cluster # 3972

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Schistosoma mansoni
cluster # 3972 cluster # 3972 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3972#0 length = 276 sequences # 1

consensus_3972#1 length = 149 sequences # 1

consensusID : consensus_3972#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence

                              [TCATTATTGTCACTATTACGTAACCAACAAATGTGAAAGCAAAACATACCAACATGAATAAGCAGGCGTCGATGATAAATAATTATGAAAGATGACTGTGAAATAACTTATACAAGAACAAAAAAGTTAAACTTTTTAAAAACGACTAATGTCTCCGATTGTGAAGATTGTGGATAAAACCCTGATTAATACACTGTATGAGTTAATTTACAAAAACGTGAGTNGAGAGAGAGAGAATATACAAAGGGGAATTTGATTGTTATTTCAATGCATTAA]

[+] EMBL AA999562             [TCATTATTGTCACTATTACGTAACCAACAAATGTGAAAGCAAAACATACCAACATGAATAAGCAGGCGTCGATGATAAATAATTATGAAAGATGACTGTGAAATAACTTATACAAGAACAAAAAAGTTAAACTTTTTAAAAACGACTAATGTCTCCGATTGTGAAGATTGTGGATAAAACCCTGATTAATACACTGTATGAGTTAATTTACAAAAACGTGAGTNGAGAGAGAGAGAATATACAAAGGGGAATTTGATTGTTATTTCAATGCATTAA]




>consensus_3972#0
TCATTATTGTCACTATTACGTAACCAACAAATGTGAAAGCAAAACATACCAACATGAATA
AGCAGGCGTCGATGATAAATAATTATGAAAGATGACTGTGAAATAACTTATACAAGAACA
AAAAAGTTAAACTTTTTAAAAACGACTAATGTCTCCGATTGTGAAGATTGTGGATAAAAC
CCTGATTAATACACTGTATGAGTTAATTTACAAAAACGTGAGTNGAGAGAGAGAGAATAT
ACAAAGGGGAATTTGATTGTTATTTCAATGCATTAA

consensusID : consensus_3972#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 149
fasta sequence

                              [GTCAAACCCTGTGTGTGCACACCTATTTGTTAATGCATAGAAATAACCATCAAATGCCCCTTTGTATATCTCTCTCACTCTACTCACGTCTCGGTAAATTTACTCATACAGTGTATCAATCAGGGTTTTATCCACAATCTTCACGATCG]

[+] EMBL BG931343             [GTCAAACCCTGTGTGTGCACACCTATTTGTTAATGCATAGAAATAACCATCAAATGCCCCTTTGTATATCTCTCTCACTCTACTCACGTCTCGGTAAATTTACTCATACAGTGTATCAATCAGGGTTTTATCCACAATCTTCACGATCG]




>consensus_3972#1
GTCAAACCCTGTGTGTGCACACCTATTTGTTAATGCATAGAAATAACCATCAAATGCCCC
TTTGTATATCTCTCTCACTCTACTCACGTCTCGGTAAATTTACTCATACAGTGTATCAAT
CAGGGTTTTATCCACAATCTTCACGATCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3972#0      TCATTATTGTCACTATTACGTAACCAACAAATGTGAAAGCAAAACATACCAACATGAATA 60
consensus_3972#1      ------------------------------------------------------------
                                                                                  

consensus_3972#0      AGCAGGCGTCGATGATAAATAATTATGAAAGATGACTGTGAAATAACTTATACAAGAACA 120
consensus_3972#1      ------------------------------------------------------------
                                                                                  

consensus_3972#0      AAAAAGTTAAACTTTTTAAAAACG-ACTAATGTCTCCGATTGTGAAGATTGTGGATAAAA 179
consensus_3972#1      -----GTCAAACCCTGTGTGTGCACACCTATTTGTTAATGCATAGAAATAACC-ATCAAA 54
                           ** ****  * *     *  **  ** * *       *  * **     ** ***

consensus_3972#0      CCCTGATTAATACA-CTGTATGAGTTAATTTACAAAAACGTGAGTNGAGAGAGAGAGAAT 238
consensus_3972#1      TGCCCCTTTGTATATCTCTCTCACTCTACTCACGTCTCGGTAAATTTACTCATACAGTGT 114
                        *   **  ** * ** * * * *  * * **      ** * *  *   * * **  *

consensus_3972#0      ATACAAAGGGGAATTTGATTGTTATTTCAATGCATTAA 276
consensus_3972#1      AT-CAATCAGGGTTTTATCCACAATCTTCACG-ATCG- 149
                      ** ***   **  ***       ** *  * * **