cluster # 3978

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Schistosoma mansoni
cluster # 3978 cluster # 3978 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3978#0 length = 310 sequences # 1

consensus_3978#1 length = 212 sequences # 1

consensusID : consensus_3978#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 310
fasta sequence

                              [TCTTTATTTTAATGCATTGAGTGCTTGACAAGATTGAAGATAAAAAACAATATATCAGATGATCTGTAATAATAATGCATAGAAACTAAATTTCAACTAATTTATTTGTTTGTCTTTTTCTGGTTGGGAATATGAAAACGAAAGGGTGTTAATAAATTAAAACTACAATAAAATAGAACTTATTTCATAAACAGAGTTTTTTAATGAGCATTAAAGGAAGATTTATTTGGTTGAGTGAAATAGCCGTCAGTTTTGGATATAGAATAAGGGATTAGAAGGAAACACAACTGATCTAAACACATTGTTCAAA]

[+] EMBL CD073768             [TCTTTATTTTAATGCATTGAGTGCTTGACAAGATTGAAGATAAAAAACAATATATCAGATGATCTGTAATAATAATGCATAGAAACTAAATTTCAACTAATTTATTTGTTTGTCTTTTTCTGGTTGGGAATATGAAAACGAAAGGGTGTTAATAAATTAAAACTACAATAAAATAGAACTTATTTCATAAACAGAGTTTTTTAATGAGCATTAAAGGAAGATTTATTTGGTTGAGTGAAATAGCCGTCAGTTTTGGATATAGAATAAGGGATTAGAAGGAAACACAACTGATCTAAACACATTGTTCAAA]




>consensus_3978#0
TCTTTATTTTAATGCATTGAGTGCTTGACAAGATTGAAGATAAAAAACAATATATCAGAT
GATCTGTAATAATAATGCATAGAAACTAAATTTCAACTAATTTATTTGTTTGTCTTTTTC
TGGTTGGGAATATGAAAACGAAAGGGTGTTAATAAATTAAAACTACAATAAAATAGAACT
TATTTCATAAACAGAGTTTTTTAATGAGCATTAAAGGAAGATTTATTTGGTTGAGTGAAA
TAGCCGTCAGTTTTGGATATAGAATAAGGGATTAGAAGGAAACACAACTGATCTAAACAC
ATTGTTCAAA

consensusID : consensus_3978#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 212
fasta sequence

                              [CTTTATTTTAATGCATTGAGTTDDGACAAGATTGAAGATAAAAAACAATATATCAGATGATCTGTAATAATAATGCATAGAAACTAAATTTCAACTAATTTAATTGGTTGGCCTTTTATGGTTGGGAATATGGAAACGAAGGGTGTTAATAAATTAAACTACATTAAATAAGACTTTTTTCATAAACAGGGTTTTTAATGGGCTTAAAGGAG]

[+] EMBL AW053266             [CTTTATTTTAATGCATTGAGTTDDGACAAGATTGAAGATAAAAAACAATATATCAGATGATCTGTAATAATAATGCATAGAAACTAAATTTCAACTAATTTAATTGGTTGGCCTTTTATGGTTGGGAATATGGAAACGAAGGGTGTTAATAAATTAAACTACATTAAATAAGACTTTTTTCATAAACAGGGTTTTTAATGGGCTTAAAGGAG]




>consensus_3978#1
CTTTATTTTAATGCATTGAGTTDDGACAAGATTGAAGATAAAAAACAATATATCAGATGA
TCTGTAATAATAATGCATAGAAACTAAATTTCAACTAATTTAATTGGTTGGCCTTTTATG
GTTGGGAATATGGAAACGAAGGGTGTTAATAAATTAAACTACATTAAATAAGACTTTTTT
CATAAACAGGGTTTTTAATGGGCTTAAAGGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3978#0      TCTTTATTTTAATGCATTGAGTGCTTGACAAGATTGAAGATAAAAAACAATATATCAGAT 60
consensus_3978#1      -CTTTATTTTAATGCATTGAGT-TDDGACAAGATTGAAGATAAAAAACAATATATCAGAT 58
                       *********************    **********************************

consensus_3978#0      GATCTGTAATAATAATGCATAGAAACTAAATTTCAACTAATTTATTTGTTTGTCTTTTTC 120
consensus_3978#1      GATCTGTAATAATAATGCATAGAAACTAAATTTCAACTAATTTAATTGGTTGGCCTTTTA 118
                      ******************************************** *** *** * **** 

consensus_3978#0      TGGTTGGGAATATGAAAACGAAAGGGTGTTAATAAATTAAAACTACAATAAAATAGAACT 180
consensus_3978#1      TGGTTGGGAATATGGAAACGAA-GGGTGTTAATAAATTAAA-CTACATTAAA-TAAGACT 175
                      ************** ******* ****************** ***** **** **  ***

consensus_3978#0      TATTTCATAAACAGAGTTTTTTAATGAGCATTAAAGGAAGATTTATTTGGTTGAGTGAAA 240
consensus_3978#1      TTTTTCATAAACAGGGTTTTT-AATGGGC-TTAAAGGAG--------------------- 212
                      * ************ ****** **** ** ********                      

consensus_3978#0      TAGCCGTCAGTTTTGGATATAGAATAAGGGATTAGAAGGAAACACAACTGATCTAAACAC 300
consensus_3978#1      ------------------------------------------------------------
                                                                                  

consensus_3978#0      ATTGTTCAAA 310
consensus_3978#1      ----------