These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3951#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [TTTCGGCGAAAAACTGGAACATTGCAGATAATAAATTTAAATTCTAAAAAAGACAGAATTGAAAAAGAAAATTTGAAAAGAATAACACAAGAGAATAATCGTCTTTTGAAGAGGATGCATGAAATTCAGAAACATAGTATCATAGGCAATGAAAATGATCAGTATTTAGAAAAAAGCTTAAATGAAGAACAAAGATTGAAAGAAGTCAAACGAGTAACTCAAGAAAATAAAGAATTTATTAAAGGGTCGAAGAATCCAAAAAATTCATATAATAGAGCAAAGTGGGAAAATGATTGGATGAATACACTTACATATATGACTAATATATCAAAATTTACTTTGTATCATCAAAAATCTGTTTCAAAAAAGAAGAATCATCTACTGGAAGATGAAAAATGGGCGGGAGAAAAAATAAAAAAAGGAATCAGTCAACTAGCAGTTGGGTTGTATTCATTGGTTACTTTAACTGTTATGATTACATAAACATTTAGTTTAACAACGTCACTTATTGCAGAGTATTATCAATCATGCTTCGATTGACCTGTAACTAGATAGAAAACAATACTTTGTAGTATTATGTTGAAA] [+] EMBL AW146531 [TTTCGGCGAAAAACTGGAACATTGCAGATAATAAATTTAAATTCTAAAAAAGACAGAATTGAAAAAGAAAATTTGAAAAGAATAACACAAGAGAATAATCGTCTTTTGAAGAGGATGCATGAAATTCAGAAACATAGTATCATAGGCAATGAAAATGATCAGTATTTAGAAAAAAGCTTAAATGAAGAACAAAGATTGAAAGAAGTCAAACGAGTAACTCAAGAAAATAAAGAATTTATTAAAGGGTCGAAGAATCCAAAAAATTCATATAATAGAGCAAAGTGGGAAAATGATTGGATGAATACACTTACATATATGACTAATATATCAAAATTTACTTTGTATCATCAAAAATCTGTTTCAAAAAAGAAGAATCATCTACTGGAAGATGAAAAATGGGCGGGAGAAAAAATAAAAAAAGGAATCAGTCAACTAGCAGTTGGGTTGTATTCATTGGTTACTTTAACTGTTATGATTACATAAACATTTAGTTTAACAACGTCACTTATTGCAGAGTATTATCAATCATGCTTCGATTGACCTGTAACTAGATAGAAAACAATACTTTGTAGTATTATGTTGAAA] consensusID : consensus_3951#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence [AGTGAAACCTTGTCAAAATAAACCCCTCCAATATAAATTTGATAAAAGATACCAGGATGCCCATTTAAAGGCGTTAGCTAAAATGAAATCCACAGTGGATACAACTGCACCAAGAACATTTCAGATAATAAATTTAAATTCTAAAAAAGACAGAATTGAAAAAGAAAATTTGAAAAGAATAACACAAGAGAATAATCGTCTTTTGAAGAGGATGCATGAAATTCAGAAACATAGTATCATAGGCAATGAAAATGATCAGTATTTAGAAAAAAGCTTAAATGAAGAACAAAGATTGAAAGAAGTCAAACGAGTAACTCAAGAAAATAAAGAAATTATTAGAAGGTTGAAGAATCCAAAAAATTCATATAATAGAGCAAAGTGGGAAAATGATTGGATGAATACACTTACATATATGACTAATATATCAAAATTTACTTTGTATCATCAAAAATCAGTTTCAAAAAAGAAGAATCAACTAACTGAAGATGAAAAATGGCGGGAGAAAAAATAAAAAAGGAATCAGTCAACTAGCAGNTGGTTGTATTGCATTGNTACTTTAACTGTTATGATTACATANACAT] [+] EMBL CD153852 [AGTGAAACCTTGTCAAAATAAACCCCTCCAATATAAATTTGATAAAAGATACCAGGATGCCCATTTAAAGGCGTTAGCTAAAATGAAATCCACAGTGGATACAACTGCACCAAGAACATTTCAGATAATAAATTTAAATTCTAAAAAAGACAGAATTGAAAAAGAAAATTTGAAAAGAATAACACAAGAGAATAATCGTCTTTTGAAGAGGATGCATGAAATTCAGAAACATAGTATCATAGGCAATGAAAATGATCAGTATTTAGAAAAAAGCTTAAATGAAGAACAAAGATTGAAAGAAGTCAAACGAGTAACTCAAGAAAATAAAGAAATTATTAGAAGGTTGAAGAATCCAAAAAATTCATATAATAGAGCAAAGTGGGAAAATGATTGGATGAATACACTTACATATATGACTAATATATCAAAATTTACTTTGTATCATCAAAAATCAGTTTCAAAAAAGAAGAATCAACTAACTGAAGATGAAAAATGGCGGGAGAAAAAATAAAAAAGGAATCAGTCAACTAGCAGNTGGTTGTATTGCATTGNTACTTTAACTGTTATGATTACATANACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3951#0 ------------------------------------------------------------ consensus_3951#1 AGTGAAACCTTGTCAAAATAAACCCCTCCAATATAAATTTGATAAAAGATACCAGGATGC 60 consensus_3951#0 -----------------------------TTTCGGCGAAAA--ACTG------GAACATT 23 consensus_3951#1 CCATTTAAAGGCGTTAGCTAAAATGAAATCCACAGTGGATACAACTGCACCAAGAACATT 120 * * * * * **** ******* consensus_3951#0 GCAGATAATAAATTTAAATTCTAAAAAAGACAGAATTGAAAAAGAAAATTTGAAAAGAAT 83 consensus_3951#1 TCAGATAATAAATTTAAATTCTAAAAAAGACAGAATTGAAAAAGAAAATTTGAAAAGAAT 180 *********************************************************** consensus_3951#0 AACACAAGAGAATAATCGTCTTTTGAAGAGGATGCATGAAATTCAGAAACATAGTATCAT 143 consensus_3951#1 AACACAAGAGAATAATCGTCTTTTGAAGAGGATGCATGAAATTCAGAAACATAGTATCAT 240 ************************************************************ consensus_3951#0 AGGCAATGAAAATGATCAGTATTTAGAAAAAAGCTTAAATGAAGAACAAAGATTGAAAGA 203 consensus_3951#1 AGGCAATGAAAATGATCAGTATTTAGAAAAAAGCTTAAATGAAGAACAAAGATTGAAAGA 300 ************************************************************ consensus_3951#0 AGTCAAACGAGTAACTCAAGAAAATAAAGAATTTATTAAAGGGTCGAAGAATCCAAAAAA 263 consensus_3951#1 AGTCAAACGAGTAACTCAAGAAAATAAAGAAATTATTAGAAGGTTGAAGAATCCAAAAAA 360 ******************************* ****** * *** *************** consensus_3951#0 TTCATATAATAGAGCAAAGTGGGAAAATGATTGGATGAATACACTTACATATATGACTAA 323 consensus_3951#1 TTCATATAATAGAGCAAAGTGGGAAAATGATTGGATGAATACACTTACATATATGACTAA 420 ************************************************************ consensus_3951#0 TATATCAAAATTTACTTTGTATCATCAAAAATCTGTTTCAAAAAAGAAGAATCATCTACT 383 consensus_3951#1 TATATCAAAATTTACTTTGTATCATCAAAAATCAGTTTCAAAAAAGAAGAATCAACTAAC 480 ********************************* ******************** *** consensus_3951#0 GGAAGATGAAAAATGGGCGGGAGAAAAAATAAAAAAAGGAATCAGTCAACTAGCAGTTGG 443 consensus_3951#1 TGAAGATGAAAAATGG-CGGGAGAAAAAATAAAAAA-GGAATCAGTCAACTAGCAGNTGG 538 *************** ******************* ******************* *** consensus_3951#0 GTTGTATTCATTGGTTACTTTAACTGTTATGATTACATAAACATTTAGTTTAACAACGTC 503 consensus_3951#1 -TTGTATTGCATTGNTACTTTAACTGTTATGATTACATANACAT---------------- 581 ******* * * ************************ **** consensus_3951#0 ACTTATTGCAGAGTATTATCAATCATGCTTCGATTGACCTGTAACTAGATAGAAAACAAT 563 consensus_3951#1 ------------------------------------------------------------ consensus_3951#0 ACTTTGTAGTATTATGTTGAAA 585 consensus_3951#1 ---------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||