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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 3964 cluster # 3964       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3964#0 length = 399 sequences # 1  
consensus_3964#1 length = 390 sequences # 1  

consensusID : consensus_3964#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 399
fasta sequence
                              [TATATATATATATGTGTATATGATTACTACATCAAAATGAATATGAAAAAATGAAGATGAACATCAAACAGGTGTATGATGAGCGAAAATTGACAAATATGCATTTCAGACACAAATACATAGACATGGAAACTAATCTAATGGAACAAATCAAAAATATATCAAACTTTATGGACAGCACATGTAACGAAAGAATATCACAATGTGTGCACTATATATATATATATATATATGCAGAGACATACTTATCAACCAGATTCAGAACATAATCTTCTACAGGAATTCAAAATTATTGTCTGGTGAAAATATAACACAAATAATGTTGCGCAATTTGTTTATTACATCTAACAAAGTAAGCAAATGATCAGTCTATACTAGAACAATATGAGGAATGAAAAT]

[+] EMBL AI975270             [TATATATATATATGTGTATATGATTACTACATCAAAATGAATATGAAAAAATGAAGATGAACATCAAACAGGTGTATGATGAGCGAAAATTGACAAATATGCATTTCAGACACAAATACATAGACATGGAAACTAATCTAATGGAACAAATCAAAAATATATCAAACTTTATGGACAGCACATGTAACGAAAGAATATCACAATGTGTGCACTATATATATATATATATATATGCAGAGACATACTTATCAACCAGATTCAGAACATAATCTTCTACAGGAATTCAAAATTATTGTCTGGTGAAAATATAACACAAATAATGTTGCGCAATTTGTTTATTACATCTAACAAAGTAAGCAAATGATCAGTCTATACTAGAACAATATGAGGAATGAAAAT]


>consensus_3964#0 TATATATATATATGTGTATATGATTACTACATCAAAATGAATATGAAAAAATGAAGATGA ACATCAAACAGGTGTATGATGAGCGAAAATTGACAAATATGCATTTCAGACACAAATACA TAGACATGGAAACTAATCTAATGGAACAAATCAAAAATATATCAAACTTTATGGACAGCA CATGTAACGAAAGAATATCACAATGTGTGCACTATATATATATATATATATATGCAGAGA CATACTTATCAACCAGATTCAGAACATAATCTTCTACAGGAATTCAAAATTATTGTCTGG TGAAAATATAACACAAATAATGTTGCGCAATTTGTTTATTACATCTAACAAAGTAAGCAA ATGATCAGTCTATACTAGAACAATATGAGGAATGAAAAT



consensusID : consensus_3964#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence
                              [AAATTGACAAATATGCATTTCAGACACAAATACATAGACATGGAAACTAATCTAATGGAACAAATCAAAAATATATCAAACTTTATGGTCAGTACATGTAACGAAAGAATATCACAATGTGTGCAATATATATATATATATATATATATATATATGCAGAGACATAATTATTAACCAGATTCAGAAAATAATCTTAAACAGGAATTCAAAATTATTGTCTAGAGAAAATATAACAGAAATAATGTTTGTAAATTTTTTATTACATCTAACAAAGTAAGCAAATGATCAGTCTCCTACTAGAACAATATGAGGAATGAAAATTAACGATGAAAAAGTTCATCAGCAACGTTTATACATAGATGCACAGTAATACATGTATATTATGGATAG]

[+] EMBL AA999493             [AAATTGACAAATATGCATTTCAGACACAAATACATAGACATGGAAACTAATCTAATGGAACAAATCAAAAATATATCAAACTTTATGGTCAGTACATGTAACGAAAGAATATCACAATGTGTGCAATATATATATATATATATATATATATATATGCAGAGACATAATTATTAACCAGATTCAGAAAATAATCTTAAACAGGAATTCAAAATTATTGTCTAGAGAAAATATAACAGAAATAATGTTTGTAAATTTTTTATTACATCTAACAAAGTAAGCAAATGATCAGTCTCCTACTAGAACAATATGAGGAATGAAAATTAACGATGAAAAAGTTCATCAGCAACGTTTATACATAGATGCACAGTAATACATGTATATTATGGATAG]


>consensus_3964#1 AAATTGACAAATATGCATTTCAGACACAAATACATAGACATGGAAACTAATCTAATGGAA CAAATCAAAAATATATCAAACTTTATGGTCAGTACATGTAACGAAAGAATATCACAATGT GTGCAATATATATATATATATATATATATATATATGCAGAGACATAATTATTAACCAGAT TCAGAAAATAATCTTAAACAGGAATTCAAAATTATTGTCTAGAGAAAATATAACAGAAAT AATGTTTGTAAATTTTTTATTACATCTAACAAAGTAAGCAAATGATCAGTCTCCTACTAG AACAATATGAGGAATGAAAATTAACGATGAAAAAGTTCATCAGCAACGTTTATACATAGA TGCACAGTAATACATGTATATTATGGATAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3964#0      TATATATATATATGTGTATATGATTACTACATCAAAATGAATATGAAAAAATGAAGATGA 60
consensus_3964#1      ------------------------------------------------------------
                                                                                  

consensus_3964#0      ACATCAAACAGGTGTATGATGAGCGAAAATTGACAAATATGCATTTCAGACACAAATACA 120
consensus_3964#1      --------------------------AAATTGACAAATATGCATTTCAGACACAAATACA 34
                                                **********************************

consensus_3964#0      TAGACATGGAAACTAATCTAATGGAACAAATCAAAAATATATCAAACTTTATGGACAGCA 180
consensus_3964#1      TAGACATGGAAACTAATCTAATGGAACAAATCAAAAATATATCAAACTTTATGGTCAGTA 94
                      ****************************************************** *** *

consensus_3964#0      CATGTAACGAAAGAATATCACAATGTGTGCACTATATATATATATATATATAT------- 233
consensus_3964#1      CATGTAACGAAAGAATATCACAATGTGTGCAATATATATATATATATATATATATATATA 154
                      ******************************* *********************       

consensus_3964#0      -GCAGAGACATACTTATCAACCAGATTCAGAACATAATCTTCTACAGGAATTCAAAATTA 292
consensus_3964#1      TGCAGAGACATAATTATTAACCAGATTCAGAAAATAATCTTAAACAGGAATTCAAAATTA 214
                       *********** **** ************** ********  *****************

consensus_3964#0      TTGTCTGGTGAAAATATAACACAAATAATGTTGCGCAATTTGTTTATTACATCTAACAAA 352
consensus_3964#1      TTGTCTAGAGAAAATATAACAGAAATAATGTT-TGTAAATTTTTTATTACATCTAACAAA 273
                      ****** * ************ **********  * ** ** ******************

consensus_3964#0      GTAAGCAAATGATCAGTCTA-TACTAGAACAATATGAGGAATGAAAAT------------ 399
consensus_3964#1      GTAAGCAAATGATCAGTCTCCTACTAGAACAATATGAGGAATGAAAATTAACGATGAAAA 333
                      *******************  ***************************            

consensus_3964#0      ---------------------------------------------------------
consensus_3964#1      AGTTCATCAGCAACGTTTATACATAGATGCACAGTAATACATGTATATTATGGATAG 390
                                                                               




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)