cluster # 3975

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Schistosoma mansoni
cluster # 3975 cluster # 3975 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3975#0 length = 538 sequences # 1

consensus_3975#1 length = 206 sequences # 1

consensusID : consensus_3975#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 538
fasta sequence

                              [TTAACAGTTATTCATATTTTTATTTTCTGATAAAAAAATCCACAATTTTGCTATTTTCTCTCAGTTAAAAGGCATATTAAATTCCAGATCACTTCTTGTCAGCTGGAAAGCTCGTGAAGACAAATGGAATTGATTTTATAAATTTCCCGCTCTAATCAGTAATAAGAAATACTGAGTCTTGTACATTGTCCCATTTTCTAAGCTTCTTATCGCAATCTGTATATACAGCCTATATCATGAAAAATGCCACATTCAGTCAAAACTATACTTGTGTGAATTTGTAAATGAATTACTATAAATAGTAGGTCAAGAAAAGTATTTTTTTCTGCATGTTGTTATACCTGAATATCGAATAAACAGATTCATATGTACATAATATCCAACTGCAATTATCAATAACATATTTATAGGAATAGAACTTCAATTGATAACACATAACAGATAGATATTTAATTGTTTTATAATTATGACTTCAATTTGTTATTATAAAGTGTTAGGTTTAACTAAAACAGCTACAGATGAAGAAGTACGTCGTGCA]

[+] EMBL CD167021             [TTAACAGTTATTCATATTTTTATTTTCTGATAAAAAAATCCACAATTTTGCTATTTTCTCTCAGTTAAAAGGCATATTAAATTCCAGATCACTTCTTGTCAGCTGGAAAGCTCGTGAAGACAAATGGAATTGATTTTATAAATTTCCCGCTCTAATCAGTAATAAGAAATACTGAGTCTTGTACATTGTCCCATTTTCTAAGCTTCTTATCGCAATCTGTATATACAGCCTATATCATGAAAAATGCCACATTCAGTCAAAACTATACTTGTGTGAATTTGTAAATGAATTACTATAAATAGTAGGTCAAGAAAAGTATTTTTTTCTGCATGTTGTTATACCTGAATATCGAATAAACAGATTCATATGTACATAATATCCAACTGCAATTATCAATAACATATTTATAGGAATAGAACTTCAATTGATAACACATAACAGATAGATATTTAATTGTTTTATAATTATGACTTCAATTTGTTATTATAAAGTGTTAGGTTTAACTAAAACAGCTACAGATGAAGAAGTACGTCGTGCA]




>consensus_3975#0
TTAACAGTTATTCATATTTTTATTTTCTGATAAAAAAATCCACAATTTTGCTATTTTCTC
TCAGTTAAAAGGCATATTAAATTCCAGATCACTTCTTGTCAGCTGGAAAGCTCGTGAAGA
CAAATGGAATTGATTTTATAAATTTCCCGCTCTAATCAGTAATAAGAAATACTGAGTCTT
GTACATTGTCCCATTTTCTAAGCTTCTTATCGCAATCTGTATATACAGCCTATATCATGA
AAAATGCCACATTCAGTCAAAACTATACTTGTGTGAATTTGTAAATGAATTACTATAAAT
AGTAGGTCAAGAAAAGTATTTTTTTCTGCATGTTGTTATACCTGAATATCGAATAAACAG
ATTCATATGTACATAATATCCAACTGCAATTATCAATAACATATTTATAGGAATAGAACT
TCAATTGATAACACATAACAGATAGATATTTAATTGTTTTATAATTATGACTTCAATTTG
TTATTATAAAGTGTTAGGTTTAACTAAAACAGCTACAGATGAAGAAGTACGTCGTGCA

consensusID : consensus_3975#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 206
fasta sequence

                              [ATTTTCTGATAAAAAAATCCACACTTCTTGCTATTTGTCTCTCAGTTAAAAGGCATATTAAATTCCAGATCACTTCTTGTCAACTGGAAAGCTCGTGAAGACCACTGGAATTGATTTTATAAATAATATCCAACTGCCATTATCAATACCCTATTTATAGGAATAGAACTTCAATTGATAACACATAACAGATATATATTTAATTG]

[+] EMBL CD123041             [ATTTTCTGATAAAAAAATCCACACTTCTTGCTATTTGTCTCTCAGTTAAAAGGCATATTAAATTCCAGATCACTTCTTGTCAACTGGAAAGCTCGTGAAGACCACTGGAATTGATTTTATAAATAATATCCAACTGCCATTATCAATACCCTATTTATAGGAATAGAACTTCAATTGATAACACATAACAGATATATATTTAATTG]




>consensus_3975#1
ATTTTCTGATAAAAAAATCCACACTTCTTGCTATTTGTCTCTCAGTTAAAAGGCATATTA
AATTCCAGATCACTTCTTGTCAACTGGAAAGCTCGTGAAGACCACTGGAATTGATTTTAT
AAATAATATCCAACTGCCATTATCAATACCCTATTTATAGGAATAGAACTTCAATTGATA
ACACATAACAGATATATATTTAATTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3975#0      TTAACAGTTATTCATATTTTTATTTTCTGATAAAAAAATCCACAATT-TTGCTATTT-TC 58
consensus_3975#1      ---------------------ATTTTCTGATAAAAAAATCCACACTTCTTGCTATTTGTC 39
                                           *********************** ** ********* **

consensus_3975#0      TCTCAGTTAAAAGGCATATTAAATTCCAGATCACTTCTTGTCAGCTGGAAAGCTCGTGAA 118
consensus_3975#1      TCTCAGTTAAAAGGCATATTAAATTCCAGATCACTTCTTGTCAACTGGAAAGCTCGTGAA 99
                      ******************************************* ****************

consensus_3975#0      GACAAATGGAATTGATTTTATAAATT---TCCCGCTCTAATCAGTAATAAGAAATACTGA 175
consensus_3975#1      GACCACTGGAATTGATTTTATAAATAATATCCAACTGCCATTATCAATACCCTATTTATA 159
                      *** * *******************    ***  **   ** *  ****    **    *

consensus_3975#0      GTCTTGTACATTGTCCCATTTTCTAAGCTTCTTATCGCAATCTGTATATACAGCCTATAT 235
consensus_3975#1      G----GAATAGAACTTCAATTGATAA----CACATAACAGA-TATATATTTAATTG---- 206
                      *    * * *      ** **  ***    *  **  **   * *****  *        

consensus_3975#0      CATGAAAAATGCCACATTCAGTCAAAACTATACTTGTGTGAATTTGTAAATGAATTACTA 295
consensus_3975#1      ------------------------------------------------------------
                                                                                  

consensus_3975#0      TAAATAGTAGGTCAAGAAAAGTATTTTTTTCTGCATGTTGTTATACCTGAATATCGAATA 355
consensus_3975#1      ------------------------------------------------------------
                                                                                  

consensus_3975#0      AACAGATTCATATGTACATAATATCCAACTGCAATTATCAATAACATATTTATAGGAATA 415
consensus_3975#1      ------------------------------------------------------------
                                                                                  

consensus_3975#0      GAACTTCAATTGATAACACATAACAGATAGATATTTAATTGTTTTATAATTATGACTTCA 475
consensus_3975#1      ------------------------------------------------------------
                                                                                  

consensus_3975#0      ATTTGTTATTATAAAGTGTTAGGTTTAACTAAAACAGCTACAGATGAAGAAGTACGTCGT 535
consensus_3975#1      ------------------------------------------------------------
                                                                                  

consensus_3975#0      GCA 538
consensus_3975#1      ---