cluster # 3993

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Schistosoma mansoni
cluster # 3993 cluster # 3993 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3993#0 length = 436 sequences # 1

consensus_3993#1 length = 252 sequences # 1

consensusID : consensus_3993#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence

                              [AGATATATCATGAATGCGAGAGAAACAGGACCTGACAATATAACAGCTGAAGCACAGAAGTCAGATGTACTTTGCTTTGTGTATGTGTGACTGCACTCACAAACACATTTGAATTGATACACACGGTGGGATATCACACAAGCGTTTTTAGTCTTATTTTCCAGAGTGATGTGGCTTCAATTTGTCTTCTTTGTGTTGACTTATATCGCTGTGATTTCCAGTTGTACCGGCTTCAGTTGACCAATTTCACACTGTTCTCCATGAATTAAATTTTAAGGAAACTGAACTTAACATAATTCTCCATGTATCGTTACACGATATTCTTGGATAGATGCACTTGATTGGTTGATCAAATGATTGGTTATGTTGAATATTGATTGAAGTTGGATATCCGTGNTTAGATTGACGGTATCTGGGTTGACAATAAATTGAATAA]

[+] EMBL AI014191             [AGATATATCATGAATGCGAGAGAAACAGGACCTGACAATATAACAGCTGAAGCACAGAAGTCAGATGTACTTTGCTTTGTGTATGTGTGACTGCACTCACAAACACATTTGAATTGATACACACGGTGGGATATCACACAAGCGTTTTTAGTCTTATTTTCCAGAGTGATGTGGCTTCAATTTGTCTTCTTTGTGTTGACTTATATCGCTGTGATTTCCAGTTGTACCGGCTTCAGTTGACCAATTTCACACTGTTCTCCATGAATTAAATTTTAAGGAAACTGAACTTAACATAATTCTCCATGTATCGTTACACGATATTCTTGGATAGATGCACTTGATTGGTTGATCAAATGATTGGTTATGTTGAATATTGATTGAAGTTGGATATCCGTGNTTAGATTGACGGTATCTGGGTTGACAATAAATTGAATAA]




>consensus_3993#0
AGATATATCATGAATGCGAGAGAAACAGGACCTGACAATATAACAGCTGAAGCACAGAAG
TCAGATGTACTTTGCTTTGTGTATGTGTGACTGCACTCACAAACACATTTGAATTGATAC
ACACGGTGGGATATCACACAAGCGTTTTTAGTCTTATTTTCCAGAGTGATGTGGCTTCAA
TTTGTCTTCTTTGTGTTGACTTATATCGCTGTGATTTCCAGTTGTACCGGCTTCAGTTGA
CCAATTTCACACTGTTCTCCATGAATTAAATTTTAAGGAAACTGAACTTAACATAATTCT
CCATGTATCGTTACACGATATTCTTGGATAGATGCACTTGATTGGTTGATCAAATGATTG
GTTATGTTGAATATTGATTGAAGTTGGATATCCGTGNTTAGATTGACGGTATCTGGGTTG
ACAATAAATTGAATAA

consensusID : consensus_3993#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 252
fasta sequence

                              [GCCATGCAAGAATCGTGATCCATCGGAAATCGCTGAAGAAGAAAAACAAGGGACCTCGGACAAATAATAAAACAAGCTCGGAAAGCACCAAGAAAGTTCAAGATNGTAACTTTTCGCTATTGGTMGTAATGGTGGTGAACTGGCACTTCAACAAAACAACAATTTTGGAATTTGATAACACACGGGTGGGGATATCACACAAAGCGTTTTTTAGTCTTATTTTCCAGAGTGATGTGGCTTCAATTTGTCTTC]

[+] EMBL AI764851             [GCCATGCAAGAATCGTGATCCATCGGAAATCGCTGAAGAAGAAAAACAAGGGACCTCGGACAAATAATAAAACAAGCTCGGAAAGCACCAAGAAAGTTCAAGATNGTAACTTTTCGCTATTGGTMGTAATGGTGGTGAACTGGCACTTCAACAAAACAACAATTTTGGAATTTGATAACACACGGGTGGGGATATCACACAAAGCGTTTTTTAGTCTTATTTTCCAGAGTGATGTGGCTTCAATTTGTCTTC]




>consensus_3993#1
GCCATGCAAGAATCGTGATCCATCGGAAATCGCTGAAGAAGAAAAACAAGGGACCTCGGA
CAAATAATAAAACAAGCTCGGAAAGCACCAAGAAAGTTCAAGATNGTAACTTTTCGCTAT
TGGTMGTAATGGTGGTGAACTGGCACTTCAACAAAACAACAATTTTGGAATTTGATAACA
CACGGGTGGGGATATCACACAAAGCGTTTTTTAGTCTTATTTTCCAGAGTGATGTGGCTT
CAATTTGTCTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3993#0      ------------------------------------------------AGATATATCATG 12
consensus_3993#1      GCCATGCAAGAATCGTGATCCATCGGAAATCGCTGAAGAAGAAAAACAAGGGACCTCGGA 60
                                                                      **  *  **   

consensus_3993#0      AATGCGAGAGAAACAGGACCTGACAATAT---AACAGCTGAAGCACAGAAGTCAGATGTA 69
consensus_3993#1      CAAATAATA-AAACAAGCTCGGAAAGCACCAAGAAAGTTCAAGATNGTAACTTTTCGCTA 119
                       *    * * ***** *  * ** *  *     * ** * ***     ** *      **

consensus_3993#0      CTTTGCTTTGTGTATGTGTGACTGCACTC--ACAAA----CACATTTGAA--TTGATA-C 120
consensus_3993#1      TTGGTMGTAATGGTGGTGAACTGGCACTTCAACAAAACAACAATTTTGGAATTTGATAAC 179
                       *     *  **   ***     *****   *****    **  **** *  ****** *

consensus_3993#0      ACACGGT--GGGATATCACACAA-GCGTTTTT-AGTCTTATTTTCCAGAGTGATGTGGCT 176
consensus_3993#1      ACACGGGTGGGGATATCACACAAAGCGTTTTTTAGTCTTATTTTCCAGAGTGATGTGGCT 239
                      ******   ************** ******** ***************************

consensus_3993#0      TCAATTTGTCTTCTTTGTGTTGACTTATATCGCTGTGATTTCCAGTTGTACCGGCTTCAG 236
consensus_3993#1      TCAATTTGTCTTC----------------------------------------------- 252
                      *************                                               

consensus_3993#0      TTGACCAATTTCACACTGTTCTCCATGAATTAAATTTTAAGGAAACTGAACTTAACATAA 296
consensus_3993#1      ------------------------------------------------------------
                                                                                  

consensus_3993#0      TTCTCCATGTATCGTTACACGATATTCTTGGATAGATGCACTTGATTGGTTGATCAAATG 356
consensus_3993#1      ------------------------------------------------------------
                                                                                  

consensus_3993#0      ATTGGTTATGTTGAATATTGATTGAAGTTGGATATCCGTGNTTAGATTGACGGTATCTGG 416
consensus_3993#1      ------------------------------------------------------------
                                                                                  

consensus_3993#0      GTTGACAATAAATTGAATAA 436
consensus_3993#1      --------------------