cluster # 3973

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Schistosoma mansoni
cluster # 3973 cluster # 3973 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3973#0 length = 427 sequences # 1

consensus_3973#1 length = 417 sequences # 1

consensusID : consensus_3973#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence

                              [GGTGATAGAGAAGGTAAACATGATCATTGTATGCAAATCCCAATTACGATTGGTTCTGATCCAACGAGAGAAACATCATTCATTGGAAATGATGAAGCTTGTACTTAGTGAAGATTTCGTATCAGGTTCTAAACAGCCTGTCTGTGGGCGAAGATTACAGCTCAAATACATAGCTGGAGGCATTATGGTTATCTTTAAAAAACCAGGTATATATTGGAATCCTCTATTTACACGGCTCATAATCAGGCCATATCATACTTAAATAACATGTTACAAATCCTTATCCTGGATCCTATTCTATGATGATATCTCCCTTGTCTCATTCTTGATTTGCCTATTCACCTTTCTTAATTCACATGAATCTCTATGTCATAATAATTTCCGTGAAAACATACATCGACNAACGGAGATTCTTGCTTCGAGTTGC]

[+] EMBL CD187939             [GGTGATAGAGAAGGTAAACATGATCATTGTATGCAAATCCCAATTACGATTGGTTCTGATCCAACGAGAGAAACATCATTCATTGGAAATGATGAAGCTTGTACTTAGTGAAGATTTCGTATCAGGTTCTAAACAGCCTGTCTGTGGGCGAAGATTACAGCTCAAATACATAGCTGGAGGCATTATGGTTATCTTTAAAAAACCAGGTATATATTGGAATCCTCTATTTACACGGCTCATAATCAGGCCATATCATACTTAAATAACATGTTACAAATCCTTATCCTGGATCCTATTCTATGATGATATCTCCCTTGTCTCATTCTTGATTTGCCTATTCACCTTTCTTAATTCACATGAATCTCTATGTCATAATAATTTCCGTGAAAACATACATCGACNAACGGAGATTCTTGCTTCGAGTTGC]




>consensus_3973#0
GGTGATAGAGAAGGTAAACATGATCATTGTATGCAAATCCCAATTACGATTGGTTCTGAT
CCAACGAGAGAAACATCATTCATTGGAAATGATGAAGCTTGTACTTAGTGAAGATTTCGT
ATCAGGTTCTAAACAGCCTGTCTGTGGGCGAAGATTACAGCTCAAATACATAGCTGGAGG
CATTATGGTTATCTTTAAAAAACCAGGTATATATTGGAATCCTCTATTTACACGGCTCAT
AATCAGGCCATATCATACTTAAATAACATGTTACAAATCCTTATCCTGGATCCTATTCTA
TGATGATATCTCCCTTGTCTCATTCTTGATTTGCCTATTCACCTTTCTTAATTCACATGA
ATCTCTATGTCATAATAATTTCCGTGAAAACATACATCGACNAACGGAGATTCTTGCTTC
GAGTTGC

consensusID : consensus_3973#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 417
fasta sequence

                              [TATGTTATCCTTGAATATTCACGAATGTTTACCAAAATGAATGAAAAGTGATCATAAAATTTAATAACACTGTCCTTTTTCAGCTTGTACTTAGTGAAGATTTCGTATCAGGTTCTAAACAGCCTGTCTGTGGGCGAAGATTACAGCTCAAATACATAGCTGGAGGCATTATGGTTATCTTTAAAAAACCAGGTATATATTGGAATCCTCTATTTACACGGCTCATAATCAGGCCATATCATACTTAAATAACATGTTACAAATCCTTATCCTGGATCCTATTCTATGATGATATCTCCCTTGTCTCATTCTTGATTTGCCTATTCACCTTTCTTAATTCACATGAATCTCTATGTCATAATAATTTCCGTGAAAACATACATCGACAAACGGAGATTCTTGCTTCGAGTTGCATGG]

[-] EMBL CD179149             [TATGTTATCCTTGAATATTCACGAATGTTTACCAAAATGAATGAAAAGTGATCATAAAATTTAATAACACTGTCCTTTTTCAGCTTGTACTTAGTGAAGATTTCGTATCAGGTTCTAAACAGCCTGTCTGTGGGCGAAGATTACAGCTCAAATACATAGCTGGAGGCATTATGGTTATCTTTAAAAAACCAGGTATATATTGGAATCCTCTATTTACACGGCTCATAATCAGGCCATATCATACTTAAATAACATGTTACAAATCCTTATCCTGGATCCTATTCTATGATGATATCTCCCTTGTCTCATTCTTGATTTGCCTATTCACCTTTCTTAATTCACATGAATCTCTATGTCATAATAATTTCCGTGAAAACATACATCGACAAACGGAGATTCTTGCTTCGAGTTGCATGG]




>consensus_3973#1
TATGTTATCCTTGAATATTCACGAATGTTTACCAAAATGAATGAAAAGTGATCATAAAAT
TTAATAACACTGTCCTTTTTCAGCTTGTACTTAGTGAAGATTTCGTATCAGGTTCTAAAC
AGCCTGTCTGTGGGCGAAGATTACAGCTCAAATACATAGCTGGAGGCATTATGGTTATCT
TTAAAAAACCAGGTATATATTGGAATCCTCTATTTACACGGCTCATAATCAGGCCATATC
ATACTTAAATAACATGTTACAAATCCTTATCCTGGATCCTATTCTATGATGATATCTCCC
TTGTCTCATTCTTGATTTGCCTATTCACCTTTCTTAATTCACATGAATCTCTATGTCATA
ATAATTTCCGTGAAAACATACATCGACAAACGGAGATTCTTGCTTCGAGTTGCATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3973#0      GGTGATAGAGAAGGTAAACATGATCATTGTATGCAAATCCCAATTACGATTGGTTCTGAT 60
consensus_3973#1      ---------TATGTTATCCTTGAATATT---CACGAATGTTTACCAAAATGAATGAAAAG 48
                                * * **  * ***  ***     * ***    *  *  **   *    * 

consensus_3973#0      CCAACGAGAGAAACATCATTCATTGGAAATGATGAAGCTTGTACTTAGTGAAGATTTCGT 120
consensus_3973#1      TGATCATAAAATTTAATAA-CACTGTCCTTT-TTCAGCTTGTACTTAGTGAAGATTTCGT 106
                        * *   * *   *  *  ** **    *  *  *************************

consensus_3973#0      ATCAGGTTCTAAACAGCCTGTCTGTGGGCGAAGATTACAGCTCAAATACATAGCTGGAGG 180
consensus_3973#1      ATCAGGTTCTAAACAGCCTGTCTGTGGGCGAAGATTACAGCTCAAATACATAGCTGGAGG 166
                      ************************************************************

consensus_3973#0      CATTATGGTTATCTTTAAAAAACCAGGTATATATTGGAATCCTCTATTTACACGGCTCAT 240
consensus_3973#1      CATTATGGTTATCTTTAAAAAACCAGGTATATATTGGAATCCTCTATTTACACGGCTCAT 226
                      ************************************************************

consensus_3973#0      AATCAGGCCATATCATACTTAAATAACATGTTACAAATCCTTATCCTGGATCCTATTCTA 300
consensus_3973#1      AATCAGGCCATATCATACTTAAATAACATGTTACAAATCCTTATCCTGGATCCTATTCTA 286
                      ************************************************************

consensus_3973#0      TGATGATATCTCCCTTGTCTCATTCTTGATTTGCCTATTCACCTTTCTTAATTCACATGA 360
consensus_3973#1      TGATGATATCTCCCTTGTCTCATTCTTGATTTGCCTATTCACCTTTCTTAATTCACATGA 346
                      ************************************************************

consensus_3973#0      ATCTCTATGTCATAATAATTTCCGTGAAAACATACATCGACNAACGGAGATTCTTGCTTC 420
consensus_3973#1      ATCTCTATGTCATAATAATTTCCGTGAAAACATACATCGACAAACGGAGATTCTTGCTTC 406
                      ***************************************** ******************

consensus_3973#0      GAGTTGC---- 427
consensus_3973#1      GAGTTGCATGG 417
                      *******