cluster # 3989

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 3989 cluster # 3989 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3989#0 length = 430 sequences # 1

consensus_3989#1 length = 420 sequences # 1

consensusID : consensus_3989#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 430
fasta sequence

                              [CCGAATTCATCACAGAATAAAGCTTACCAACAGAGAAATTTCTACAGTCTAATCATTGTGAATGTAATAACCGATCACGCTAAACAGATAAGAAGACATTATTTCTGTTTCAGAAATTATAATTATCCACTGTTGAACATCCGTAAAATGGTTTATTTAAGTATTTTAAACTACATTAGTAAGCTAACACATTCAAGTATCGTGTGCGTAACAAAGTATGTGTGAATTATATCTCAAAATATCCATTGCGCATAAATACTTTTGATACCACCAAATTAGGAATAGACTGCATCTAATCCGATCTACCTTTTATCCAGTTGCACACAAGATGTTATTTATTATAAGAAAGTCGAATTATGTTCTAGTTTAGTATGAGTTAATTGTGCGAAATTCGAATGAATGTTTGACATGNAAAGTATTTTGAAATTGA]

[+] EMBL AI975105             [CCGAATTCATCACAGAATAAAGCTTACCAACAGAGAAATTTCTACAGTCTAATCATTGTGAATGTAATAACCGATCACGCTAAACAGATAAGAAGACATTATTTCTGTTTCAGAAATTATAATTATCCACTGTTGAACATCCGTAAAATGGTTTATTTAAGTATTTTAAACTACATTAGTAAGCTAACACATTCAAGTATCGTGTGCGTAACAAAGTATGTGTGAATTATATCTCAAAATATCCATTGCGCATAAATACTTTTGATACCACCAAATTAGGAATAGACTGCATCTAATCCGATCTACCTTTTATCCAGTTGCACACAAGATGTTATTTATTATAAGAAAGTCGAATTATGTTCTAGTTTAGTATGAGTTAATTGTGCGAAATTCGAATGAATGTTTGACATGNAAAGTATTTTGAAATTGA]




>consensus_3989#0
CCGAATTCATCACAGAATAAAGCTTACCAACAGAGAAATTTCTACAGTCTAATCATTGTG
AATGTAATAACCGATCACGCTAAACAGATAAGAAGACATTATTTCTGTTTCAGAAATTAT
AATTATCCACTGTTGAACATCCGTAAAATGGTTTATTTAAGTATTTTAAACTACATTAGT
AAGCTAACACATTCAAGTATCGTGTGCGTAACAAAGTATGTGTGAATTATATCTCAAAAT
ATCCATTGCGCATAAATACTTTTGATACCACCAAATTAGGAATAGACTGCATCTAATCCG
ATCTACCTTTTATCCAGTTGCACACAAGATGTTATTTATTATAAGAAAGTCGAATTATGT
TCTAGTTTAGTATGAGTTAATTGTGCGAAATTCGAATGAATGTTTGACATGNAAAGTATT
TTGAAATTGA

consensusID : consensus_3989#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence

                              [AGTGAATTATCGCAATGGAGGATTATTCTGAATGACCAGTTCATTACCGAATGATATCTCACTTCTACTGATACGTTGTGGTATATAGCTTGGAATCATTTCCCATGAAACAATTCAGACACTTAATCTCACCGAATGAAGCTACAACTTGCTTACCAATAGAGAAAGATCTAAAGTCCAATCATTGTGAACGTAGTAACGGGATACACTGAACAGATAAGAAAGCACTATTTCTTTTTCAGAAATTATAATTATCCTCTGTTGAACATCCGTAGAATGGTTTATTTCAGTATTTTAAACTACATTGCTAAGCTAACTCACTGATGTATCGTGTGCATAATGTGTGAATTACAACTCTAAATATCCATTGAAAATAAATATGTTTGTATACCTCCGAACTAGGTATAGGCTACATCTAAT]

[-] EMBL CD179212             [AGTGAATTATCGCAATGGAGGATTATTCTGAATGACCAGTTCATTACCGAATGATATCTCACTTCTACTGATACGTTGTGGTATATAGCTTGGAATCATTTCCCATGAAACAATTCAGACACTTAATCTCACCGAATGAAGCTACAACTTGCTTACCAATAGAGAAAGATCTAAAGTCCAATCATTGTGAACGTAGTAACGGGATACACTGAACAGATAAGAAAGCACTATTTCTTTTTCAGAAATTATAATTATCCTCTGTTGAACATCCGTAGAATGGTTTATTTCAGTATTTTAAACTACATTGCTAAGCTAACTCACTGATGTATCGTGTGCATAATGTGTGAATTACAACTCTAAATATCCATTGAAAATAAATATGTTTGTATACCTCCGAACTAGGTATAGGCTACATCTAAT]




>consensus_3989#1
AGTGAATTATCGCAATGGAGGATTATTCTGAATGACCAGTTCATTACCGAATGATATCTC
ACTTCTACTGATACGTTGTGGTATATAGCTTGGAATCATTTCCCATGAAACAATTCAGAC
ACTTAATCTCACCGAATGAAGCTACAACTTGCTTACCAATAGAGAAAGATCTAAAGTCCA
ATCATTGTGAACGTAGTAACGGGATACACTGAACAGATAAGAAAGCACTATTTCTTTTTC
AGAAATTATAATTATCCTCTGTTGAACATCCGTAGAATGGTTTATTTCAGTATTTTAAAC
TACATTGCTAAGCTAACTCACTGATGTATCGTGTGCATAATGTGTGAATTACAACTCTAA
ATATCCATTGAAAATAAATATGTTTGTATACCTCCGAACTAGGTATAGGCTACATCTAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3989#0      ------------------------------------------------------------
consensus_3989#1      AGTGAATTATCGCAATGGAGGATTATTCTGAATGACCAGTTCATTACCGAATGATATCTC 60
                                                                                  

consensus_3989#0      ------------------------------------------------------------
consensus_3989#1      ACTTCTACTGATACGTTGTGGTATATAGCTTGGAATCATTTCCCATGAAACAATTCAGAC 120
                                                                                  

consensus_3989#0      -----------CCGAATTCATCACAGAATAAAGCTTACCAACAGAGAAATTTCTACAGTC 49
consensus_3989#1      ACTTAATCTCACCGAATGAAGCTACAACTT--GCTTACCAATAGAGAAAGATCTAAAGTC 178
                                 ******  * *    * *   ********* *******  **** ****

consensus_3989#0      TAATCATTGTGAATGTAATAACCGATCACGCTAAACAGATAAGAAGACATTATTTCTGTT 109
consensus_3989#1      CAATCATTGTGAACGTAGTAACGGGATACACTGAACAGATAAGAAAGCACTATTTCTTTT 238
                       ************ *** **** *   ** ** ************  ** ******* **

consensus_3989#0      TCAGAAATTATAATTATCCACTGTTGAACATCCGTAAAATGGTTTATTTAAGTATTTTAA 169
consensus_3989#1      TCAGAAATTATAATTATCCTCTGTTGAACATCCGTAGAATGGTTTATTTCAGTATTTTAA 298
                      ******************* **************** ************ **********

consensus_3989#0      ACTACATTAGTAAGCTAACACATTCAAGTATCGTGTGCGTAACAAAGTATGTGTGAATTA 229
consensus_3989#1      ACTACATTGCTAAGCTAACTCACTGATGTATCGTGTGCATAA-------TGTGTGAATTA 351
                      ********  ********* ** * * *********** ***       ***********

consensus_3989#0      TATCTCAAAATATCCATTGCGCATAAATACTTTTG-ATACCACCAAATTAGGAATAGACT 288
consensus_3989#1      CAACTCTAAATATCCATTGAAAATAAATATGTTTGTATACCTCCGAACTAGGTATAGGCT 411
                       * *** ************   *******  **** ***** ** ** **** **** **

consensus_3989#0      GCATCTAATCCGATCTACCTTTTATCCAGTTGCACACAAGATGTTATTTATTATAAGAAA 348
consensus_3989#1      ACATCTAAT--------------------------------------------------- 420
                       ********                                                   

consensus_3989#0      GTCGAATTATGTTCTAGTTTAGTATGAGTTAATTGTGCGAAATTCGAATGAATGTTTGAC 408
consensus_3989#1      ------------------------------------------------------------
                                                                                  

consensus_3989#0      ATGNAAAGTATTTTGAAATTGA 430
consensus_3989#1      ----------------------