cluster # 3979

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Schistosoma mansoni
cluster # 3979 cluster # 3979 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3979#0 length = 410 sequences # 1

consensus_3979#1 length = 379 sequences # 1

consensusID : consensus_3979#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTCACGACATATGGCTAAGCCTTTATTTTGGAGATAAGATTCATAGTGAAAAAAGTAAAAGCGTTGGAAGATGGTATATCAATTTGAAACTTTTGGTTGTCTATGCAAATACATTGGATTGATTTCCTTCCTAAAGTAACAAGTAATGTTAGAATGAAAAGCACTCAACGACGTCGCCAAATAGATACAACTTTGAATGATTAGATAGAAGCACAGAGGAAACTGAGTTGCATATTAGACATACATATATACATAAAATTAAGCAACTGAATCACAGGTCAAGGAGTCATGACGTATACATGCTGCTTTCCAGACAGCAAGTGACGCTGCTTCTTCAAAGCTGTTGACGGCGATTAACTCTAAACCGCTGTCAGAAATAAGGACTGGGCTTCG]

[+] EMBL AI395032             [TTTTTTTTTTTTTTTTTTTCACGACATATGGCTAAGCCTTTATTTTGGAGATAAGATTCATAGTGAAAAAAGTAAAAGCGTTGGAAGATGGTATATCAATTTGAAACTTTTGGTTGTCTATGCAAATACATTGGATTGATTTCCTTCCTAAAGTAACAAGTAATGTTAGAATGAAAAGCACTCAACGACGTCGCCAAATAGATACAACTTTGAATGATTAGATAGAAGCACAGAGGAAACTGAGTTGCATATTAGACATACATATATACATAAAATTAAGCAACTGAATCACAGGTCAAGGAGTCATGACGTATACATGCTGCTTTCCAGACAGCAAGTGACGCTGCTTCTTCAAAGCTGTTGACGGCGATTAACTCTAAACCGCTGTCAGAAATAAGGACTGGGCTTCG]




>consensus_3979#0
TTTTTTTTTTTTTTTTTTTCACGACATATGGCTAAGCCTTTATTTTGGAGATAAGATTCA
TAGTGAAAAAAGTAAAAGCGTTGGAAGATGGTATATCAATTTGAAACTTTTGGTTGTCTA
TGCAAATACATTGGATTGATTTCCTTCCTAAAGTAACAAGTAATGTTAGAATGAAAAGCA
CTCAACGACGTCGCCAAATAGATACAACTTTGAATGATTAGATAGAAGCACAGAGGAAAC
TGAGTTGCATATTAGACATACATATATACATAAAATTAAGCAACTGAATCACAGGTCAAG
GAGTCATGACGTATACATGCTGCTTTCCAGACAGCAAGTGACGCTGCTTCTTCAAAGCTG
TTGACGGCGATTAACTCTAAACCGCTGTCAGAAATAAGGACTGGGCTTCG

consensusID : consensus_3979#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 379
fasta sequence

                              [TAAATTATGCATGAGGTTAAAAGATTAGTTCTTATCAAACAATCCAGTCAGTCATATTGAAAAAATGTTTTCCAAACTGTTGACATGCAGAAAGCATGATAAACGGAAAAGTAAAACGAACTCAACTATGTCGCGTGACAAAAACATGAAAAGAAAAATCGTTTGCAATCATATTGAAAACGTTAACTTCACGACATATGGCTAAGCCTTTATTTTGGAGATAAGATTCATAGTGAAAAAAGTAAAAGCGTTGGAAGATGGTATATCAATTTGAAACTTTTGGTTGTCTATGCAAATACATTGGATTGATTTCCTTCCTAAAGTAACAAGTAATGTTAGAATGAAAAGCACTCAACGACGTCGCCAANTTGGTACAACT]

[+] EMBL AA999602             [TAAATTATGCATGAGGTTAAAAGATTAGTTCTTATCAAACAATCCAGTCAGTCATATTGAAAAAATGTTTTCCAAACTGTTGACATGCAGAAAGCATGATAAACGGAAAAGTAAAACGAACTCAACTATGTCGCGTGACAAAAACATGAAAAGAAAAATCGTTTGCAATCATATTGAAAACGTTAACTTCACGACATATGGCTAAGCCTTTATTTTGGAGATAAGATTCATAGTGAAAAAAGTAAAAGCGTTGGAAGATGGTATATCAATTTGAAACTTTTGGTTGTCTATGCAAATACATTGGATTGATTTCCTTCCTAAAGTAACAAGTAATGTTAGAATGAAAAGCACTCAACGACGTCGCCAANTTGGTACAACT]




>consensus_3979#1
TAAATTATGCATGAGGTTAAAAGATTAGTTCTTATCAAACAATCCAGTCAGTCATATTGA
AAAAATGTTTTCCAAACTGTTGACATGCAGAAAGCATGATAAACGGAAAAGTAAAACGAA
CTCAACTATGTCGCGTGACAAAAACATGAAAAGAAAAATCGTTTGCAATCATATTGAAAA
CGTTAACTTCACGACATATGGCTAAGCCTTTATTTTGGAGATAAGATTCATAGTGAAAAA
AGTAAAAGCGTTGGAAGATGGTATATCAATTTGAAACTTTTGGTTGTCTATGCAAATACA
TTGGATTGATTTCCTTCCTAAAGTAACAAGTAATGTTAGAATGAAAAGCACTCAACGACG
TCGCCAANTTGGTACAACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3979#0      ------------------------------------------------------------
consensus_3979#1      TAAATTATGCATGAGGTTAAAAGATTAGTTCTTATCAAACAATCCAGTCAGTCATATTGA 60
                                                                                  

consensus_3979#0      ------------------------------------------------------------
consensus_3979#1      AAAAATGTTTTCCAAACTGTTGACATGCAGAAAGCATGATAAACGGAAAAGTAAAACGAA 120
                                                                                  

consensus_3979#0      --------------------------------------------------TTTTTTTTTT 10
consensus_3979#1      CTCAACTATGTCGCGTGACAAAAACATGAAAAGAAAAATCGTTTGCAATCATATTGAAAA 180
                                                                         * **     

consensus_3979#0      TTTTTTTTTCACGACATATGGCTAAGCCTTTATTTTGGAGATAAGATTCATAGTGAAAAA 70
consensus_3979#1      CGTTAACTTCACGACATATGGCTAAGCCTTTATTTTGGAGATAAGATTCATAGTGAAAAA 240
                        **   *****************************************************

consensus_3979#0      AGTAAAAGCGTTGGAAGATGGTATATCAATTTGAAACTTTTGGTTGTCTATGCAAATACA 130
consensus_3979#1      AGTAAAAGCGTTGGAAGATGGTATATCAATTTGAAACTTTTGGTTGTCTATGCAAATACA 300
                      ************************************************************

consensus_3979#0      TTGGATTGATTTCCTTCCTAAAGTAACAAGTAATGTTAGAATGAAAAGCACTCAACGACG 190
consensus_3979#1      TTGGATTGATTTCCTTCCTAAAGTAACAAGTAATGTTAGAATGAAAAGCACTCAACGACG 360
                      ************************************************************

consensus_3979#0      TCGCCAAATAGATACAACTTTGAATGATTAGATAGAAGCACAGAGGAAACTGAGTTGCAT 250
consensus_3979#1      TCGCCAANTTGGTACAACT----------------------------------------- 379
                      ******* * * *******                                         

consensus_3979#0      ATTAGACATACATATATACATAAAATTAAGCAACTGAATCACAGGTCAAGGAGTCATGAC 310
consensus_3979#1      ------------------------------------------------------------
                                                                                  

consensus_3979#0      GTATACATGCTGCTTTCCAGACAGCAAGTGACGCTGCTTCTTCAAAGCTGTTGACGGCGA 370
consensus_3979#1      ------------------------------------------------------------
                                                                                  

consensus_3979#0      TTAACTCTAAACCGCTGTCAGAAATAAGGACTGGGCTTCG 410
consensus_3979#1      ----------------------------------------