTTTTTTTTCCATTTCACATAACCATGCTACTATCTGACCGATTGACATGATTTTGCTAT 352 consensus_394#1 --------TCTAATT----------TGCTATGGTCAAAAACACTAAGGTGATGTATCCAT 292 ** * ** ***** ** * * * * **** * * ** consensus_394#0 TGATTCACGCTAGATTGATGACATGGAAATTCCTATAATGGGAGTT-GAAATGCCCTTGT 411 consensus_394#1 CAG---AAGTTCACTTAGAGAGAGAAAGAG----AGAGGGGGAACCAGAAAGGAATTTTT 345 * * * ** ** * * * * * **** **** * ** * consensus_394#0 A-ACCAGAGAGTGAGTAAATATACCAAGATAAAAGAAGACTAACAATAGCTAAGATAAGC 470 consensus_394#1 ATATCAATCTGTAGATAA-TATAC-ATCACAGAATTATCCTATTTGGAG-TATCATTGAG 402 * * ** ** *** ***** * * * ** * *** ** ** ** consensus_394#0 AAAGATGGATAGTGGCTAGCAATGGAGTCCAGTTTGACGTGCGTTTCGTCC-TATTTGGG 529 consensus_394#1 AAATATG---AGTTACTAAAGAGCTATTTGATCCTAACATATGACCCTTCAACAGTTTAT 459 *** *** *** *** * * * * * ** * * * ** * ** consensus_394#0 ACTCGTCAGCTGGATATACCT-GCATCTCAGAGTTGATGTTCACTCTGGGACTCGAACCC 588 consensus_394#1 ACTCACAACTAAAACAGGGATCGAACCCAAGAATTTAAGATCCATCAAGGAACT------ 513 **** * * * * * * * *** ** * * ** ** *** consensus_394#0 AGTTTCTTTCGCTTCAAACGCCATCGCGTTATCCACTC 626 consensus_394#1 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||