These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3964#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence [TATATATATATATGTGTATATGATTACTACATCAAAATGAATATGAAAAAATGAAGATGAACATCAAACAGGTGTATGATGAGCGAAAATTGACAAATATGCATTTCAGACACAAATACATAGACATGGAAACTAATCTAATGGAACAAATCAAAAATATATCAAACTTTATGGACAGCACATGTAACGAAAGAATATCACAATGTGTGCACTATATATATATATATATATATGCAGAGACATACTTATCAACCAGATTCAGAACATAATCTTCTACAGGAATTCAAAATTATTGTCTGGTGAAAATATAACACAAATAATGTTGCGCAATTTGTTTATTACATCTAACAAAGTAAGCAAATGATCAGTCTATACTAGAACAATATGAGGAATGAAAAT] [+] EMBL AI975270 [TATATATATATATGTGTATATGATTACTACATCAAAATGAATATGAAAAAATGAAGATGAACATCAAACAGGTGTATGATGAGCGAAAATTGACAAATATGCATTTCAGACACAAATACATAGACATGGAAACTAATCTAATGGAACAAATCAAAAATATATCAAACTTTATGGACAGCACATGTAACGAAAGAATATCACAATGTGTGCACTATATATATATATATATATATGCAGAGACATACTTATCAACCAGATTCAGAACATAATCTTCTACAGGAATTCAAAATTATTGTCTGGTGAAAATATAACACAAATAATGTTGCGCAATTTGTTTATTACATCTAACAAAGTAAGCAAATGATCAGTCTATACTAGAACAATATGAGGAATGAAAAT] consensusID : consensus_3964#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [AAATTGACAAATATGCATTTCAGACACAAATACATAGACATGGAAACTAATCTAATGGAACAAATCAAAAATATATCAAACTTTATGGTCAGTACATGTAACGAAAGAATATCACAATGTGTGCAATATATATATATATATATATATATATATATGCAGAGACATAATTATTAACCAGATTCAGAAAATAATCTTAAACAGGAATTCAAAATTATTGTCTAGAGAAAATATAACAGAAATAATGTTTGTAAATTTTTTATTACATCTAACAAAGTAAGCAAATGATCAGTCTCCTACTAGAACAATATGAGGAATGAAAATTAACGATGAAAAAGTTCATCAGCAACGTTTATACATAGATGCACAGTAATACATGTATATTATGGATAG] [+] EMBL AA999493 [AAATTGACAAATATGCATTTCAGACACAAATACATAGACATGGAAACTAATCTAATGGAACAAATCAAAAATATATCAAACTTTATGGTCAGTACATGTAACGAAAGAATATCACAATGTGTGCAATATATATATATATATATATATATATATATGCAGAGACATAATTATTAACCAGATTCAGAAAATAATCTTAAACAGGAATTCAAAATTATTGTCTAGAGAAAATATAACAGAAATAATGTTTGTAAATTTTTTATTACATCTAACAAAGTAAGCAAATGATCAGTCTCCTACTAGAACAATATGAGGAATGAAAATTAACGATGAAAAAGTTCATCAGCAACGTTTATACATAGATGCACAGTAATACATGTATATTATGGATAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3964#0 TATATATATATATGTGTATATGATTACTACATCAAAATGAATATGAAAAAATGAAGATGA 60 consensus_3964#1 ------------------------------------------------------------ consensus_3964#0 ACATCAAACAGGTGTATGATGAGCGAAAATTGACAAATATGCATTTCAGACACAAATACA 120 consensus_3964#1 --------------------------AAATTGACAAATATGCATTTCAGACACAAATACA 34 ********************************** consensus_3964#0 TAGACATGGAAACTAATCTAATGGAACAAATCAAAAATATATCAAACTTTATGGACAGCA 180 consensus_3964#1 TAGACATGGAAACTAATCTAATGGAACAAATCAAAAATATATCAAACTTTATGGTCAGTA 94 ****************************************************** *** * consensus_3964#0 CATGTAACGAAAGAATATCACAATGTGTGCACTATATATATATATATATATAT------- 233 consensus_3964#1 CATGTAACGAAAGAATATCACAATGTGTGCAATATATATATATATATATATATATATATA 154 ******************************* ********************* consensus_3964#0 -GCAGAGACATACTTATCAACCAGATTCAGAACATAATCTTCTACAGGAATTCAAAATTA 292 consensus_3964#1 TGCAGAGACATAATTATTAACCAGATTCAGAAAATAATCTTAAACAGGAATTCAAAATTA 214 *********** **** ************** ******** ***************** consensus_3964#0 TTGTCTGGTGAAAATATAACACAAATAATGTTGCGCAATTTGTTTATTACATCTAACAAA 352 consensus_3964#1 TTGTCTAGAGAAAATATAACAGAAATAATGTT-TGTAAATTTTTTATTACATCTAACAAA 273 ****** * ************ ********** * ** ** ****************** consensus_3964#0 GTAAGCAAATGATCAGTCTA-TACTAGAACAATATGAGGAATGAAAAT------------ 399 consensus_3964#1 GTAAGCAAATGATCAGTCTCCTACTAGAACAATATGAGGAATGAAAATTAACGATGAAAA 333 ******************* *************************** consensus_3964#0 --------------------------------------------------------- consensus_3964#1 AGTTCATCAGCAACGTTTATACATAGATGCACAGTAATACATGTATATTATGGATAG 390 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||